Wall clock time and date at job start Mon Mar 30 2020 03:20:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09006 * 109.46784 * 2 1 4 4 N 1.46900 * 109.47347 * 239.99812 * 2 1 3 5 5 C 1.53000 * 109.47046 * 119.99685 * 2 1 3 6 6 N 1.46906 * 109.46894 * 175.00073 * 5 2 1 7 7 C 1.46894 * 110.99914 * 66.04948 * 6 5 2 8 8 C 1.46899 * 110.99811 * 189.99974 * 6 5 2 9 9 C 1.53003 * 109.46971 * 172.53133 * 8 6 5 10 10 C 1.50700 * 115.54877 * 305.15140 * 9 8 6 11 11 H 1.07996 * 120.00161 * 94.20709 * 10 9 8 12 12 C 1.37883 * 119.99565 * 274.20415 * 10 9 8 13 13 N 1.31510 * 120.00194 * 5.72630 * 12 10 9 14 14 Si 1.86803 * 119.99503 * 185.72921 * 12 10 9 15 15 H 1.48499 * 109.46847 * 179.97438 * 14 12 10 16 16 H 1.48494 * 109.47196 * 300.00074 * 14 12 10 17 17 H 1.48502 * 109.47110 * 59.99985 * 14 12 10 18 18 C 1.52994 * 117.49860 * 90.82158 * 9 8 6 19 19 C 1.53007 * 117.49589 * 159.48370 * 9 8 6 20 20 H 1.08997 * 109.46534 * 180.02562 * 1 2 3 21 21 H 1.08994 * 109.46925 * 300.00459 * 1 2 3 22 22 H 1.09000 * 109.46540 * 60.00204 * 1 2 3 23 23 H 1.00896 * 110.99780 * 296.04880 * 4 2 1 24 24 H 1.00901 * 110.99530 * 60.00009 * 4 2 1 25 25 H 1.08997 * 109.47519 * 55.00372 * 5 2 1 26 26 H 1.09001 * 109.47475 * 295.00268 * 5 2 1 27 27 H 1.09005 * 109.47213 * 188.77011 * 7 6 5 28 28 H 1.09005 * 109.47184 * 308.76944 * 7 6 5 29 29 H 1.09005 * 109.47379 * 68.76938 * 7 6 5 30 30 H 1.08997 * 109.47014 * 52.53181 * 8 6 5 31 31 H 1.09005 * 109.47105 * 292.53380 * 8 6 5 32 32 H 0.96998 * 120.00573 * 355.12983 * 13 12 10 33 33 H 1.09000 * 117.49963 * 215.00167 * 18 9 8 34 34 H 1.09001 * 117.50050 * 0.02562 * 18 9 8 35 35 H 1.08998 * 117.49771 * 359.97299 * 19 9 8 36 36 H 1.08998 * 117.49235 * 144.97326 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0198 -0.6925 -1.1994 5 6 2.0400 -0.7212 1.2493 6 7 3.5041 -0.8266 1.1904 7 6 4.1310 0.4994 1.2720 8 6 4.0108 -1.7142 2.2455 9 6 5.5090 -1.9471 2.0402 10 6 5.9055 -2.4703 0.6836 11 1 6.2068 -1.7833 -0.0932 12 6 5.8835 -3.8263 0.4344 13 7 5.4104 -4.6538 1.3404 14 14 6.5258 -4.4877 -1.1902 15 1 6.3929 -5.9666 -1.2098 16 1 5.7401 -3.9048 -2.3073 17 1 7.9556 -4.1176 -1.3448 18 6 6.4752 -0.9872 2.7371 19 6 6.3218 -2.4227 3.2461 20 1 -0.3632 -1.0277 0.0005 21 1 -0.3633 0.5139 0.8899 22 1 -0.3632 0.5138 -0.8900 23 1 1.7503 -1.6648 -1.1908 24 1 1.6962 -0.2350 -2.0385 25 1 1.6055 -1.7197 1.2953 26 1 1.7517 -0.1583 2.1370 27 1 5.1986 0.4096 1.0708 28 1 3.6769 1.1620 0.5351 29 1 3.9828 0.9106 2.2706 30 1 3.4854 -2.6682 2.2011 31 1 3.8449 -1.2530 3.2192 32 1 5.1427 -4.3190 2.2105 33 1 7.3977 -0.7341 2.2145 34 1 6.0436 -0.1900 3.3423 35 1 5.7893 -2.5693 4.1858 36 1 7.1431 -3.1143 3.0582 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379351371.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:56 Heat of formation + Delta-G solvation = 24.815643 kcal Electronic energy + Delta-G solvation = -14991.837985 eV Core-core repulsion = 12704.601147 eV Total energy + Delta-G solvation = -2287.236839 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.07673 -36.37699 -33.81606 -31.60690 -28.69940 -26.87015 -26.50712 -24.61147 -22.10466 -21.16645 -19.84151 -19.06220 -16.35339 -16.03398 -14.94224 -14.57183 -13.93576 -13.81595 -13.56752 -13.04354 -12.78807 -12.63506 -12.31986 -12.01434 -11.66919 -11.35600 -10.98054 -10.91758 -10.63704 -10.60882 -10.35988 -10.23914 -9.95898 -9.29860 -8.30448 -8.24476 -8.15451 -8.08972 -7.23641 -6.10215 -3.77700 3.57591 3.60964 3.78155 4.53909 4.71847 4.93331 5.14594 5.28097 5.36328 5.46440 5.58151 5.70790 5.81484 5.95843 6.02992 6.06884 6.10988 6.19362 6.29643 6.34440 6.44486 6.52238 6.65144 6.67856 6.88701 6.99052 7.36174 7.43675 7.59072 7.90277 8.00920 8.09725 8.53783 8.70473 9.13538 9.92338 11.29938 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.025701 B = 0.011186 C = 0.008884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.198935 B = 2502.466475 C = 3151.092526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.094 3.906 3 H 0.074 0.926 4 N -0.818 5.818 5 C 0.061 3.939 6 N -0.490 5.490 7 C 0.038 3.962 8 C 0.099 3.901 9 C 0.037 3.963 10 C -0.532 4.532 11 H 0.051 0.949 12 C 0.023 3.977 13 N -0.919 5.919 14 Si 1.066 2.934 15 H -0.288 1.288 16 H -0.287 1.287 17 H -0.293 1.293 18 C -0.201 4.201 19 C -0.184 4.184 20 H 0.054 0.946 21 H 0.055 0.945 22 H 0.052 0.948 23 H 0.342 0.658 24 H 0.327 0.673 25 H 0.066 0.934 26 H 0.020 0.980 27 H 0.075 0.925 28 H 0.054 0.946 29 H 0.001 0.999 30 H 0.065 0.935 31 H -0.005 1.005 32 H 0.270 0.730 33 H 0.078 0.922 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.345 8.142 -0.937 11.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.019 4.019 3 H 0.092 0.908 4 N -0.346 5.346 5 C -0.068 4.068 6 N -0.213 5.213 7 C -0.111 4.111 8 C -0.029 4.029 9 C 0.036 3.964 10 C -0.570 4.570 11 H 0.069 0.931 12 C -0.180 4.180 13 N -0.556 5.556 14 Si 0.895 3.105 15 H -0.213 1.213 16 H -0.214 1.214 17 H -0.220 1.220 18 C -0.239 4.239 19 C -0.223 4.223 20 H 0.073 0.927 21 H 0.074 0.926 22 H 0.071 0.929 23 H 0.155 0.845 24 H 0.139 0.861 25 H 0.084 0.916 26 H 0.038 0.962 27 H 0.094 0.906 28 H 0.072 0.928 29 H 0.019 0.981 30 H 0.084 0.916 31 H 0.013 0.987 32 H 0.082 0.918 33 H 0.096 0.904 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -6.295 6.711 -2.018 9.420 hybrid contribution -1.510 1.669 1.646 2.788 sum -7.805 8.380 -0.371 11.458 Atomic orbital electron populations 1.22682 0.98627 1.01808 1.01618 1.21424 0.90495 0.98303 0.91661 0.90801 1.58578 1.67290 1.06332 1.02410 1.22130 0.90623 0.99497 0.94598 1.61614 1.01918 1.10183 1.47549 1.22310 1.01454 0.90199 0.97113 1.21768 0.97552 0.95165 0.88378 1.19081 0.87296 0.96756 0.93290 1.21045 1.47264 0.93522 0.95203 0.93053 1.25612 0.94789 0.93494 1.04104 1.70730 1.39848 1.38404 1.06605 0.83594 0.75912 0.75721 0.75242 1.21346 1.21385 1.21964 1.22931 1.03266 0.91999 1.05656 1.22787 1.04741 0.96469 0.98262 0.92709 0.92601 0.92898 0.84505 0.86135 0.91576 0.96181 0.90623 0.92764 0.98105 0.91641 0.98736 0.91840 0.90356 0.92069 0.91983 0.89825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.14 9.48 37.16 0.35 -1.78 16 2 C 0.09 1.34 3.16 -67.71 -0.21 1.13 16 3 H 0.07 1.07 6.62 -51.93 -0.34 0.72 16 4 N -0.82 -12.61 8.98 -4.66 -0.04 -12.66 16 5 C 0.06 1.04 4.59 -3.82 -0.02 1.02 16 6 N -0.49 -10.15 4.20 -242.91 -1.02 -11.17 16 7 C 0.04 0.72 8.82 60.06 0.53 1.25 16 8 C 0.10 2.27 4.84 -3.82 -0.02 2.26 16 9 C 0.04 0.91 0.46 -155.66 -0.07 0.84 16 10 C -0.53 -14.94 8.53 -34.44 -0.29 -15.24 16 11 H 0.05 1.50 7.82 -52.49 -0.41 1.09 16 12 C 0.02 0.67 5.39 -17.82 -0.10 0.58 16 13 N -0.92 -27.60 13.56 55.43 0.75 -26.85 16 14 Si 1.07 25.98 29.91 -169.99 -5.08 20.90 16 15 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 16 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 17 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 18 C -0.20 -4.50 8.36 -26.69 -0.22 -4.73 16 19 C -0.18 -4.39 8.58 -26.69 -0.23 -4.62 16 20 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 21 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 22 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 23 H 0.34 5.38 8.98 -39.29 -0.35 5.03 16 24 H 0.33 4.18 9.04 -39.29 -0.36 3.82 16 25 H 0.07 1.17 7.97 -51.93 -0.41 0.75 16 26 H 0.02 0.33 8.12 -51.93 -0.42 -0.10 16 27 H 0.08 1.59 6.45 -51.93 -0.34 1.25 16 28 H 0.05 0.93 6.22 -51.93 -0.32 0.61 16 29 H 0.00 0.01 8.11 -51.93 -0.42 -0.41 16 30 H 0.07 1.63 7.77 -51.93 -0.40 1.23 16 31 H -0.01 -0.12 8.07 -51.93 -0.42 -0.54 16 32 H 0.27 8.05 6.20 -40.82 -0.25 7.80 16 33 H 0.08 1.76 8.14 -51.93 -0.42 1.34 16 34 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 35 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 36 H 0.08 2.13 8.14 -51.93 -0.42 1.70 16 LS Contribution 288.53 15.07 4.35 4.35 Total: -1.00 -30.19 288.53 -7.53 -37.72 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: -6.21 Total: 7.02 kcal Atomic # 6 Polarization: -19.02 SS G_CDS: -0.28 Total: -19.31 kcal Atomic # 7 Polarization: -50.36 SS G_CDS: -0.31 Total: -50.67 kcal Atomic # 14 Polarization: 25.98 SS G_CDS: -5.08 Total: 20.90 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -30.19 -7.53 -37.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379351371.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.536 kcal (2) G-P(sol) polarization free energy of solvation -30.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.721 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds