Wall clock time and date at job start Mon Mar 30 2020 03:33:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46900 * 109.47202 * 2 1 4 4 C 1.47843 * 111.00412 * 49.15372 * 3 2 1 5 5 C 1.54906 * 104.79693 * 146.36281 * 4 3 2 6 6 H 1.08997 * 110.98897 * 81.02271 * 5 4 3 7 7 C 1.53000 * 110.99222 * 204.83887 * 5 4 3 8 8 C 1.55138 * 101.65389 * 322.93081 * 5 4 3 9 9 H 1.08996 * 110.85576 * 277.19916 * 8 5 4 10 10 N 1.46906 * 110.70441 * 154.03600 * 8 5 4 11 11 C 1.46901 * 110.99793 * 159.94952 * 10 8 5 12 12 C 1.50701 * 109.46921 * 179.97438 * 11 10 8 13 13 H 1.07998 * 120.00129 * 0.02562 * 12 11 10 14 14 C 1.37880 * 119.99861 * 179.97438 * 12 11 10 15 15 N 1.31510 * 119.99913 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 119.99734 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.47294 * 60.00559 * 16 14 12 18 18 H 1.48503 * 109.46954 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47431 * 300.00157 * 16 14 12 20 20 C 1.47449 * 110.99947 * 169.99641 * 3 2 1 21 21 H 1.09001 * 109.46709 * 300.00550 * 1 2 3 22 22 H 1.09000 * 109.46413 * 60.00026 * 1 2 3 23 23 H 1.08992 * 109.47476 * 180.02562 * 1 2 3 24 24 H 1.08994 * 109.47327 * 239.99691 * 2 1 3 25 25 H 1.09004 * 109.46832 * 119.99366 * 2 1 3 26 26 H 1.08999 * 110.37552 * 265.19356 * 4 3 2 27 27 H 1.09007 * 110.37219 * 27.53442 * 4 3 2 28 28 H 1.08994 * 109.47236 * 172.26868 * 7 5 4 29 29 H 1.09004 * 109.47181 * 292.27536 * 7 5 4 30 30 H 1.09005 * 109.46720 * 52.26774 * 7 5 4 31 31 H 1.00899 * 110.99995 * 35.99350 * 10 8 5 32 32 H 1.09002 * 109.47401 * 59.99808 * 11 10 8 33 33 H 1.09001 * 109.46874 * 299.99821 * 11 10 8 34 34 H 0.97002 * 119.99768 * 179.97438 * 15 14 12 35 35 H 1.09006 * 109.88498 * 117.33464 * 20 3 2 36 36 H 1.09001 * 109.88989 * 356.14795 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.3453 2.1855 1.0441 5 6 2.4201 3.1906 1.5280 6 1 2.4945 4.0397 0.8487 7 6 2.1306 3.6574 2.9559 8 6 3.7056 2.3235 1.4766 9 1 3.8006 1.7167 2.3770 10 7 4.8942 3.1673 1.2935 11 6 6.1119 2.4587 1.7095 12 6 7.3076 3.3533 1.5070 13 1 7.1761 4.3488 1.1094 14 6 8.5695 2.9012 1.8302 15 7 8.7296 1.6892 2.3148 16 14 10.0514 4.0104 1.5798 17 1 9.8918 5.2415 2.3949 18 1 11.2825 3.2941 2.0003 19 1 10.1585 4.3773 0.1448 20 6 3.4739 1.4313 0.2391 21 1 -0.3633 0.5139 0.8900 22 1 -0.3632 0.5138 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 1.8934 -0.5138 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 0.4916 2.7164 0.6229 27 1 1.0268 1.5451 1.8667 28 1 2.9681 4.2521 3.3206 29 1 1.2244 4.2631 2.9635 30 1 1.9930 2.7896 3.6010 31 1 4.7972 4.0410 1.7887 32 1 6.2290 1.5552 1.1110 33 1 6.0335 2.1892 2.7627 34 1 9.6174 1.3710 2.5418 35 1 3.9786 1.8598 -0.6268 36 1 3.8504 0.4264 0.4307 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379414131.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:17 Heat of formation + Delta-G solvation = -6.431152 kcal Electronic energy + Delta-G solvation = -14485.814256 eV Core-core repulsion = 12197.222454 eV Total energy + Delta-G solvation = -2288.591801 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.20322 -35.21952 -33.27803 -31.82296 -30.45463 -27.65186 -26.19351 -25.12823 -22.47913 -21.42689 -19.99461 -19.75979 -16.52033 -15.75455 -15.37285 -14.81714 -14.62273 -13.83303 -13.62056 -13.49031 -12.79264 -12.59742 -12.32876 -12.20413 -12.03796 -11.57078 -11.33737 -11.14405 -10.97922 -10.83150 -10.69063 -10.61351 -10.51465 -10.14815 -9.74735 -9.16167 -8.48686 -8.08125 -7.30689 -6.02729 -4.04766 3.34298 3.38017 3.41347 4.17276 4.43609 4.80515 4.93902 5.02640 5.16340 5.32373 5.33256 5.40540 5.51634 5.60042 5.72961 5.74235 5.75973 5.85132 5.97423 6.05994 6.11929 6.13833 6.25968 6.34744 6.52943 6.66989 7.18473 7.28502 7.32343 7.42032 7.79731 8.13816 8.40134 8.61715 9.04445 9.60216 11.08419 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.048476 B = 0.006343 C = 0.005905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.464903 B = 4413.439276 C = 4740.234769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.044 3.956 3 N -0.529 5.529 4 C 0.050 3.950 5 C -0.106 4.106 6 H 0.091 0.909 7 C -0.142 4.142 8 C 0.072 3.928 9 H 0.039 0.961 10 N -0.677 5.677 11 C 0.194 3.806 12 C -0.514 4.514 13 H 0.062 0.938 14 C 0.056 3.944 15 N -0.899 5.899 16 Si 0.900 3.100 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.276 1.276 20 C 0.052 3.948 21 H 0.054 0.946 22 H 0.061 0.939 23 H 0.056 0.944 24 H 0.073 0.927 25 H 0.031 0.969 26 H 0.074 0.926 27 H 0.043 0.957 28 H 0.059 0.941 29 H 0.054 0.946 30 H 0.050 0.950 31 H 0.330 0.670 32 H 0.027 0.973 33 H -0.016 1.016 34 H 0.262 0.738 35 H 0.091 0.909 36 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.810 -0.756 -1.039 14.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.084 4.084 3 N -0.254 5.254 4 C -0.078 4.078 5 C -0.125 4.125 6 H 0.109 0.891 7 C -0.199 4.199 8 C -0.039 4.039 9 H 0.057 0.943 10 N -0.308 5.308 11 C 0.068 3.932 12 C -0.553 4.553 13 H 0.080 0.920 14 C -0.145 4.145 15 N -0.538 5.538 16 Si 0.727 3.273 17 H -0.203 1.203 18 H -0.214 1.214 19 H -0.201 1.201 20 C -0.076 4.076 21 H 0.073 0.927 22 H 0.081 0.919 23 H 0.075 0.925 24 H 0.092 0.908 25 H 0.050 0.950 26 H 0.093 0.907 27 H 0.061 0.939 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.148 0.852 32 H 0.046 0.954 33 H 0.002 0.998 34 H 0.071 0.929 35 H 0.109 0.891 36 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -14.692 -0.869 -2.136 14.872 hybrid contribution 1.041 0.011 1.694 1.989 sum -13.651 -0.859 -0.442 13.686 Atomic orbital electron populations 1.21879 0.95326 1.01445 1.02344 1.22278 0.95445 0.90017 1.00681 1.63734 1.04938 1.10515 1.46221 1.23024 0.97075 0.94941 0.92779 1.22468 0.94513 0.98494 0.97009 0.89101 1.21726 1.01482 1.01015 0.95704 1.22695 0.90936 0.94472 0.95839 0.94330 1.60685 1.01569 1.06278 1.62267 1.19587 0.85736 0.94596 0.93300 1.21154 0.91096 1.00772 1.42290 0.91977 1.24988 0.99102 0.95232 0.95217 1.69955 1.22987 1.16848 1.44042 0.86537 0.81609 0.80424 0.78683 1.20273 1.21360 1.20114 1.22892 0.86734 0.98710 0.99223 0.92659 0.91942 0.92532 0.90833 0.95045 0.90743 0.93877 0.92188 0.92674 0.93055 0.85218 0.95441 0.99780 0.92873 0.89068 0.93409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 9.58 37.16 0.36 -1.21 16 2 C 0.04 0.56 5.54 -3.82 -0.02 0.54 16 3 N -0.53 -7.96 5.31 -231.24 -1.23 -9.19 16 4 C 0.05 0.67 4.77 -2.30 -0.01 0.66 16 5 C -0.11 -1.55 3.07 -88.48 -0.27 -1.83 16 6 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 7 C -0.14 -1.82 9.31 37.16 0.35 -1.47 16 8 C 0.07 1.33 2.70 -65.89 -0.18 1.15 16 9 H 0.04 0.76 7.79 -51.93 -0.40 0.35 16 10 N -0.68 -14.67 6.28 -106.07 -0.67 -15.34 16 11 C 0.19 5.15 5.29 -4.97 -0.03 5.13 16 12 C -0.51 -14.71 9.32 -34.44 -0.32 -15.03 16 13 H 0.06 1.74 7.81 -52.49 -0.41 1.33 16 14 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 15 N -0.90 -27.09 13.29 55.43 0.74 -26.36 16 16 Si 0.90 21.84 29.54 -169.99 -5.02 16.82 16 17 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 18 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 19 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 20 C 0.05 0.93 6.56 -2.84 -0.02 0.91 16 21 H 0.05 0.55 6.48 -51.93 -0.34 0.22 16 22 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 23 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 24 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 25 H 0.03 0.42 7.96 -51.93 -0.41 0.00 16 26 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.04 0.55 6.87 -51.93 -0.36 0.20 16 28 H 0.06 0.81 8.12 -51.93 -0.42 0.39 16 29 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.05 0.65 8.07 -51.93 -0.42 0.23 16 31 H 0.33 6.84 8.47 -39.29 -0.33 6.51 16 32 H 0.03 0.79 8.13 -51.93 -0.42 0.36 16 33 H -0.02 -0.44 8.08 -51.93 -0.42 -0.86 16 34 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 35 H 0.09 1.78 8.03 -51.93 -0.42 1.36 16 36 H 0.05 0.86 7.49 -51.93 -0.39 0.47 16 LS Contribution 287.81 15.07 4.34 4.34 Total: -1.00 -29.66 287.81 -8.50 -38.15 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: -6.41 Total: 1.20 kcal Atomic # 6 Polarization: -9.39 SS G_CDS: -0.24 Total: -9.64 kcal Atomic # 7 Polarization: -49.72 SS G_CDS: -1.16 Total: -50.88 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -29.66 -8.50 -38.15 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379414131.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.724 kcal (2) G-P(sol) polarization free energy of solvation -29.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds