Wall clock time and date at job start Mon Mar 30 2020 03:33:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46900 * 109.47202 * 2 1 4 4 C 1.47843 * 111.00412 * 49.15372 * 3 2 1 5 5 C 1.54906 * 104.79693 * 146.36281 * 4 3 2 6 6 H 1.08997 * 110.98897 * 81.02271 * 5 4 3 7 7 C 1.53000 * 110.99222 * 204.83887 * 5 4 3 8 8 C 1.55138 * 101.65389 * 322.93081 * 5 4 3 9 9 H 1.08996 * 110.85576 * 277.19916 * 8 5 4 10 10 N 1.46906 * 110.70441 * 154.03600 * 8 5 4 11 11 C 1.46901 * 110.99793 * 159.94952 * 10 8 5 12 12 C 1.50701 * 109.46921 * 179.97438 * 11 10 8 13 13 H 1.07998 * 120.00129 * 0.02562 * 12 11 10 14 14 C 1.37880 * 119.99861 * 179.97438 * 12 11 10 15 15 N 1.31510 * 119.99913 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 119.99734 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.47294 * 60.00559 * 16 14 12 18 18 H 1.48503 * 109.46954 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47431 * 300.00157 * 16 14 12 20 20 C 1.47449 * 110.99947 * 169.99641 * 3 2 1 21 21 H 1.09001 * 109.46709 * 300.00550 * 1 2 3 22 22 H 1.09000 * 109.46413 * 60.00026 * 1 2 3 23 23 H 1.08992 * 109.47476 * 180.02562 * 1 2 3 24 24 H 1.08994 * 109.47327 * 239.99691 * 2 1 3 25 25 H 1.09004 * 109.46832 * 119.99366 * 2 1 3 26 26 H 1.08999 * 110.37552 * 265.19356 * 4 3 2 27 27 H 1.09007 * 110.37219 * 27.53442 * 4 3 2 28 28 H 1.08994 * 109.47236 * 172.26868 * 7 5 4 29 29 H 1.09004 * 109.47181 * 292.27536 * 7 5 4 30 30 H 1.09005 * 109.46720 * 52.26774 * 7 5 4 31 31 H 1.00899 * 110.99995 * 35.99350 * 10 8 5 32 32 H 1.09002 * 109.47401 * 59.99808 * 11 10 8 33 33 H 1.09001 * 109.46874 * 299.99821 * 11 10 8 34 34 H 0.97002 * 119.99768 * 179.97438 * 15 14 12 35 35 H 1.09006 * 109.88498 * 117.33464 * 20 3 2 36 36 H 1.09001 * 109.88989 * 356.14795 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.3453 2.1855 1.0441 5 6 2.4201 3.1906 1.5280 6 1 2.4945 4.0397 0.8487 7 6 2.1306 3.6574 2.9559 8 6 3.7056 2.3235 1.4766 9 1 3.8006 1.7167 2.3770 10 7 4.8942 3.1673 1.2935 11 6 6.1119 2.4587 1.7095 12 6 7.3076 3.3533 1.5070 13 1 7.1761 4.3488 1.1094 14 6 8.5695 2.9012 1.8302 15 7 8.7296 1.6892 2.3148 16 14 10.0514 4.0104 1.5798 17 1 9.8918 5.2415 2.3949 18 1 11.2825 3.2941 2.0003 19 1 10.1585 4.3773 0.1448 20 6 3.4739 1.4313 0.2391 21 1 -0.3633 0.5139 0.8900 22 1 -0.3632 0.5138 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 1.8934 -0.5138 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 0.4916 2.7164 0.6229 27 1 1.0268 1.5451 1.8667 28 1 2.9681 4.2521 3.3206 29 1 1.2244 4.2631 2.9635 30 1 1.9930 2.7896 3.6010 31 1 4.7972 4.0410 1.7887 32 1 6.2290 1.5552 1.1110 33 1 6.0335 2.1892 2.7627 34 1 9.6174 1.3710 2.5418 35 1 3.9786 1.8598 -0.6268 36 1 3.8504 0.4264 0.4307 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379414131.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:17 Heat of formation + Delta-G solvation = -27.872036 kcal Electronic energy + Delta-G solvation = -14486.744002 eV Core-core repulsion = 12197.222454 eV Total energy + Delta-G solvation = -2289.521548 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.49960 -36.82385 -35.00417 -33.57537 -31.59272 -29.35666 -27.56372 -26.62463 -24.18593 -22.88216 -21.23102 -21.20342 -18.58994 -17.26134 -16.70630 -16.55150 -15.85636 -15.49271 -15.03020 -14.93739 -14.25587 -13.94993 -13.84417 -13.59666 -13.29953 -13.05949 -12.84776 -12.65462 -12.46613 -12.23855 -12.10040 -11.98633 -11.90890 -11.70525 -11.43512 -11.16420 -10.67850 -9.38025 -9.10553 -8.24074 -6.35812 1.40679 1.44672 1.52629 2.39237 2.98491 3.09332 3.46328 3.58259 3.75718 4.14786 4.19024 4.27129 4.31141 4.46483 4.51509 4.60654 4.64757 4.81984 4.86165 4.95171 4.97223 5.03957 5.08449 5.19671 5.23297 5.24169 5.30762 5.36952 5.62056 5.96335 6.00737 6.16118 6.42712 6.69930 6.86745 7.35482 8.87555 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.048476 B = 0.006343 C = 0.005905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.464903 B = 4413.439276 C = 4740.234769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.039 3.961 3 N -0.534 5.534 4 C 0.054 3.946 5 C -0.096 4.096 6 H 0.088 0.912 7 C -0.137 4.137 8 C 0.067 3.933 9 H 0.023 0.977 10 N -0.674 5.674 11 C 0.212 3.788 12 C -0.537 4.537 13 H 0.066 0.934 14 C 0.001 3.999 15 N -0.935 5.935 16 Si 0.975 3.025 17 H -0.265 1.265 18 H -0.282 1.282 19 H -0.268 1.268 20 C 0.059 3.941 21 H 0.061 0.939 22 H 0.064 0.936 23 H 0.073 0.927 24 H 0.072 0.928 25 H 0.025 0.975 26 H 0.098 0.902 27 H 0.054 0.946 28 H 0.048 0.952 29 H 0.083 0.917 30 H 0.052 0.948 31 H 0.337 0.663 32 H -0.003 1.003 33 H -0.043 1.043 34 H 0.265 0.735 35 H 0.068 0.932 36 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.026 0.337 -1.163 16.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.089 4.089 3 N -0.259 5.259 4 C -0.073 4.073 5 C -0.115 4.115 6 H 0.106 0.894 7 C -0.195 4.195 8 C -0.045 4.045 9 H 0.041 0.959 10 N -0.305 5.305 11 C 0.084 3.916 12 C -0.575 4.575 13 H 0.084 0.916 14 C -0.197 4.197 15 N -0.576 5.576 16 Si 0.799 3.201 17 H -0.189 1.189 18 H -0.208 1.208 19 H -0.193 1.193 20 C -0.070 4.070 21 H 0.080 0.920 22 H 0.083 0.917 23 H 0.092 0.908 24 H 0.091 0.909 25 H 0.043 0.957 26 H 0.116 0.884 27 H 0.072 0.928 28 H 0.067 0.933 29 H 0.102 0.898 30 H 0.071 0.929 31 H 0.155 0.845 32 H 0.015 0.985 33 H -0.026 1.026 34 H 0.074 0.926 35 H 0.086 0.914 36 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -15.943 0.232 -2.263 16.105 hybrid contribution 1.365 -0.382 1.722 2.230 sum -14.578 -0.150 -0.541 14.589 Atomic orbital electron populations 1.21827 0.92798 1.02807 1.02740 1.22386 0.97490 0.88607 1.00374 1.63742 1.03023 1.12183 1.46920 1.23104 0.96910 0.94526 0.92798 1.22436 0.92564 0.98072 0.98471 0.89350 1.21706 1.02386 1.01322 0.94079 1.22792 0.91366 0.94905 0.95424 0.95893 1.60555 1.01333 1.06626 1.61953 1.19196 0.87743 0.93671 0.90949 1.21520 0.92164 1.01195 1.42660 0.91607 1.25977 1.02468 0.96747 0.94491 1.70092 1.23961 1.18769 1.44732 0.85354 0.77272 0.78496 0.78979 1.18937 1.20772 1.19314 1.22685 0.88874 0.97612 0.97828 0.92003 0.91690 0.90788 0.90947 0.95702 0.88407 0.92802 0.93277 0.89771 0.92920 0.84496 0.98482 1.02557 0.92595 0.91354 0.94679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.59 9.58 71.98 0.69 -1.90 16 2 C 0.04 0.96 5.54 86.30 0.48 1.44 16 3 N -0.53 -15.54 5.31 -885.52 -4.71 -20.25 16 4 C 0.05 1.33 4.77 86.77 0.41 1.74 16 5 C -0.10 -2.70 3.07 -9.41 -0.03 -2.73 16 6 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 7 C -0.14 -3.25 9.31 71.98 0.67 -2.58 16 8 C 0.07 2.48 2.70 46.09 0.12 2.61 16 9 H 0.02 0.94 7.79 -2.39 -0.02 0.92 16 10 N -0.67 -29.98 6.28 -489.48 -3.07 -33.06 16 11 C 0.21 11.73 5.29 85.56 0.45 12.18 16 12 C -0.54 -31.25 9.32 25.60 0.24 -31.01 16 13 H 0.07 3.70 7.81 -2.91 -0.02 3.67 16 14 C 0.00 0.08 5.46 84.66 0.46 0.54 16 15 N -0.94 -57.49 13.29 21.45 0.28 -57.20 16 16 Si 0.98 44.75 29.54 68.60 2.03 46.78 16 17 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 18 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 19 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 20 C 0.06 2.14 6.56 86.64 0.57 2.71 16 21 H 0.06 1.04 6.48 -2.39 -0.02 1.02 16 22 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 23 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 24 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 25 H 0.02 0.64 7.96 -2.39 -0.02 0.62 16 26 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 27 H 0.05 1.23 6.87 -2.38 -0.02 1.21 16 28 H 0.05 1.27 8.12 -2.39 -0.02 1.25 16 29 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.05 1.23 8.07 -2.38 -0.02 1.21 16 31 H 0.34 14.12 8.47 -89.69 -0.76 13.36 16 32 H 0.00 -0.18 8.13 -2.39 -0.02 -0.20 16 33 H -0.04 -2.57 8.08 -2.39 -0.02 -2.59 16 34 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 35 H 0.07 2.78 8.03 -2.38 -0.02 2.76 16 36 H 0.03 1.32 7.49 -2.39 -0.02 1.31 16 Total: -1.00 -64.51 287.81 -1.13 -65.64 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: 0.27 Total: 15.08 kcal Atomic # 6 Polarization: -21.07 SS G_CDS: 4.07 Total: -17.00 kcal Atomic # 7 Polarization: -103.01 SS G_CDS: -7.49 Total: -110.51 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Total: -64.51 -1.13 -65.64 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379414131.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.769 kcal (2) G-P(sol) polarization free energy of solvation -64.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds