Wall clock time and date at job start Mon Mar 30 2020 03:33:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46899 * 109.46905 * 2 1 4 4 C 1.48565 * 111.00161 * 290.12651 * 3 2 1 5 5 C 1.54379 * 104.59437 * 200.96481 * 4 3 2 6 6 H 1.08998 * 110.32081 * 264.95400 * 5 4 3 7 7 C 1.52999 * 110.40986 * 142.79348 * 5 4 3 8 8 C 1.54258 * 105.06115 * 23.84926 * 5 4 3 9 9 H 1.08996 * 110.32494 * 240.99889 * 8 5 4 10 10 N 1.46904 * 110.32024 * 118.90089 * 8 5 4 11 11 C 1.46899 * 111.00029 * 156.42754 * 10 8 5 12 12 C 1.50703 * 109.47107 * 179.97438 * 11 10 8 13 13 H 1.07996 * 119.99751 * 359.97438 * 12 11 10 14 14 C 1.37877 * 120.00001 * 180.02562 * 12 11 10 15 15 N 1.31517 * 120.00094 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99955 * 180.02562 * 14 12 11 17 17 H 1.48494 * 109.47116 * 59.99536 * 16 14 12 18 18 H 1.48500 * 109.46585 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.46730 * 299.99515 * 16 14 12 20 20 C 1.48728 * 111.01428 * 174.62083 * 3 2 1 21 21 H 1.09005 * 109.46840 * 299.99877 * 1 2 3 22 22 H 1.09001 * 109.47351 * 59.99765 * 1 2 3 23 23 H 1.08995 * 109.46899 * 179.97438 * 1 2 3 24 24 H 1.09005 * 109.46840 * 240.00123 * 2 1 3 25 25 H 1.09001 * 109.47351 * 120.00235 * 2 1 3 26 26 H 1.08995 * 110.41186 * 82.18087 * 4 3 2 27 27 H 1.08997 * 110.50924 * 319.79147 * 4 3 2 28 28 H 1.08996 * 109.47385 * 304.31159 * 7 5 4 29 29 H 1.09000 * 109.47121 * 64.31063 * 7 5 4 30 30 H 1.09001 * 109.46951 * 184.30391 * 7 5 4 31 31 H 1.00908 * 110.99583 * 280.37666 * 10 8 5 32 32 H 1.09002 * 109.47043 * 299.99792 * 11 10 8 33 33 H 1.09001 * 109.47354 * 59.99854 * 11 10 8 34 34 H 0.97000 * 120.00333 * 179.97438 * 15 14 12 35 35 H 1.08995 * 110.38621 * 40.23950 * 20 3 2 36 36 H 1.08998 * 110.50327 * 277.75204 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7472 2.0461 -1.3023 5 6 2.7453 3.2225 -1.3577 6 1 2.2719 4.1376 -1.0022 7 6 3.2657 3.4139 -2.7837 8 6 3.8978 2.8150 -0.4169 9 1 3.9914 3.5311 0.3995 10 7 5.1595 2.7269 -1.1641 11 6 6.3133 2.8978 -0.2711 12 6 7.5866 2.8009 -1.0714 13 1 7.5431 2.6291 -2.1367 14 6 8.8072 2.9305 -0.4433 15 7 8.8602 3.1392 0.8541 16 14 10.3855 2.8111 -1.4354 17 1 10.4004 3.8747 -2.4716 18 1 11.5518 2.9838 -0.5325 19 1 10.4587 1.4805 -2.0905 20 6 3.5006 1.4271 0.1302 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5139 0.8900 26 1 0.7222 2.4153 -1.3340 27 1 1.9273 1.3555 -2.1261 28 1 3.7022 2.4807 -3.1396 29 1 2.4410 3.7012 -3.4359 30 1 4.0246 4.1963 -2.7915 31 1 5.2199 1.8560 -1.6703 32 1 6.2592 3.8746 0.2095 33 1 6.3026 2.1174 0.4898 34 1 9.7189 3.2300 1.2961 35 1 3.9569 0.6381 -0.4675 36 1 3.7949 1.3320 1.1753 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379414133.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:23 Heat of formation + Delta-G solvation = -2.455608 kcal Electronic energy + Delta-G solvation = -14546.371700 eV Core-core repulsion = 12257.952291 eV Total energy + Delta-G solvation = -2288.419409 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.20975 -35.22431 -33.23102 -31.73798 -30.34288 -27.73601 -25.73509 -25.22492 -22.37888 -21.64078 -20.71324 -18.97058 -16.56259 -15.85943 -15.21461 -14.74085 -14.63626 -14.21095 -13.40125 -13.08902 -12.79665 -12.72607 -12.28097 -12.10329 -11.85877 -11.50055 -11.37625 -11.14664 -10.84358 -10.78544 -10.69213 -10.56436 -10.30200 -10.05946 -9.83913 -9.15689 -8.48505 -8.36012 -7.25745 -6.02533 -4.04699 3.33484 3.37539 3.40477 4.13129 4.43755 4.90147 4.91095 5.13193 5.26650 5.33017 5.33686 5.47536 5.53489 5.64090 5.74492 5.80629 5.88734 5.92823 5.99242 6.06531 6.13573 6.19531 6.43096 6.47141 6.66796 6.86021 7.01798 7.19240 7.29755 7.44471 7.79210 8.14162 8.38883 8.61678 9.04372 9.60197 11.08416 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.048235 B = 0.006444 C = 0.006064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.356461 B = 4343.857431 C = 4616.400346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.039 3.961 3 N -0.512 5.512 4 C 0.036 3.964 5 C -0.089 4.089 6 H 0.072 0.928 7 C -0.119 4.119 8 C 0.087 3.913 9 H 0.080 0.920 10 N -0.675 5.675 11 C 0.193 3.807 12 C -0.515 4.515 13 H 0.061 0.939 14 C 0.056 3.944 15 N -0.898 5.898 16 Si 0.899 3.101 17 H -0.276 1.276 18 H -0.288 1.288 19 H -0.278 1.278 20 C 0.008 3.992 21 H 0.061 0.939 22 H 0.052 0.948 23 H 0.054 0.946 24 H 0.032 0.968 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.041 0.959 28 H 0.050 0.950 29 H 0.034 0.966 30 H 0.072 0.928 31 H 0.327 0.673 32 H 0.028 0.972 33 H -0.014 1.014 34 H 0.262 0.738 35 H 0.043 0.957 36 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.892 -4.065 -3.169 14.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.090 4.090 3 N -0.236 5.236 4 C -0.092 4.092 5 C -0.108 4.108 6 H 0.091 0.909 7 C -0.177 4.177 8 C -0.025 4.025 9 H 0.099 0.901 10 N -0.305 5.305 11 C 0.067 3.933 12 C -0.554 4.554 13 H 0.079 0.921 14 C -0.145 4.145 15 N -0.537 5.537 16 Si 0.726 3.274 17 H -0.202 1.202 18 H -0.214 1.214 19 H -0.203 1.203 20 C -0.122 4.122 21 H 0.080 0.920 22 H 0.071 0.929 23 H 0.073 0.927 24 H 0.050 0.950 25 H 0.089 0.911 26 H 0.091 0.909 27 H 0.059 0.941 28 H 0.069 0.931 29 H 0.053 0.947 30 H 0.091 0.909 31 H 0.145 0.855 32 H 0.046 0.954 33 H 0.004 0.996 34 H 0.071 0.929 35 H 0.061 0.939 36 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -14.019 -3.109 -2.755 14.621 hybrid contribution 1.332 -1.469 -0.505 2.046 sum -12.687 -4.578 -3.260 13.876 Atomic orbital electron populations 1.21733 0.95024 1.01137 1.02339 1.22224 0.96062 0.90054 1.00672 1.65398 1.12054 1.15113 1.31084 1.23230 0.99611 0.96137 0.90199 1.21939 0.94715 0.97229 0.96965 0.90912 1.21485 0.99662 1.02789 0.93800 1.22289 0.90912 0.94375 0.94923 0.90124 1.60867 1.01106 1.39802 1.28686 1.19589 0.86708 0.96099 0.90944 1.21146 0.90324 1.49096 0.94792 0.92112 1.24982 0.99260 0.95347 0.94915 1.69952 1.25556 1.49581 1.08610 0.86555 0.82431 0.78578 0.79788 1.20163 1.21350 1.20338 1.23964 0.87434 0.99006 1.01798 0.91967 0.92869 0.92658 0.94959 0.91050 0.90853 0.94077 0.93095 0.94720 0.90941 0.85529 0.95405 0.99604 0.92868 0.93898 0.90432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.48 9.97 37.16 0.37 -1.11 16 2 C 0.04 0.48 5.53 -3.82 -0.02 0.46 16 3 N -0.51 -7.47 5.37 -229.83 -1.23 -8.70 16 4 C 0.04 0.49 5.29 -2.18 -0.01 0.48 16 5 C -0.09 -1.35 3.65 -89.24 -0.33 -1.67 16 6 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 7 C -0.12 -1.78 8.12 37.16 0.30 -1.48 16 8 C 0.09 1.57 3.35 -66.33 -0.22 1.35 16 9 H 0.08 1.57 7.84 -51.93 -0.41 1.16 16 10 N -0.68 -14.16 4.54 -106.53 -0.48 -14.65 16 11 C 0.19 5.02 5.28 -4.98 -0.03 5.00 16 12 C -0.51 -14.54 9.32 -34.44 -0.32 -14.86 16 13 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 14 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 15 N -0.90 -26.89 13.29 55.43 0.74 -26.15 16 16 Si 0.90 21.72 29.54 -169.99 -5.02 16.70 16 17 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 18 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 19 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 20 C 0.01 0.13 6.15 -2.09 -0.01 0.12 16 21 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 22 H 0.05 0.53 7.26 -51.93 -0.38 0.16 16 23 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 24 H 0.03 0.40 7.88 -51.93 -0.41 -0.01 16 25 H 0.07 0.87 8.13 -51.93 -0.42 0.45 16 26 H 0.07 0.90 7.76 -51.93 -0.40 0.50 16 27 H 0.04 0.55 7.52 -51.93 -0.39 0.16 16 28 H 0.05 0.78 7.48 -51.93 -0.39 0.39 16 29 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.07 1.22 7.84 -51.93 -0.41 0.81 16 31 H 0.33 6.69 7.66 -39.29 -0.30 6.39 16 32 H 0.03 0.79 8.07 -51.93 -0.42 0.37 16 33 H -0.01 -0.38 8.14 -51.93 -0.42 -0.81 16 34 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 35 H 0.04 0.73 7.43 -51.93 -0.39 0.34 16 36 H 0.08 1.35 8.14 -51.93 -0.42 0.92 16 LS Contribution 286.00 15.07 4.31 4.31 Total: -1.00 -28.96 286.00 -8.45 -37.41 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: -6.39 Total: 1.29 kcal Atomic # 6 Polarization: -9.84 SS G_CDS: -0.37 Total: -10.21 kcal Atomic # 7 Polarization: -48.52 SS G_CDS: -0.98 Total: -49.50 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -28.96 -8.45 -37.41 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379414133.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.954 kcal (2) G-P(sol) polarization free energy of solvation -28.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds