Wall clock time and date at job start Mon Mar 30 2020 03:33:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46899 * 109.46905 * 2 1 4 4 C 1.48565 * 111.00161 * 290.12651 * 3 2 1 5 5 C 1.54379 * 104.59437 * 200.96481 * 4 3 2 6 6 H 1.08998 * 110.32081 * 264.95400 * 5 4 3 7 7 C 1.52999 * 110.40986 * 142.79348 * 5 4 3 8 8 C 1.54258 * 105.06115 * 23.84926 * 5 4 3 9 9 H 1.08996 * 110.32494 * 240.99889 * 8 5 4 10 10 N 1.46904 * 110.32024 * 118.90089 * 8 5 4 11 11 C 1.46899 * 111.00029 * 156.42754 * 10 8 5 12 12 C 1.50703 * 109.47107 * 179.97438 * 11 10 8 13 13 H 1.07996 * 119.99751 * 359.97438 * 12 11 10 14 14 C 1.37877 * 120.00001 * 180.02562 * 12 11 10 15 15 N 1.31517 * 120.00094 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99955 * 180.02562 * 14 12 11 17 17 H 1.48494 * 109.47116 * 59.99536 * 16 14 12 18 18 H 1.48500 * 109.46585 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.46730 * 299.99515 * 16 14 12 20 20 C 1.48728 * 111.01428 * 174.62083 * 3 2 1 21 21 H 1.09005 * 109.46840 * 299.99877 * 1 2 3 22 22 H 1.09001 * 109.47351 * 59.99765 * 1 2 3 23 23 H 1.08995 * 109.46899 * 179.97438 * 1 2 3 24 24 H 1.09005 * 109.46840 * 240.00123 * 2 1 3 25 25 H 1.09001 * 109.47351 * 120.00235 * 2 1 3 26 26 H 1.08995 * 110.41186 * 82.18087 * 4 3 2 27 27 H 1.08997 * 110.50924 * 319.79147 * 4 3 2 28 28 H 1.08996 * 109.47385 * 304.31159 * 7 5 4 29 29 H 1.09000 * 109.47121 * 64.31063 * 7 5 4 30 30 H 1.09001 * 109.46951 * 184.30391 * 7 5 4 31 31 H 1.00908 * 110.99583 * 280.37666 * 10 8 5 32 32 H 1.09002 * 109.47043 * 299.99792 * 11 10 8 33 33 H 1.09001 * 109.47354 * 59.99854 * 11 10 8 34 34 H 0.97000 * 120.00333 * 179.97438 * 15 14 12 35 35 H 1.08995 * 110.38621 * 40.23950 * 20 3 2 36 36 H 1.08998 * 110.50327 * 277.75204 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7472 2.0461 -1.3023 5 6 2.7453 3.2225 -1.3577 6 1 2.2719 4.1376 -1.0022 7 6 3.2657 3.4139 -2.7837 8 6 3.8978 2.8150 -0.4169 9 1 3.9914 3.5311 0.3995 10 7 5.1595 2.7269 -1.1641 11 6 6.3133 2.8978 -0.2711 12 6 7.5866 2.8009 -1.0714 13 1 7.5431 2.6291 -2.1367 14 6 8.8072 2.9305 -0.4433 15 7 8.8602 3.1392 0.8541 16 14 10.3855 2.8111 -1.4354 17 1 10.4004 3.8747 -2.4716 18 1 11.5518 2.9838 -0.5325 19 1 10.4587 1.4805 -2.0905 20 6 3.5006 1.4271 0.1302 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5139 0.8900 26 1 0.7222 2.4153 -1.3340 27 1 1.9273 1.3555 -2.1261 28 1 3.7022 2.4807 -3.1396 29 1 2.4410 3.7012 -3.4359 30 1 4.0246 4.1963 -2.7915 31 1 5.2199 1.8560 -1.6703 32 1 6.2592 3.8746 0.2095 33 1 6.3026 2.1174 0.4898 34 1 9.7189 3.2300 1.2961 35 1 3.9569 0.6381 -0.4675 36 1 3.7949 1.3320 1.1753 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379414133.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:22 Heat of formation + Delta-G solvation = -22.312098 kcal Electronic energy + Delta-G solvation = -14547.232742 eV Core-core repulsion = 12257.952291 eV Total energy + Delta-G solvation = -2289.280451 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.51138 -36.76263 -34.99101 -33.47012 -31.46275 -29.42188 -27.20406 -26.68240 -23.91694 -23.33011 -21.86091 -20.37682 -18.52997 -17.39534 -16.64423 -16.33707 -15.91569 -15.69877 -14.84231 -14.60273 -14.27105 -14.01929 -13.93967 -13.45634 -13.13925 -13.01744 -12.86020 -12.65975 -12.45549 -12.29767 -11.97688 -11.86894 -11.82026 -11.66330 -11.36270 -11.14047 -10.65877 -9.53798 -9.04975 -8.21986 -6.33436 1.41027 1.44612 1.52585 2.39932 2.96851 3.11410 3.56253 3.67318 3.85563 4.09156 4.20429 4.24714 4.39388 4.49962 4.59373 4.64249 4.75802 4.84472 4.89951 4.93120 4.97039 5.05253 5.12183 5.22044 5.32518 5.35285 5.42214 5.61064 5.63180 5.81858 6.03523 6.09240 6.45284 6.71964 6.89024 7.37620 8.89337 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.048235 B = 0.006444 C = 0.006064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.356461 B = 4343.857431 C = 4616.400346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.035 3.965 3 N -0.517 5.517 4 C 0.043 3.957 5 C -0.084 4.084 6 H 0.080 0.920 7 C -0.113 4.113 8 C 0.081 3.919 9 H 0.058 0.942 10 N -0.667 5.667 11 C 0.210 3.790 12 C -0.535 4.535 13 H 0.065 0.935 14 C 0.002 3.998 15 N -0.935 5.935 16 Si 0.973 3.027 17 H -0.268 1.268 18 H -0.283 1.283 19 H -0.266 1.266 20 C 0.016 3.984 21 H 0.058 0.942 22 H 0.058 0.942 23 H 0.073 0.927 24 H 0.035 0.965 25 H 0.068 0.932 26 H 0.096 0.904 27 H 0.048 0.952 28 H 0.045 0.955 29 H 0.063 0.937 30 H 0.048 0.952 31 H 0.332 0.668 32 H -0.004 1.004 33 H -0.040 1.040 34 H 0.265 0.735 35 H 0.039 0.961 36 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.859 -4.702 -4.710 16.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.094 4.094 3 N -0.242 5.242 4 C -0.084 4.084 5 C -0.103 4.103 6 H 0.098 0.902 7 C -0.171 4.171 8 C -0.031 4.031 9 H 0.077 0.923 10 N -0.296 5.296 11 C 0.082 3.918 12 C -0.573 4.573 13 H 0.083 0.917 14 C -0.197 4.197 15 N -0.575 5.575 16 Si 0.797 3.203 17 H -0.193 1.193 18 H -0.209 1.209 19 H -0.191 1.191 20 C -0.114 4.114 21 H 0.077 0.923 22 H 0.077 0.923 23 H 0.092 0.908 24 H 0.053 0.947 25 H 0.087 0.913 26 H 0.114 0.886 27 H 0.066 0.934 28 H 0.064 0.936 29 H 0.082 0.918 30 H 0.067 0.933 31 H 0.150 0.850 32 H 0.015 0.985 33 H -0.022 1.022 34 H 0.073 0.927 35 H 0.057 0.943 36 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -15.020 -3.754 -4.308 16.070 hybrid contribution 1.563 -1.267 0.012 2.012 sum -13.457 -5.021 -4.296 14.992 Atomic orbital electron populations 1.21690 0.92945 1.02456 1.02442 1.22335 0.97703 0.88606 1.00710 1.65416 1.09977 1.16831 1.31964 1.23233 1.00106 0.95277 0.89818 1.21919 0.93683 0.98389 0.96320 0.90198 1.21408 1.00002 1.01698 0.94023 1.22354 0.90628 0.94987 0.95130 0.92340 1.60770 1.00795 1.40122 1.27945 1.19203 0.88455 0.93373 0.90740 1.21513 0.91406 1.49255 0.95160 0.91716 1.25951 1.03111 0.94614 0.95991 1.70091 1.26627 1.50310 1.10454 0.85385 0.77586 0.79115 0.78198 1.19308 1.20875 1.19116 1.23724 0.89362 0.97702 1.00626 0.92289 0.92273 0.90808 0.94710 0.91304 0.88606 0.93379 0.93610 0.91835 0.93324 0.84961 0.98549 1.02232 0.92658 0.94325 0.91947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 9.97 71.98 0.72 -1.72 16 2 C 0.03 0.80 5.53 86.31 0.48 1.27 16 3 N -0.52 -14.36 5.37 -881.04 -4.73 -19.09 16 4 C 0.04 1.07 5.29 86.45 0.46 1.52 16 5 C -0.08 -2.42 3.65 -9.90 -0.04 -2.46 16 6 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 7 C -0.11 -3.19 8.12 71.98 0.58 -2.61 16 8 C 0.08 2.95 3.35 45.81 0.15 3.10 16 9 H 0.06 2.38 7.84 -2.39 -0.02 2.37 16 10 N -0.67 -28.63 4.54 -490.96 -2.23 -30.85 16 11 C 0.21 11.38 5.28 85.56 0.45 11.84 16 12 C -0.54 -30.69 9.32 25.60 0.24 -30.45 16 13 H 0.06 3.58 7.81 -2.91 -0.02 3.56 16 14 C 0.00 0.09 5.46 84.65 0.46 0.55 16 15 N -0.93 -57.11 13.29 21.45 0.28 -56.83 16 16 Si 0.97 44.49 29.54 68.60 2.03 46.52 16 17 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 18 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 19 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 20 C 0.02 0.54 6.15 86.41 0.53 1.07 16 21 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 22 H 0.06 0.98 7.26 -2.39 -0.02 0.96 16 23 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 24 H 0.03 0.79 7.88 -2.38 -0.02 0.77 16 25 H 0.07 1.60 8.13 -2.39 -0.02 1.58 16 26 H 0.10 2.00 7.76 -2.39 -0.02 1.98 16 27 H 0.05 1.14 7.52 -2.39 -0.02 1.13 16 28 H 0.04 1.32 7.48 -2.39 -0.02 1.30 16 29 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.05 1.60 7.84 -2.39 -0.02 1.58 16 31 H 0.33 13.71 7.66 -89.69 -0.69 13.03 16 32 H 0.00 -0.22 8.07 -2.39 -0.02 -0.24 16 33 H -0.04 -2.33 8.14 -2.39 -0.02 -2.35 16 34 H 0.26 15.21 8.31 -92.71 -0.77 14.43 16 35 H 0.04 1.32 7.43 -2.39 -0.02 1.30 16 36 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 Total: -1.00 -62.55 286.00 -0.27 -62.82 By element: Atomic # 1 Polarization: 14.98 SS G_CDS: 0.34 Total: 15.32 kcal Atomic # 6 Polarization: -21.92 SS G_CDS: 4.04 Total: -17.88 kcal Atomic # 7 Polarization: -100.10 SS G_CDS: -6.67 Total: -106.77 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Total: -62.55 -0.27 -62.82 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379414133.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.505 kcal (2) G-P(sol) polarization free energy of solvation -62.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds