Wall clock time and date at job start Mon Mar 30 2020 03:17:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47227 * 2 1 4 4 N 1.46905 * 109.47261 * 120.00083 * 2 1 3 5 5 C 1.47957 * 111.00214 * 180.02562 * 4 2 1 6 6 C 1.53936 * 86.18018 * 222.41607 * 5 4 2 7 7 N 1.46899 * 113.73359 * 138.07724 * 6 5 4 8 8 C 1.46904 * 110.99846 * 154.99818 * 7 6 5 9 9 H 1.09005 * 109.47078 * 34.99919 * 8 7 6 10 10 C 1.53000 * 109.47015 * 275.00091 * 8 7 6 11 11 C 1.50696 * 109.46794 * 154.99634 * 8 7 6 12 12 H 1.07999 * 120.00319 * 0.02562 * 11 8 7 13 13 C 1.37885 * 119.99717 * 179.97438 * 11 8 7 14 14 N 1.31516 * 119.99913 * 180.02562 * 13 11 8 15 15 Si 1.86798 * 119.99766 * 0.02562 * 13 11 8 16 16 H 1.48500 * 109.47353 * 269.99586 * 15 13 11 17 17 H 1.48501 * 109.47293 * 30.00037 * 15 13 11 18 18 H 1.48504 * 109.46680 * 149.99835 * 15 13 11 19 19 C 1.47958 * 111.00075 * 80.63512 * 4 2 1 20 20 H 1.09005 * 109.46888 * 300.00239 * 1 2 3 21 21 H 1.08998 * 109.46944 * 59.99706 * 1 2 3 22 22 H 1.08994 * 109.47082 * 180.02562 * 1 2 3 23 23 H 1.08995 * 109.46942 * 239.99681 * 2 1 3 24 24 H 1.08996 * 109.47080 * 59.99550 * 3 2 1 25 25 H 1.08996 * 109.47174 * 180.02562 * 3 2 1 26 26 H 1.09006 * 109.46783 * 299.99952 * 3 2 1 27 27 H 1.08996 * 113.76384 * 108.09270 * 5 4 2 28 28 H 1.09007 * 113.85528 * 336.74637 * 5 4 2 29 29 H 1.08999 * 113.73037 * 269.25556 * 6 5 4 30 30 H 1.00894 * 111.00040 * 31.04572 * 7 6 5 31 31 H 1.08997 * 109.46749 * 299.99841 * 10 8 7 32 32 H 1.08996 * 109.47024 * 59.99984 * 10 8 7 33 33 H 1.08998 * 109.46637 * 179.97438 * 10 8 7 34 34 H 0.97001 * 119.99646 * 179.97438 * 14 13 11 35 35 H 1.08995 * 113.75912 * 23.26937 * 19 4 2 36 36 H 1.09001 * 113.76052 * 251.90159 * 19 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 3.4988 -0.7117 1.2340 6 6 3.3664 -2.1745 1.6950 7 7 4.3288 -3.0842 1.0591 8 6 4.5768 -4.2613 1.9023 9 1 3.6585 -4.5365 2.4213 10 6 5.6638 -3.9339 2.9281 11 6 5.0299 -5.4107 1.0395 12 1 5.1246 -5.2798 -0.0284 13 6 5.3245 -6.6292 1.6135 14 7 5.7205 -7.6322 0.8606 15 14 5.1614 -6.8554 3.4606 16 1 6.4494 -6.5150 4.1167 17 1 4.0922 -5.9630 3.9760 18 1 4.8128 -8.2681 3.7573 19 6 1.9846 -2.1602 1.0158 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3633 -1.0276 0.0005 23 1 1.8933 -0.5139 -0.8899 24 1 1.6767 1.9563 0.8899 25 1 3.1300 1.4425 -0.0005 26 1 1.6767 1.9563 -0.8901 27 1 3.9292 -0.0512 1.9866 28 1 3.9641 -0.6003 0.2545 29 1 3.3234 -2.2909 2.7779 30 1 5.1905 -2.6058 0.8436 31 1 6.5819 -3.6588 2.4091 32 1 5.3359 -3.1026 3.5521 33 1 5.8474 -4.8072 3.5540 34 1 5.9281 -8.4894 1.2645 35 1 2.0052 -2.4728 -0.0282 36 1 1.2055 -2.6567 1.5944 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000382063775.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:52 Heat of formation + Delta-G solvation = 35.809685 kcal Electronic energy + Delta-G solvation = -14542.983880 eV Core-core repulsion = 12256.223779 eV Total energy + Delta-G solvation = -2286.760101 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.88818 -35.89916 -33.70458 -31.90385 -28.95602 -27.69338 -25.44409 -25.23214 -24.86169 -20.63647 -19.88418 -19.47182 -16.73308 -15.96179 -15.59923 -14.96119 -14.55503 -14.12185 -13.54971 -13.20058 -12.67140 -12.56766 -12.47358 -12.17035 -12.13638 -11.84376 -11.67982 -11.20649 -11.06177 -10.96582 -10.64200 -10.41734 -10.09819 -10.06747 -9.49426 -9.11879 -8.62868 -8.55823 -7.49766 -6.03961 -4.01291 3.26254 3.36768 3.39186 4.07710 4.41249 4.80228 4.83112 4.97870 5.05303 5.26451 5.29065 5.47624 5.55142 5.59289 5.72426 5.77849 5.81221 5.85099 6.01260 6.08619 6.15456 6.18500 6.21428 6.26747 6.40287 6.52255 6.54929 6.78400 7.11344 7.28015 7.72774 7.91814 8.29754 8.69705 9.06810 9.58809 11.09629 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.056306 B = 0.006589 C = 0.006463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 497.160642 B = 4248.763752 C = 4331.038637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.042 3.958 3 C -0.145 4.145 4 N -0.479 5.479 5 C -0.002 4.002 6 C 0.057 3.943 7 N -0.661 5.661 8 C 0.182 3.818 9 H 0.035 0.965 10 C -0.182 4.182 11 C -0.498 4.498 12 H 0.081 0.919 13 C 0.067 3.933 14 N -0.902 5.902 15 Si 0.886 3.114 16 H -0.281 1.281 17 H -0.269 1.269 18 H -0.297 1.297 19 C 0.016 3.984 20 H 0.059 0.941 21 H 0.054 0.946 22 H 0.054 0.946 23 H 0.049 0.951 24 H 0.060 0.940 25 H 0.054 0.946 26 H 0.056 0.944 27 H 0.080 0.920 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.333 0.667 31 H 0.054 0.946 32 H 0.026 0.974 33 H 0.045 0.955 34 H 0.263 0.737 35 H 0.078 0.922 36 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.478 14.938 0.906 16.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.068 4.068 3 C -0.202 4.202 4 N -0.203 5.203 5 C -0.131 4.131 6 C -0.055 4.055 7 N -0.292 5.292 8 C 0.073 3.927 9 H 0.052 0.948 10 C -0.241 4.241 11 C -0.536 4.536 12 H 0.099 0.901 13 C -0.134 4.134 14 N -0.540 5.540 15 Si 0.717 3.283 16 H -0.208 1.208 17 H -0.195 1.195 18 H -0.224 1.224 19 C -0.114 4.114 20 H 0.078 0.922 21 H 0.073 0.927 22 H 0.073 0.927 23 H 0.067 0.933 24 H 0.079 0.921 25 H 0.073 0.927 26 H 0.075 0.925 27 H 0.098 0.902 28 H 0.091 0.909 29 H 0.090 0.910 30 H 0.151 0.849 31 H 0.073 0.927 32 H 0.045 0.955 33 H 0.063 0.937 34 H 0.073 0.927 35 H 0.096 0.904 36 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -7.284 14.748 1.025 16.481 hybrid contribution 0.978 -0.210 1.020 1.429 sum -6.305 14.538 2.046 15.978 Atomic orbital electron populations 1.21714 0.94382 1.01957 1.01516 1.22164 0.96281 0.95503 0.92816 1.21837 1.01003 0.95564 1.01821 1.68516 1.09949 1.07512 1.34315 1.24163 0.90468 0.97371 1.01102 1.23385 0.94229 0.90534 0.97324 1.60763 1.14983 1.07786 1.45620 1.19705 0.93454 0.89308 0.90275 0.94765 1.22865 1.01838 0.99144 1.00240 1.20975 1.43805 0.93007 0.95858 0.90122 1.24946 0.94957 0.95940 0.97595 1.69887 1.46296 1.02568 1.35297 0.86887 0.78426 0.76287 0.86674 1.20813 1.19462 1.22440 1.24095 0.97970 0.88158 1.01161 0.92165 0.92693 0.92656 0.93344 0.92114 0.92693 0.92503 0.90187 0.90855 0.90975 0.84859 0.92736 0.95479 0.93690 0.92708 0.90377 0.90168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 9.37 37.16 0.35 -1.16 16 2 C 0.04 0.51 2.33 -67.71 -0.16 0.35 16 3 C -0.14 -1.50 9.09 37.16 0.34 -1.17 16 4 N -0.48 -6.75 5.98 -230.41 -1.38 -8.13 16 5 C 0.00 -0.02 6.30 -2.77 -0.02 -0.04 16 6 C 0.06 0.96 4.02 -69.38 -0.28 0.68 16 7 N -0.66 -13.16 6.30 -102.16 -0.64 -13.80 16 8 C 0.18 4.25 2.02 -68.86 -0.14 4.11 16 9 H 0.03 0.85 6.90 -51.93 -0.36 0.49 16 10 C -0.18 -3.90 8.63 37.16 0.32 -3.58 16 11 C -0.50 -14.03 9.42 -34.44 -0.32 -14.35 16 12 H 0.08 2.50 8.06 -52.49 -0.42 2.08 16 13 C 0.07 1.93 5.45 -17.82 -0.10 1.83 16 14 N -0.90 -27.74 13.96 55.43 0.77 -26.96 16 15 Si 0.89 22.05 24.37 -169.99 -4.14 17.90 16 16 H -0.28 -6.81 6.87 56.52 0.39 -6.42 16 17 H -0.27 -6.45 6.53 56.52 0.37 -6.08 16 18 H -0.30 -7.41 7.11 56.52 0.40 -7.01 16 19 C 0.02 0.25 7.41 -2.74 -0.02 0.23 16 20 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 21 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 22 H 0.05 0.63 7.91 -51.93 -0.41 0.22 16 23 H 0.05 0.63 7.62 -51.93 -0.40 0.23 16 24 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.05 0.57 7.02 -51.93 -0.36 0.21 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.07 1.00 7.66 -51.93 -0.40 0.60 16 29 H 0.07 1.27 7.50 -51.93 -0.39 0.88 16 30 H 0.33 6.20 8.29 -39.29 -0.33 5.87 16 31 H 0.05 1.12 8.13 -51.93 -0.42 0.70 16 32 H 0.03 0.50 7.75 -51.93 -0.40 0.10 16 33 H 0.04 1.02 3.27 -51.93 -0.17 0.85 16 34 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 35 H 0.08 1.30 7.62 -51.93 -0.40 0.90 16 36 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 LS Contribution 280.04 15.07 4.22 4.22 Total: -1.00 -29.55 280.04 -7.37 -36.92 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: -6.17 Total: 2.94 kcal Atomic # 6 Polarization: -13.07 SS G_CDS: -0.03 Total: -13.10 kcal Atomic # 7 Polarization: -47.64 SS G_CDS: -1.25 Total: -48.89 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -4.14 Total: 17.90 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -29.55 -7.37 -36.92 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382063775.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.730 kcal (2) G-P(sol) polarization free energy of solvation -29.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.921 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds