Wall clock time and date at job start Mon Mar 30 2020 03:17:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.46807 * 2 1 4 4 N 1.46900 * 109.46862 * 119.99889 * 2 1 3 5 5 C 1.47963 * 110.99901 * 180.02562 * 4 2 1 6 6 C 1.53926 * 86.18081 * 222.41983 * 5 4 2 7 7 N 1.46901 * 113.73399 * 138.07782 * 6 5 4 8 8 C 1.46906 * 111.00063 * 156.89624 * 7 6 5 9 9 H 1.09005 * 109.47029 * 325.00534 * 8 7 6 10 10 C 1.52999 * 109.47081 * 84.99975 * 8 7 6 11 11 C 1.50697 * 109.47444 * 204.99796 * 8 7 6 12 12 H 1.08002 * 119.99537 * 354.36649 * 11 8 7 13 13 C 1.37874 * 120.00178 * 174.36193 * 11 8 7 14 14 N 1.31506 * 120.00215 * 156.76310 * 13 11 8 15 15 Si 1.86799 * 119.99813 * 336.48628 * 13 11 8 16 16 H 1.48504 * 109.47142 * 180.27491 * 15 13 11 17 17 H 1.48496 * 109.47505 * 300.27310 * 15 13 11 18 18 H 1.48503 * 109.47467 * 60.27510 * 15 13 11 19 19 C 1.48189 * 111.06914 * 80.57159 * 4 2 1 20 20 H 1.08997 * 109.47396 * 60.00174 * 1 2 3 21 21 H 1.09007 * 109.47051 * 179.97438 * 1 2 3 22 22 H 1.08995 * 109.47442 * 299.99835 * 1 2 3 23 23 H 1.08995 * 109.47442 * 240.00164 * 2 1 3 24 24 H 1.09000 * 109.47222 * 179.97438 * 3 2 1 25 25 H 1.08997 * 109.47718 * 299.99861 * 3 2 1 26 26 H 1.09003 * 109.47154 * 60.00182 * 3 2 1 27 27 H 1.08998 * 113.76170 * 108.09387 * 5 4 2 28 28 H 1.09005 * 113.85593 * 336.74932 * 5 4 2 29 29 H 1.09002 * 113.73300 * 269.25395 * 6 5 4 30 30 H 1.00903 * 111.00400 * 280.84948 * 7 6 5 31 31 H 1.09001 * 109.47458 * 293.03954 * 10 8 7 32 32 H 1.09003 * 109.46974 * 53.03431 * 10 8 7 33 33 H 1.09000 * 109.47648 * 173.03727 * 10 8 7 34 34 H 0.97007 * 120.00027 * 354.64954 * 14 13 11 35 35 H 1.08994 * 113.75829 * 23.23615 * 19 4 2 36 36 H 1.08996 * 113.82113 * 251.80625 * 19 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 3.4987 -0.7117 1.2340 6 6 3.3664 -2.1744 1.6949 7 7 4.3287 -3.0841 1.0591 8 6 4.5427 -4.2826 1.8812 9 1 4.4936 -4.0130 2.9362 10 6 3.4587 -5.3160 1.5680 11 6 5.8974 -4.8670 1.5744 12 1 6.4976 -4.4505 0.7790 13 6 6.3706 -5.9334 2.3091 14 7 7.2863 -6.7281 1.7999 15 14 5.7166 -6.2448 4.0310 16 1 6.3860 -7.4391 4.6062 17 1 5.9922 -5.0628 4.8865 18 1 4.2517 -6.4803 3.9691 19 6 1.9836 -2.1628 1.0178 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8899 23 1 1.8934 -0.5138 -0.8899 24 1 3.1299 1.4426 0.0005 25 1 1.6767 1.9564 -0.8899 26 1 1.6766 1.9563 0.8900 27 1 3.9291 -0.0512 1.9867 28 1 3.9641 -0.6003 0.2546 29 1 3.3234 -2.2909 2.7779 30 1 4.0303 -3.3329 0.1279 31 1 2.4918 -4.9416 1.9042 32 1 3.4257 -5.4935 0.4930 33 1 3.6863 -6.2490 2.0835 34 1 7.5726 -6.6117 0.8804 35 1 2.0030 -2.4769 -0.0257 36 1 1.2060 -2.6591 1.5983 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000382063797.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:54 Heat of formation + Delta-G solvation = 27.488657 kcal Electronic energy + Delta-G solvation = -14562.374237 eV Core-core repulsion = 12275.253309 eV Total energy + Delta-G solvation = -2287.120928 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.95859 -35.84142 -33.71223 -31.93485 -28.73238 -27.73298 -25.35875 -25.31594 -24.46393 -20.49379 -20.03336 -19.47989 -17.36988 -16.13345 -15.50094 -14.67353 -14.40436 -13.81340 -13.63544 -13.24679 -12.70747 -12.55647 -12.23116 -12.20454 -11.95975 -11.79405 -11.62684 -11.38023 -11.15044 -10.89893 -10.58120 -10.47202 -10.12980 -10.06082 -9.69627 -9.00909 -8.69436 -8.14625 -7.47388 -6.40765 -3.97654 3.40728 3.46682 3.63092 4.02478 4.53818 4.74524 4.84959 4.95783 5.00598 5.24176 5.26866 5.43018 5.50745 5.55039 5.61544 5.74063 5.77800 5.80296 6.01636 6.05078 6.05926 6.13085 6.27662 6.31352 6.49681 6.50832 6.63911 6.85869 7.19205 7.23577 7.81861 8.26341 8.35631 8.48465 9.04938 9.66687 10.95771 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.059765 B = 0.006549 C = 0.006412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 468.386922 B = 4274.230030 C = 4365.644185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.042 3.958 3 C -0.145 4.145 4 N -0.477 5.477 5 C 0.011 3.989 6 C 0.067 3.933 7 N -0.663 5.663 8 C 0.190 3.810 9 H 0.027 0.973 10 C -0.175 4.175 11 C -0.590 4.590 12 H 0.062 0.938 13 C 0.034 3.966 14 N -0.902 5.902 15 Si 1.035 2.965 16 H -0.285 1.285 17 H -0.283 1.283 18 H -0.280 1.280 19 C -0.027 4.027 20 H 0.054 0.946 21 H 0.052 0.948 22 H 0.061 0.939 23 H 0.044 0.956 24 H 0.056 0.944 25 H 0.056 0.944 26 H 0.061 0.939 27 H 0.084 0.916 28 H 0.070 0.930 29 H 0.098 0.902 30 H 0.330 0.670 31 H 0.020 0.980 32 H 0.042 0.958 33 H 0.055 0.945 34 H 0.269 0.731 35 H 0.066 0.934 36 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.223 11.506 -2.382 16.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.067 4.067 3 C -0.203 4.203 4 N -0.201 5.201 5 C -0.119 4.119 6 C -0.045 4.045 7 N -0.291 5.291 8 C 0.081 3.919 9 H 0.044 0.956 10 C -0.234 4.234 11 C -0.628 4.628 12 H 0.081 0.919 13 C -0.172 4.172 14 N -0.536 5.536 15 Si 0.864 3.136 16 H -0.211 1.211 17 H -0.210 1.210 18 H -0.206 1.206 19 C -0.158 4.158 20 H 0.073 0.927 21 H 0.071 0.929 22 H 0.080 0.920 23 H 0.062 0.938 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.080 0.920 27 H 0.103 0.897 28 H 0.088 0.912 29 H 0.116 0.884 30 H 0.149 0.851 31 H 0.039 0.961 32 H 0.061 0.939 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -11.826 11.167 -0.291 16.268 hybrid contribution -0.712 0.195 -2.333 2.447 sum -12.538 11.361 -2.624 17.122 Atomic orbital electron populations 1.21719 0.94470 1.01737 1.01628 1.22152 0.96163 0.95751 0.92664 1.21835 1.01247 0.95343 1.01850 1.68546 1.11170 1.06334 1.34066 1.24065 0.88608 0.97868 1.01315 1.23488 0.88500 0.93222 0.99339 1.60620 1.44979 1.18360 1.05120 1.19565 0.95125 0.84788 0.92452 0.95571 1.22840 0.97887 1.02028 1.00643 1.21909 1.02187 1.17066 1.21668 0.91937 1.25632 0.95607 0.91991 1.03932 1.70841 1.31245 1.34690 1.16813 0.84164 0.76182 0.76511 0.76776 1.21111 1.20970 1.20640 1.24818 1.00725 0.90079 1.00193 0.92705 0.92927 0.92027 0.93773 0.92458 0.92532 0.91997 0.89746 0.91171 0.88390 0.85144 0.96077 0.93910 0.92584 0.92159 0.91599 0.90058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 9.37 37.16 0.35 -1.11 16 2 C 0.04 0.50 2.33 -67.71 -0.16 0.35 16 3 C -0.15 -1.54 9.09 37.16 0.34 -1.20 16 4 N -0.48 -6.67 5.98 -230.21 -1.38 -8.05 16 5 C 0.01 0.16 6.52 -2.76 -0.02 0.14 16 6 C 0.07 1.14 4.23 -69.39 -0.29 0.84 16 7 N -0.66 -13.49 6.35 -102.16 -0.65 -14.14 16 8 C 0.19 4.46 2.16 -68.86 -0.15 4.31 16 9 H 0.03 0.64 6.04 -51.93 -0.31 0.32 16 10 C -0.17 -3.77 8.94 37.16 0.33 -3.44 16 11 C -0.59 -16.63 9.05 -34.44 -0.31 -16.94 16 12 H 0.06 1.93 8.06 -52.49 -0.42 1.51 16 13 C 0.03 0.98 5.19 -17.82 -0.09 0.88 16 14 N -0.90 -27.68 13.69 55.43 0.76 -26.92 16 15 Si 1.04 25.16 26.45 -169.99 -4.50 20.66 16 16 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 17 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 18 H -0.28 -6.32 6.18 56.52 0.35 -5.97 16 19 C -0.03 -0.40 7.25 -2.61 -0.02 -0.42 16 20 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 21 H 0.05 0.57 7.92 -51.92 -0.41 0.16 16 22 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 23 H 0.04 0.55 7.63 -51.93 -0.40 0.16 16 24 H 0.06 0.62 7.02 -51.93 -0.36 0.26 16 25 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 27 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 28 H 0.07 1.05 7.66 -51.93 -0.40 0.65 16 29 H 0.10 1.75 7.50 -51.93 -0.39 1.36 16 30 H 0.33 6.42 7.86 -39.29 -0.31 6.11 16 31 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.04 0.89 8.00 -51.93 -0.42 0.48 16 33 H 0.06 1.28 5.52 -51.93 -0.29 1.00 16 34 H 0.27 8.21 8.73 -40.82 -0.36 7.86 16 35 H 0.07 0.94 7.31 -51.93 -0.38 0.56 16 36 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 283.25 15.07 4.27 4.27 Total: -1.00 -29.21 283.25 -7.77 -36.97 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: -6.25 Total: 3.78 kcal Atomic # 6 Polarization: -16.55 SS G_CDS: -0.02 Total: -16.58 kcal Atomic # 7 Polarization: -47.84 SS G_CDS: -1.27 Total: -49.10 kcal Atomic # 14 Polarization: 25.16 SS G_CDS: -4.50 Total: 20.66 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -29.21 -7.77 -36.97 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382063797.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.461 kcal (2) G-P(sol) polarization free energy of solvation -29.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.973 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds