Wall clock time and date at job start Mon Mar 30 2020 03:17:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.46807 * 2 1 4 4 N 1.46900 * 109.46862 * 119.99889 * 2 1 3 5 5 C 1.47963 * 110.99901 * 180.02562 * 4 2 1 6 6 C 1.53926 * 86.18081 * 222.41983 * 5 4 2 7 7 N 1.46901 * 113.73399 * 138.07782 * 6 5 4 8 8 C 1.46906 * 111.00063 * 156.89624 * 7 6 5 9 9 H 1.09005 * 109.47029 * 325.00534 * 8 7 6 10 10 C 1.52999 * 109.47081 * 84.99975 * 8 7 6 11 11 C 1.50697 * 109.47444 * 204.99796 * 8 7 6 12 12 H 1.08002 * 119.99537 * 354.36649 * 11 8 7 13 13 C 1.37874 * 120.00178 * 174.36193 * 11 8 7 14 14 N 1.31506 * 120.00215 * 156.76310 * 13 11 8 15 15 Si 1.86799 * 119.99813 * 336.48628 * 13 11 8 16 16 H 1.48504 * 109.47142 * 180.27491 * 15 13 11 17 17 H 1.48496 * 109.47505 * 300.27310 * 15 13 11 18 18 H 1.48503 * 109.47467 * 60.27510 * 15 13 11 19 19 C 1.48189 * 111.06914 * 80.57159 * 4 2 1 20 20 H 1.08997 * 109.47396 * 60.00174 * 1 2 3 21 21 H 1.09007 * 109.47051 * 179.97438 * 1 2 3 22 22 H 1.08995 * 109.47442 * 299.99835 * 1 2 3 23 23 H 1.08995 * 109.47442 * 240.00164 * 2 1 3 24 24 H 1.09000 * 109.47222 * 179.97438 * 3 2 1 25 25 H 1.08997 * 109.47718 * 299.99861 * 3 2 1 26 26 H 1.09003 * 109.47154 * 60.00182 * 3 2 1 27 27 H 1.08998 * 113.76170 * 108.09387 * 5 4 2 28 28 H 1.09005 * 113.85593 * 336.74932 * 5 4 2 29 29 H 1.09002 * 113.73300 * 269.25395 * 6 5 4 30 30 H 1.00903 * 111.00400 * 280.84948 * 7 6 5 31 31 H 1.09001 * 109.47458 * 293.03954 * 10 8 7 32 32 H 1.09003 * 109.46974 * 53.03431 * 10 8 7 33 33 H 1.09000 * 109.47648 * 173.03727 * 10 8 7 34 34 H 0.97007 * 120.00027 * 354.64954 * 14 13 11 35 35 H 1.08994 * 113.75829 * 23.23615 * 19 4 2 36 36 H 1.08996 * 113.82113 * 251.80625 * 19 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 3.4987 -0.7117 1.2340 6 6 3.3664 -2.1744 1.6949 7 7 4.3287 -3.0841 1.0591 8 6 4.5427 -4.2826 1.8812 9 1 4.4936 -4.0130 2.9362 10 6 3.4587 -5.3160 1.5680 11 6 5.8974 -4.8670 1.5744 12 1 6.4976 -4.4505 0.7790 13 6 6.3706 -5.9334 2.3091 14 7 7.2863 -6.7281 1.7999 15 14 5.7166 -6.2448 4.0310 16 1 6.3860 -7.4391 4.6062 17 1 5.9922 -5.0628 4.8865 18 1 4.2517 -6.4803 3.9691 19 6 1.9836 -2.1628 1.0178 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8899 23 1 1.8934 -0.5138 -0.8899 24 1 3.1299 1.4426 0.0005 25 1 1.6767 1.9564 -0.8899 26 1 1.6766 1.9563 0.8900 27 1 3.9291 -0.0512 1.9867 28 1 3.9641 -0.6003 0.2546 29 1 3.3234 -2.2909 2.7779 30 1 4.0303 -3.3329 0.1279 31 1 2.4918 -4.9416 1.9042 32 1 3.4257 -5.4935 0.4930 33 1 3.6863 -6.2490 2.0835 34 1 7.5726 -6.6117 0.8804 35 1 2.0030 -2.4769 -0.0257 36 1 1.2060 -2.6591 1.5983 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000382063797.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:54 Heat of formation + Delta-G solvation = 5.141735 kcal Electronic energy + Delta-G solvation = -14563.343273 eV Core-core repulsion = 12275.253309 eV Total energy + Delta-G solvation = -2288.089963 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.14935 -37.44683 -35.10777 -33.80618 -30.36021 -28.64007 -26.93068 -26.46366 -26.16080 -22.08379 -21.39621 -20.78570 -19.43690 -17.29961 -16.87003 -15.96770 -15.72418 -15.35578 -15.12718 -14.81323 -14.23230 -13.84600 -13.76198 -13.45586 -13.13989 -13.08286 -12.92855 -12.84657 -12.40272 -12.31554 -12.00562 -11.86885 -11.69065 -11.63407 -11.30410 -11.09187 -10.34225 -9.81641 -9.10719 -8.65608 -6.26848 1.47354 1.54398 1.73410 2.51980 2.89775 3.04957 3.45006 3.69108 3.93026 4.05281 4.10070 4.25146 4.43081 4.46827 4.51226 4.64775 4.67577 4.77543 4.78749 4.88457 4.90779 4.93117 5.00485 5.07948 5.10789 5.15487 5.34278 5.45720 5.49264 5.89995 6.11731 6.14078 6.44271 6.69047 6.78724 7.47372 8.65855 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.059765 B = 0.006549 C = 0.006412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 468.386922 B = 4274.230030 C = 4365.644185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.037 3.963 3 C -0.142 4.142 4 N -0.477 5.477 5 C 0.018 3.982 6 C 0.057 3.943 7 N -0.675 5.675 8 C 0.192 3.808 9 H 0.027 0.973 10 C -0.166 4.166 11 C -0.595 4.595 12 H 0.019 0.981 13 C -0.016 4.016 14 N -0.936 5.936 15 Si 1.078 2.922 16 H -0.289 1.289 17 H -0.269 1.269 18 H -0.248 1.248 19 C -0.016 4.016 20 H 0.072 0.928 21 H 0.048 0.952 22 H 0.060 0.940 23 H 0.040 0.960 24 H 0.050 0.950 25 H 0.074 0.926 26 H 0.061 0.939 27 H 0.088 0.912 28 H 0.068 0.932 29 H 0.091 0.909 30 H 0.334 0.666 31 H 0.053 0.947 32 H 0.041 0.959 33 H 0.042 0.958 34 H 0.253 0.747 35 H 0.070 0.930 36 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.591 12.623 -1.713 19.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.072 4.072 3 C -0.199 4.199 4 N -0.201 5.201 5 C -0.111 4.111 6 C -0.054 4.054 7 N -0.304 5.304 8 C 0.083 3.917 9 H 0.045 0.955 10 C -0.226 4.226 11 C -0.633 4.633 12 H 0.038 0.962 13 C -0.215 4.215 14 N -0.571 5.571 15 Si 0.899 3.101 16 H -0.215 1.215 17 H -0.194 1.194 18 H -0.172 1.172 19 C -0.146 4.146 20 H 0.091 0.909 21 H 0.067 0.933 22 H 0.079 0.921 23 H 0.058 0.942 24 H 0.069 0.931 25 H 0.093 0.907 26 H 0.080 0.920 27 H 0.106 0.894 28 H 0.087 0.913 29 H 0.109 0.891 30 H 0.152 0.848 31 H 0.072 0.928 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.088 0.912 36 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -14.220 12.317 0.358 18.816 hybrid contribution 0.052 -0.058 -2.639 2.640 sum -14.168 12.259 -2.281 18.874 Atomic orbital electron populations 1.21692 0.93159 1.01768 1.02493 1.22272 0.97217 0.96227 0.91494 1.21814 1.00816 0.94552 1.02745 1.68563 1.10213 1.06010 1.35334 1.23976 0.89559 0.96355 1.01223 1.23567 0.89405 0.93502 0.98956 1.60463 1.47239 1.17509 1.05158 1.19370 0.93094 0.86391 0.92862 0.95501 1.22668 0.98641 1.00627 1.00619 1.22130 1.04155 1.16923 1.20070 0.96235 1.27041 0.95250 0.91853 1.07364 1.70967 1.33440 1.36543 1.16160 0.83626 0.77539 0.76750 0.72165 1.21515 1.19400 1.17197 1.24700 0.99056 0.90711 1.00183 0.90915 0.93305 0.92126 0.94160 0.93114 0.90749 0.92020 0.89381 0.91343 0.89069 0.84771 0.92808 0.93944 0.93942 0.93835 0.91170 0.89321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.43 9.37 71.98 0.67 -1.75 16 2 C 0.04 0.79 2.33 44.92 0.10 0.89 16 3 C -0.14 -2.64 9.09 71.98 0.65 -1.99 16 4 N -0.48 -12.19 5.98 -882.25 -5.28 -17.47 16 5 C 0.02 0.52 6.52 86.41 0.56 1.08 16 6 C 0.06 1.84 4.23 46.49 0.20 2.04 16 7 N -0.67 -26.90 6.35 -477.14 -3.03 -29.93 16 8 C 0.19 8.86 2.16 44.17 0.10 8.95 16 9 H 0.03 1.25 6.04 -2.38 -0.01 1.24 16 10 C -0.17 -6.82 8.94 71.98 0.64 -6.18 16 11 C -0.59 -34.07 9.05 25.60 0.23 -33.83 16 12 H 0.02 1.25 8.06 -2.91 -0.02 1.22 16 13 C -0.02 -0.95 5.19 84.66 0.44 -0.51 16 14 N -0.94 -58.96 13.69 21.44 0.29 -58.67 16 15 Si 1.08 49.93 26.45 68.60 1.81 51.75 16 16 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 17 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 18 H -0.25 -10.15 6.18 99.48 0.62 -9.54 16 19 C -0.02 -0.42 7.25 86.38 0.63 0.20 16 20 H 0.07 1.06 8.14 -2.39 -0.02 1.05 16 21 H 0.05 0.92 7.92 -2.38 -0.02 0.90 16 22 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 23 H 0.04 0.91 7.63 -2.39 -0.02 0.89 16 24 H 0.05 1.01 7.02 -2.39 -0.02 0.99 16 25 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 26 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 28 H 0.07 1.95 7.66 -2.38 -0.02 1.93 16 29 H 0.09 3.08 7.50 -2.39 -0.02 3.06 16 30 H 0.33 12.71 7.86 -89.69 -0.71 12.01 16 31 H 0.05 1.84 8.14 -2.39 -0.02 1.83 16 32 H 0.04 1.71 8.00 -2.39 -0.02 1.69 16 33 H 0.04 1.84 5.52 -2.39 -0.01 1.83 16 34 H 0.25 16.19 8.73 -92.70 -0.81 15.38 16 35 H 0.07 1.83 7.31 -2.39 -0.02 1.81 16 36 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 Total: -1.00 -63.24 283.25 -1.77 -65.01 By element: Atomic # 1 Polarization: 20.21 SS G_CDS: 0.20 Total: 20.41 kcal Atomic # 6 Polarization: -35.33 SS G_CDS: 4.23 Total: -31.10 kcal Atomic # 7 Polarization: -98.05 SS G_CDS: -8.02 Total: -106.07 kcal Atomic # 14 Polarization: 49.93 SS G_CDS: 1.81 Total: 51.75 kcal Total: -63.24 -1.77 -65.01 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382063797.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.156 kcal (2) G-P(sol) polarization free energy of solvation -63.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.014 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds