Wall clock time and date at job start Mon Mar 30 2020 03:27:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46898 * 109.47049 * 2 1 4 4 C 1.47480 * 111.00405 * 265.97434 * 3 2 1 5 5 C 1.53515 * 87.93275 * 221.29694 * 4 3 2 6 6 N 1.46905 * 114.17241 * 139.66772 * 5 4 3 7 7 C 1.46897 * 110.99773 * 111.15700 * 6 5 4 8 8 C 1.53001 * 109.46716 * 180.02562 * 7 6 5 9 9 C 1.53000 * 109.47131 * 180.02562 * 8 7 6 10 10 C 1.50693 * 109.47387 * 180.02562 * 9 8 7 11 11 H 1.08000 * 119.99977 * 359.97438 * 10 9 8 12 12 C 1.37884 * 120.00082 * 179.97438 * 10 9 8 13 13 N 1.31507 * 119.99928 * 359.97438 * 12 10 9 14 14 Si 1.86797 * 119.99805 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.47167 * 60.00398 * 14 12 10 16 16 H 1.48508 * 109.47027 * 179.97438 * 14 12 10 17 17 H 1.48496 * 109.47653 * 300.00254 * 14 12 10 18 18 C 1.47486 * 110.99952 * 170.00069 * 3 2 1 19 19 H 1.09005 * 109.47224 * 59.99614 * 1 2 3 20 20 H 1.09001 * 109.46851 * 179.97438 * 1 2 3 21 21 H 1.09001 * 109.47065 * 299.99843 * 1 2 3 22 22 H 1.09001 * 109.47065 * 240.00156 * 2 1 3 23 23 H 1.09005 * 109.47224 * 120.00386 * 2 1 3 24 24 H 1.09005 * 113.47310 * 336.06042 * 4 3 2 25 25 H 1.08990 * 113.48150 * 106.52863 * 4 3 2 26 26 H 1.08994 * 114.17159 * 272.37520 * 5 4 3 27 27 H 1.00906 * 110.99352 * 347.20565 * 6 5 4 28 28 H 1.08994 * 109.47274 * 300.00304 * 7 6 5 29 29 H 1.08995 * 109.46769 * 60.00606 * 7 6 5 30 30 H 1.08994 * 109.47380 * 300.00095 * 8 7 6 31 31 H 1.09003 * 109.47174 * 60.00362 * 8 7 6 32 32 H 1.09003 * 109.46673 * 300.00314 * 9 8 7 33 33 H 1.09003 * 109.46920 * 60.00054 * 9 8 7 34 34 H 0.97004 * 120.00133 * 179.97438 * 13 12 10 35 35 H 1.09005 * 113.47586 * 253.47470 * 18 3 2 36 36 H 1.08996 * 113.47223 * 23.93957 * 18 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 2.2870 1.8511 -1.3734 5 6 3.5605 2.5211 -0.8386 6 7 4.7238 2.3976 -1.7272 7 6 5.0858 3.6989 -2.3046 8 6 6.2981 3.5301 -3.2225 9 6 6.6756 4.8856 -3.8234 10 6 7.8693 4.7192 -4.7280 11 1 8.3145 3.7442 -4.8607 12 6 8.3931 5.8117 -5.3862 13 7 7.8506 6.9988 -5.2249 14 14 9.8732 5.6055 -6.5069 15 1 9.5393 4.6554 -7.5983 16 1 10.2388 6.9210 -7.0912 17 1 11.0180 5.0762 -5.7229 18 6 3.4743 1.4313 0.2391 19 1 -0.3634 0.5139 -0.8900 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 1.8934 -0.5138 -0.8900 23 1 1.8934 -0.5139 0.8900 24 1 2.4846 1.0415 -2.0760 25 1 1.5462 2.5598 -1.7434 26 1 3.4085 3.5330 -0.4633 27 1 4.5549 1.7152 -2.4511 28 1 4.2457 4.0872 -2.8804 29 1 5.3305 4.3963 -1.5035 30 1 7.1383 3.1416 -2.6470 31 1 6.0530 2.8327 -4.0236 32 1 5.8355 5.2745 -4.3988 33 1 6.9209 5.5826 -3.0220 34 1 8.2194 7.7675 -5.6877 35 1 3.7395 1.7842 1.2357 36 1 3.9886 0.5097 -0.0332 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000382273207.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:39 Heat of formation + Delta-G solvation = 17.999331 kcal Electronic energy + Delta-G solvation = -13706.109677 eV Core-core repulsion = 11418.577261 eV Total energy + Delta-G solvation = -2287.532416 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.28970 -35.80383 -33.53384 -32.32401 -30.52959 -26.96994 -26.00794 -25.21490 -22.56645 -21.49896 -20.56493 -19.54045 -16.36187 -16.19476 -15.88944 -15.34825 -14.67292 -14.44521 -14.04448 -13.39543 -13.22035 -12.71626 -12.46568 -12.23511 -12.00063 -11.95526 -11.42676 -11.18820 -10.89314 -10.77398 -10.71402 -10.56548 -10.43482 -9.68961 -9.36517 -9.12939 -9.00517 -8.32632 -8.16918 -5.97873 -4.00074 3.34921 3.39003 3.41736 3.80274 4.32226 4.46663 4.52877 4.71351 4.92608 4.98205 5.16429 5.28181 5.34859 5.37791 5.51638 5.56233 5.69593 5.71292 5.78266 5.87535 5.92954 5.99594 6.18183 6.31975 6.72320 6.76920 6.90091 7.14134 7.31496 7.57373 7.69993 7.85209 8.02479 8.45661 9.06959 9.63760 11.13566 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.092896 B = 0.004062 C = 0.004032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 301.340570 B = 6891.372652 C = 6942.848314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.015 3.985 3 N -0.474 5.474 4 C -0.031 4.031 5 C 0.065 3.935 6 N -0.678 5.678 7 C 0.059 3.941 8 C -0.108 4.108 9 C 0.022 3.978 10 C -0.520 4.520 11 H 0.054 0.946 12 C 0.056 3.944 13 N -0.897 5.897 14 Si 0.893 3.107 15 H -0.277 1.277 16 H -0.287 1.287 17 H -0.277 1.277 18 C 0.004 3.996 19 H 0.053 0.947 20 H 0.055 0.945 21 H 0.061 0.939 22 H 0.043 0.957 23 H 0.071 0.929 24 H 0.070 0.930 25 H 0.082 0.918 26 H 0.107 0.893 27 H 0.339 0.661 28 H 0.027 0.973 29 H 0.069 0.931 30 H 0.056 0.944 31 H 0.044 0.956 32 H 0.014 0.986 33 H 0.016 0.984 34 H 0.261 0.739 35 H 0.085 0.915 36 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.825 -11.885 8.959 19.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.114 4.114 3 N -0.197 5.197 4 C -0.162 4.162 5 C -0.047 4.047 6 N -0.308 5.308 7 C -0.070 4.070 8 C -0.146 4.146 9 C -0.015 4.015 10 C -0.558 4.558 11 H 0.073 0.927 12 C -0.145 4.145 13 N -0.536 5.536 14 Si 0.720 3.280 15 H -0.203 1.203 16 H -0.213 1.213 17 H -0.202 1.202 18 C -0.125 4.125 19 H 0.072 0.928 20 H 0.074 0.926 21 H 0.080 0.920 22 H 0.062 0.938 23 H 0.089 0.911 24 H 0.088 0.912 25 H 0.100 0.900 26 H 0.125 0.875 27 H 0.158 0.842 28 H 0.045 0.955 29 H 0.087 0.913 30 H 0.075 0.925 31 H 0.063 0.937 32 H 0.032 0.968 33 H 0.035 0.965 34 H 0.070 0.930 35 H 0.103 0.897 36 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -11.826 -11.319 9.857 19.108 hybrid contribution 0.541 -0.507 -1.817 1.963 sum -11.285 -11.827 8.040 18.217 Atomic orbital electron populations 1.21659 0.94694 1.01165 1.02464 1.22638 0.96967 0.90634 1.01127 1.68845 1.14817 1.19297 1.16707 1.24713 0.99382 1.00087 0.92009 1.23154 0.87782 0.99119 0.94600 1.60479 1.35667 1.10705 1.23934 1.22184 0.97931 0.89211 0.97642 1.21638 0.95348 1.00919 0.96701 1.19059 0.96237 0.90753 0.95492 1.21225 1.13753 0.94205 1.26664 0.92734 1.25031 0.97235 0.95324 0.96927 1.69954 1.41176 0.99144 1.43335 0.86652 0.83173 0.77156 0.80975 1.20283 1.21310 1.20213 1.24015 0.88557 0.99261 1.00704 0.92808 0.92582 0.92018 0.93828 0.91070 0.91213 0.89981 0.87481 0.84241 0.95508 0.91277 0.92549 0.93702 0.96792 0.96537 0.92970 0.89680 0.90998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.20 10.24 37.16 0.38 -0.82 16 2 C 0.02 0.14 5.54 -3.82 -0.02 0.12 16 3 N -0.47 -5.31 6.33 -244.61 -1.55 -6.86 16 4 C -0.03 -0.35 7.33 -7.54 -0.06 -0.40 16 5 C 0.07 0.81 4.53 -67.49 -0.31 0.51 16 6 N -0.68 -9.74 6.65 -106.44 -0.71 -10.45 16 7 C 0.06 1.01 5.53 -3.83 -0.02 0.99 16 8 C -0.11 -2.24 5.41 -26.73 -0.14 -2.39 16 9 C 0.02 0.58 4.97 -27.89 -0.14 0.44 16 10 C -0.52 -14.95 9.11 -34.44 -0.31 -15.26 16 11 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 12 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 13 N -0.90 -27.25 13.29 55.43 0.74 -26.52 16 14 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 15 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 16 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 17 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 18 C 0.00 0.05 7.49 -7.53 -0.06 -0.01 16 19 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 20 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 21 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 22 H 0.04 0.40 7.30 -51.93 -0.38 0.02 16 23 H 0.07 0.63 8.08 -51.93 -0.42 0.21 16 24 H 0.07 0.74 7.12 -51.93 -0.37 0.37 16 25 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.11 1.39 7.88 -51.93 -0.41 0.98 16 27 H 0.34 4.54 8.20 -39.29 -0.32 4.22 16 28 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 30 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.04 0.91 8.14 -51.93 -0.42 0.48 16 32 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.26 7.47 8.31 -40.82 -0.34 7.14 16 35 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 36 H 0.07 0.79 7.91 -51.93 -0.41 0.38 16 LS Contribution 294.84 15.07 4.44 4.44 Total: -1.00 -29.87 294.84 -9.37 -39.25 By element: Atomic # 1 Polarization: 5.09 SS G_CDS: -6.50 Total: -1.41 kcal Atomic # 6 Polarization: -14.52 SS G_CDS: -0.77 Total: -15.30 kcal Atomic # 7 Polarization: -42.30 SS G_CDS: -1.52 Total: -43.82 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -29.87 -9.37 -39.25 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382273207.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.245 kcal (2) G-P(sol) polarization free energy of solvation -29.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.245 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds