Wall clock time and date at job start Mon Mar 30 2020 03:27:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46898 * 109.47049 * 2 1 4 4 C 1.47480 * 111.00405 * 265.97434 * 3 2 1 5 5 C 1.53515 * 87.93275 * 221.29694 * 4 3 2 6 6 N 1.46905 * 114.17241 * 139.66772 * 5 4 3 7 7 C 1.46897 * 110.99773 * 111.15700 * 6 5 4 8 8 C 1.53001 * 109.46716 * 180.02562 * 7 6 5 9 9 C 1.53000 * 109.47131 * 180.02562 * 8 7 6 10 10 C 1.50693 * 109.47387 * 180.02562 * 9 8 7 11 11 H 1.08000 * 119.99977 * 359.97438 * 10 9 8 12 12 C 1.37884 * 120.00082 * 179.97438 * 10 9 8 13 13 N 1.31507 * 119.99928 * 359.97438 * 12 10 9 14 14 Si 1.86797 * 119.99805 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.47167 * 60.00398 * 14 12 10 16 16 H 1.48508 * 109.47027 * 179.97438 * 14 12 10 17 17 H 1.48496 * 109.47653 * 300.00254 * 14 12 10 18 18 C 1.47486 * 110.99952 * 170.00069 * 3 2 1 19 19 H 1.09005 * 109.47224 * 59.99614 * 1 2 3 20 20 H 1.09001 * 109.46851 * 179.97438 * 1 2 3 21 21 H 1.09001 * 109.47065 * 299.99843 * 1 2 3 22 22 H 1.09001 * 109.47065 * 240.00156 * 2 1 3 23 23 H 1.09005 * 109.47224 * 120.00386 * 2 1 3 24 24 H 1.09005 * 113.47310 * 336.06042 * 4 3 2 25 25 H 1.08990 * 113.48150 * 106.52863 * 4 3 2 26 26 H 1.08994 * 114.17159 * 272.37520 * 5 4 3 27 27 H 1.00906 * 110.99352 * 347.20565 * 6 5 4 28 28 H 1.08994 * 109.47274 * 300.00304 * 7 6 5 29 29 H 1.08995 * 109.46769 * 60.00606 * 7 6 5 30 30 H 1.08994 * 109.47380 * 300.00095 * 8 7 6 31 31 H 1.09003 * 109.47174 * 60.00362 * 8 7 6 32 32 H 1.09003 * 109.46673 * 300.00314 * 9 8 7 33 33 H 1.09003 * 109.46920 * 60.00054 * 9 8 7 34 34 H 0.97004 * 120.00133 * 179.97438 * 13 12 10 35 35 H 1.09005 * 113.47586 * 253.47470 * 18 3 2 36 36 H 1.08996 * 113.47223 * 23.93957 * 18 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 2.2870 1.8511 -1.3734 5 6 3.5605 2.5211 -0.8386 6 7 4.7238 2.3976 -1.7272 7 6 5.0858 3.6989 -2.3046 8 6 6.2981 3.5301 -3.2225 9 6 6.6756 4.8856 -3.8234 10 6 7.8693 4.7192 -4.7280 11 1 8.3145 3.7442 -4.8607 12 6 8.3931 5.8117 -5.3862 13 7 7.8506 6.9988 -5.2249 14 14 9.8732 5.6055 -6.5069 15 1 9.5393 4.6554 -7.5983 16 1 10.2388 6.9210 -7.0912 17 1 11.0180 5.0762 -5.7229 18 6 3.4743 1.4313 0.2391 19 1 -0.3634 0.5139 -0.8900 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 1.8934 -0.5138 -0.8900 23 1 1.8934 -0.5139 0.8900 24 1 2.4846 1.0415 -2.0760 25 1 1.5462 2.5598 -1.7434 26 1 3.4085 3.5330 -0.4633 27 1 4.5549 1.7152 -2.4511 28 1 4.2457 4.0872 -2.8804 29 1 5.3305 4.3963 -1.5035 30 1 7.1383 3.1416 -2.6470 31 1 6.0530 2.8327 -4.0236 32 1 5.8355 5.2745 -4.3988 33 1 6.9209 5.5826 -3.0220 34 1 8.2194 7.7675 -5.6877 35 1 3.7395 1.7842 1.2357 36 1 3.9886 0.5097 -0.0332 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000382273207.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:39 Heat of formation + Delta-G solvation = -3.715994 kcal Electronic energy + Delta-G solvation = -13707.051325 eV Core-core repulsion = 11418.577261 eV Total energy + Delta-G solvation = -2288.474063 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.20579 -37.22189 -35.29815 -33.63778 -32.05927 -28.47242 -26.93566 -26.55306 -24.24214 -22.38995 -22.11256 -20.73112 -18.48079 -17.17550 -16.91378 -16.56923 -16.35179 -15.81312 -15.27884 -14.45359 -14.41830 -14.21673 -13.74031 -13.52240 -13.29993 -13.18775 -12.79120 -12.63812 -12.47110 -12.37738 -12.01850 -11.75377 -11.59612 -11.47887 -11.35582 -11.04354 -10.54333 -9.96533 -9.33182 -8.19527 -6.30745 1.40626 1.43927 1.51862 2.41629 2.88195 3.13513 3.30970 3.54903 3.90187 4.01237 4.18994 4.27625 4.31761 4.41320 4.47134 4.60970 4.66755 4.72393 4.78468 4.85968 4.91810 4.99881 5.04472 5.14162 5.25303 5.27831 5.40855 5.52656 5.76036 5.86634 6.04789 6.07117 6.27405 6.44438 6.86347 7.38505 8.92249 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.092896 B = 0.004062 C = 0.004032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 301.340570 B = 6891.372652 C = 6942.848314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.013 3.987 3 N -0.484 5.484 4 C -0.024 4.024 5 C 0.058 3.942 6 N -0.676 5.676 7 C 0.073 3.927 8 C -0.093 4.093 9 C 0.025 3.975 10 C -0.545 4.545 11 H 0.060 0.940 12 C -0.002 4.002 13 N -0.934 5.934 14 Si 0.966 3.034 15 H -0.266 1.266 16 H -0.283 1.283 17 H -0.267 1.267 18 C 0.011 3.989 19 H 0.047 0.953 20 H 0.072 0.928 21 H 0.056 0.944 22 H 0.048 0.952 23 H 0.078 0.922 24 H 0.079 0.921 25 H 0.080 0.920 26 H 0.100 0.900 27 H 0.347 0.653 28 H 0.026 0.974 29 H 0.062 0.938 30 H 0.052 0.948 31 H 0.051 0.949 32 H -0.009 1.009 33 H -0.009 1.009 34 H 0.264 0.736 35 H 0.087 0.913 36 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.736 -13.458 8.840 19.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.116 4.116 3 N -0.207 5.207 4 C -0.155 4.155 5 C -0.053 4.053 6 N -0.307 5.307 7 C -0.056 4.056 8 C -0.131 4.131 9 C -0.013 4.013 10 C -0.583 4.583 11 H 0.078 0.922 12 C -0.200 4.200 13 N -0.575 5.575 14 Si 0.790 3.210 15 H -0.191 1.191 16 H -0.208 1.208 17 H -0.192 1.192 18 C -0.118 4.118 19 H 0.066 0.934 20 H 0.091 0.909 21 H 0.075 0.925 22 H 0.067 0.933 23 H 0.096 0.904 24 H 0.097 0.903 25 H 0.099 0.901 26 H 0.118 0.882 27 H 0.166 0.834 28 H 0.044 0.956 29 H 0.080 0.920 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.010 0.990 33 H 0.009 0.991 34 H 0.072 0.928 35 H 0.105 0.895 36 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -11.752 -12.916 9.749 20.000 hybrid contribution 0.465 -0.020 -1.742 1.803 sum -11.287 -12.936 8.007 18.943 Atomic orbital electron populations 1.21641 0.94012 1.02108 1.01915 1.22714 0.97541 0.89630 1.01717 1.68854 1.14637 1.20678 1.16556 1.24652 0.98365 1.00137 0.92321 1.23180 0.87753 0.99413 0.94939 1.60400 1.37077 1.09143 1.24041 1.21868 0.96341 0.90686 0.96732 1.21387 0.96775 0.97701 0.97270 1.18971 0.94889 0.93096 0.94347 1.21692 1.14697 0.94636 1.27282 0.92179 1.26007 1.00503 0.94887 0.98563 1.70090 1.42881 1.00054 1.44434 0.85488 0.79147 0.77438 0.78901 1.19086 1.20820 1.19169 1.23957 0.88806 0.98825 1.00237 0.93383 0.90932 0.92510 0.93330 0.90353 0.90267 0.90146 0.88237 0.83398 0.95590 0.91952 0.92876 0.92990 0.99040 0.99060 0.92752 0.89487 0.90429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.09 10.24 71.98 0.74 -1.35 16 2 C 0.01 0.21 5.54 86.30 0.48 0.69 16 3 N -0.48 -10.01 6.33 -927.82 -5.88 -15.89 16 4 C -0.02 -0.50 7.33 83.58 0.61 0.11 16 5 C 0.06 1.38 4.53 45.37 0.21 1.59 16 6 N -0.68 -18.54 6.65 -490.66 -3.26 -21.80 16 7 C 0.07 2.47 5.53 86.30 0.48 2.95 16 8 C -0.09 -3.86 5.41 30.59 0.17 -3.69 16 9 C 0.02 1.32 4.97 29.85 0.15 1.47 16 10 C -0.55 -31.52 9.11 25.60 0.23 -31.29 16 11 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 12 C 0.00 -0.12 5.46 84.66 0.46 0.35 16 13 N -0.93 -57.57 13.29 21.45 0.28 -57.29 16 14 Si 0.97 44.60 29.54 68.60 2.03 46.62 16 15 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 16 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 17 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 18 C 0.01 0.23 7.49 83.58 0.63 0.86 16 19 H 0.05 0.77 8.14 -2.38 -0.02 0.75 16 20 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 21 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 22 H 0.05 0.77 7.30 -2.39 -0.02 0.76 16 23 H 0.08 1.21 8.08 -2.38 -0.02 1.19 16 24 H 0.08 1.50 7.12 -2.38 -0.02 1.48 16 25 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 26 H 0.10 2.53 7.88 -2.39 -0.02 2.51 16 27 H 0.35 8.65 8.20 -89.69 -0.74 7.91 16 28 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 30 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 31 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 32 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 33 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 34 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 35 H 0.09 1.78 8.14 -2.38 -0.02 1.76 16 36 H 0.08 1.54 7.91 -2.39 -0.02 1.52 16 Total: -1.00 -63.20 294.84 -2.40 -65.60 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: 0.29 Total: 11.07 kcal Atomic # 6 Polarization: -32.46 SS G_CDS: 4.15 Total: -28.31 kcal Atomic # 7 Polarization: -86.12 SS G_CDS: -8.86 Total: -94.98 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.62 kcal Total: -63.20 -2.40 -65.60 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382273207.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.883 kcal (2) G-P(sol) polarization free energy of solvation -63.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds