Wall clock time and date at job start Mon Mar 30 2020 03:14:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08993 * 109.47221 * 2 1 4 4 C 1.50696 * 109.46964 * 239.99412 * 2 1 3 5 5 H 1.07994 * 120.00237 * 243.97342 * 4 2 1 6 6 C 1.37877 * 120.00036 * 63.97671 * 4 2 1 7 7 N 1.31513 * 120.00458 * 195.70947 * 6 4 2 8 8 Si 1.86808 * 119.99803 * 15.70902 * 6 4 2 9 9 H 1.48500 * 109.47184 * 95.20808 * 8 6 4 10 10 H 1.48507 * 109.46744 * 215.20478 * 8 6 4 11 11 H 1.48499 * 109.47073 * 335.20248 * 8 6 4 12 12 N 1.46895 * 109.46523 * 119.99739 * 2 1 3 13 13 C 1.47479 * 111.00494 * 285.34110 * 12 2 1 14 14 C 1.53504 * 87.93400 * 221.30181 * 13 12 2 15 15 C 1.53004 * 114.17023 * 139.67295 * 14 13 12 16 16 N 1.46891 * 109.47193 * 91.15627 * 15 14 13 17 17 C 1.46902 * 111.00138 * 66.05099 * 16 15 14 18 18 C 1.46908 * 110.99874 * 189.99920 * 16 15 14 19 19 C 1.47486 * 110.99797 * 189.37147 * 12 2 1 20 20 H 1.08999 * 109.47752 * 185.86475 * 1 2 3 21 21 H 1.09002 * 109.47257 * 305.86800 * 1 2 3 22 22 H 1.09004 * 109.46826 * 65.86533 * 1 2 3 23 23 H 0.96999 * 120.00506 * 180.02562 * 7 6 4 24 24 H 1.09003 * 113.47133 * 336.06995 * 13 12 2 25 25 H 1.09001 * 113.47612 * 106.53043 * 13 12 2 26 26 H 1.08996 * 114.34568 * 272.36245 * 14 13 12 27 27 H 1.09003 * 109.46966 * 211.16128 * 15 14 13 28 28 H 1.09000 * 109.46774 * 331.15313 * 15 14 13 29 29 H 1.09002 * 109.47433 * 59.99528 * 17 16 15 30 30 H 1.09006 * 109.47066 * 180.02562 * 17 16 15 31 31 H 1.08997 * 109.46421 * 299.99380 * 17 16 15 32 32 H 1.09001 * 109.47042 * 59.99875 * 18 16 15 33 33 H 1.09001 * 109.47300 * 179.97438 * 18 16 15 34 34 H 1.09003 * 109.47100 * 299.99765 * 18 16 15 35 35 H 1.09001 * 113.47641 * 253.47559 * 19 12 2 36 36 H 1.09001 * 113.47397 * 23.87598 * 19 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.5992 -1.6245 -1.1325 6 6 1.7682 -0.1937 -2.4810 7 7 1.9242 -0.9447 -3.5493 8 14 1.1887 1.5734 -2.6581 9 1 2.3540 2.4510 -2.9357 10 1 0.2204 1.6666 -3.7801 11 1 0.5310 2.0071 -1.3993 12 7 2.0195 -0.6924 1.1995 13 6 1.8523 0.1476 2.4001 14 6 3.2407 -0.3232 2.8549 15 6 4.0996 0.7754 3.4846 16 7 3.8807 0.7961 4.9369 17 6 4.3775 -0.4371 5.5619 18 6 4.4997 1.9811 5.5458 19 6 3.4766 -0.5211 1.3510 20 1 -0.3634 -1.0222 0.1050 21 1 -0.3634 0.6021 0.8328 22 1 -0.3633 0.4202 -0.9379 23 1 1.7387 -0.5810 -4.4292 24 1 1.8058 1.2142 2.1806 25 1 1.0455 -0.1846 3.0534 26 1 3.2350 -1.2484 3.4312 27 1 5.1514 0.5772 3.2784 28 1 3.8221 1.7408 3.0614 29 1 5.4460 -0.5363 5.3709 30 1 4.2024 -0.3956 6.6370 31 1 3.8520 -1.2945 5.1415 32 1 4.0632 2.8816 5.1136 33 1 4.3221 1.9718 6.6212 34 1 5.5727 1.9694 5.3542 35 1 4.0464 -1.4199 1.1153 36 1 3.8637 0.3666 0.8507 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000382278889.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:48 Heat of formation + Delta-G solvation = 22.386430 kcal Electronic energy + Delta-G solvation = -14618.313056 eV Core-core repulsion = 12330.970879 eV Total energy + Delta-G solvation = -2287.342177 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.15998 -38.03065 -35.52258 -33.25231 -29.97399 -28.43062 -27.68797 -26.13472 -25.97974 -22.89127 -21.23533 -20.46918 -18.84730 -17.09699 -16.88050 -16.29090 -16.03758 -15.78715 -15.00561 -14.78998 -14.63154 -14.21506 -13.65647 -13.45620 -13.38087 -13.17234 -12.81071 -12.64235 -12.56156 -12.35661 -12.20147 -11.80852 -11.68830 -11.35596 -11.16507 -11.02603 -10.62872 -9.53964 -9.23314 -8.32358 -6.31074 1.31278 1.34719 1.45264 2.32987 2.96719 3.01765 3.36358 3.64203 3.94737 4.28502 4.39498 4.42436 4.48127 4.51819 4.57662 4.64363 4.70501 4.74652 4.79739 4.83307 4.84807 4.91746 4.97439 5.04809 5.07621 5.11455 5.31094 5.41325 5.69156 5.80007 6.08947 6.13451 6.16637 6.62951 6.72844 7.32481 8.84912 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.050112 B = 0.007038 C = 0.006879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.617052 B = 3977.421681 C = 4069.588047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.157 3.843 3 H 0.002 0.998 4 C -0.516 4.516 5 H 0.029 0.971 6 C 0.018 3.982 7 N -0.941 5.941 8 Si 0.930 3.070 9 H -0.276 1.276 10 H -0.282 1.282 11 H -0.231 1.231 12 N -0.485 5.485 13 C 0.012 3.988 14 C -0.092 4.092 15 C 0.072 3.928 16 N -0.558 5.558 17 C 0.021 3.979 18 C 0.024 3.976 19 C 0.017 3.983 20 H 0.044 0.956 21 H 0.052 0.948 22 H 0.040 0.960 23 H 0.266 0.734 24 H 0.061 0.939 25 H 0.082 0.918 26 H 0.104 0.896 27 H 0.040 0.960 28 H 0.073 0.927 29 H 0.027 0.973 30 H 0.079 0.921 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.080 0.920 34 H 0.027 0.973 35 H 0.062 0.938 36 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.756 6.928 17.541 19.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.048 3.952 3 H 0.019 0.981 4 C -0.554 4.554 5 H 0.048 0.952 6 C -0.180 4.180 7 N -0.581 5.581 8 Si 0.753 3.247 9 H -0.202 1.202 10 H -0.208 1.208 11 H -0.154 1.154 12 N -0.207 5.207 13 C -0.117 4.117 14 C -0.111 4.111 15 C -0.056 4.056 16 N -0.282 5.282 17 C -0.127 4.127 18 C -0.124 4.124 19 C -0.112 4.112 20 H 0.063 0.937 21 H 0.071 0.929 22 H 0.059 0.941 23 H 0.075 0.925 24 H 0.079 0.921 25 H 0.101 0.899 26 H 0.123 0.877 27 H 0.058 0.942 28 H 0.091 0.909 29 H 0.045 0.955 30 H 0.098 0.902 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.098 0.902 34 H 0.045 0.955 35 H 0.081 0.919 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 2.903 6.283 17.368 18.696 hybrid contribution 1.040 1.067 -1.179 1.900 sum 3.943 7.350 16.189 18.211 Atomic orbital electron populations 1.21956 0.96715 1.00572 0.99605 1.20026 0.93411 0.91975 0.89766 0.98071 1.21050 1.34636 1.09264 0.90410 0.95227 1.25770 0.95167 1.01822 0.95235 1.70120 1.51133 1.37655 0.99202 0.86110 0.78699 0.80527 0.79336 1.20199 1.20826 1.15430 1.68811 1.07671 1.41649 1.02619 1.23752 0.98387 0.96379 0.93178 1.22680 0.95130 0.99457 0.93792 1.22021 0.97397 0.98393 0.87792 1.61962 1.59065 1.03824 1.03336 1.22477 0.97758 0.92213 1.00280 1.22424 0.96760 0.92606 1.00594 1.23542 0.91808 1.00415 0.95486 0.93668 0.92932 0.94093 0.92493 0.92061 0.89918 0.87749 0.94183 0.90858 0.95463 0.90204 0.91405 0.91312 0.90166 0.95457 0.91947 0.92522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.78 8.49 71.98 0.61 -5.17 16 2 C 0.16 7.54 1.20 44.17 0.05 7.59 16 3 H 0.00 0.08 6.20 -2.39 -0.01 0.07 16 4 C -0.52 -30.15 8.68 25.60 0.22 -29.93 16 5 H 0.03 1.95 8.06 -2.91 -0.02 1.93 16 6 C 0.02 1.06 5.32 84.65 0.45 1.51 16 7 N -0.94 -59.45 13.96 21.45 0.30 -59.15 16 8 Si 0.93 43.84 25.74 68.60 1.77 45.61 16 9 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 10 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 11 H -0.23 -9.93 5.51 99.48 0.55 -9.38 16 12 N -0.49 -20.61 6.12 -906.91 -5.55 -26.16 16 13 C 0.01 0.40 6.70 83.57 0.56 0.96 16 14 C -0.09 -2.66 4.04 -10.45 -0.04 -2.71 16 15 C 0.07 1.75 4.87 86.31 0.42 2.17 16 16 N -0.56 -11.94 5.02 -948.82 -4.76 -16.70 16 17 C 0.02 0.38 9.37 127.69 1.20 1.58 16 18 C 0.02 0.41 9.57 127.69 1.22 1.63 16 19 C 0.02 0.66 6.74 83.57 0.56 1.22 16 20 H 0.04 2.04 8.14 -2.39 -0.02 2.02 16 21 H 0.05 1.97 7.84 -2.39 -0.02 1.95 16 22 H 0.04 1.83 4.98 -2.38 -0.01 1.82 16 23 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 24 H 0.06 2.00 7.42 -2.39 -0.02 1.98 16 25 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 26 H 0.10 2.92 6.26 -2.39 -0.01 2.91 16 27 H 0.04 0.94 8.12 -2.39 -0.02 0.92 16 28 H 0.07 1.80 7.73 -2.39 -0.02 1.78 16 29 H 0.03 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.08 1.21 8.12 -2.38 -0.02 1.19 16 31 H 0.07 1.32 6.28 -2.39 -0.02 1.30 16 32 H 0.07 1.13 8.12 -2.39 -0.02 1.11 16 33 H 0.08 1.12 8.12 -2.39 -0.02 1.10 16 34 H 0.03 0.43 8.14 -2.39 -0.02 0.42 16 35 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 36 H 0.06 2.20 7.74 -2.39 -0.02 2.18 16 Total: -1.00 -66.17 279.55 -2.12 -68.29 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: 0.86 Total: 9.27 kcal Atomic # 6 Polarization: -26.41 SS G_CDS: 5.26 Total: -21.15 kcal Atomic # 7 Polarization: -92.00 SS G_CDS: -10.01 Total: -102.01 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 1.77 Total: 45.61 kcal Total: -66.17 -2.12 -68.29 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382278889.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.680 kcal (2) G-P(sol) polarization free energy of solvation -66.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.294 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds