Wall clock time and date at job start Mon Mar 30 2020 03:14:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.46660 * 2 1 4 4 C 1.50695 * 109.47240 * 119.99727 * 2 1 3 5 5 H 1.08007 * 119.99464 * 119.99934 * 4 2 1 6 6 C 1.37874 * 120.00380 * 300.00501 * 4 2 1 7 7 N 1.31511 * 119.99874 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00207 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47170 * 359.97438 * 8 6 4 10 10 H 1.48499 * 109.47480 * 119.99520 * 8 6 4 11 11 H 1.48502 * 109.46866 * 239.99600 * 8 6 4 12 12 N 1.46897 * 109.46761 * 240.00115 * 2 1 3 13 13 C 1.47962 * 110.99847 * 172.73682 * 12 2 1 14 14 C 1.53932 * 86.30325 * 222.47152 * 13 12 2 15 15 C 1.52999 * 113.73407 * 138.02299 * 14 13 12 16 16 N 1.46904 * 109.47142 * 175.00218 * 15 14 13 17 17 C 1.46897 * 111.00027 * 170.00129 * 16 15 14 18 18 C 1.46904 * 110.99911 * 293.95011 * 16 15 14 19 19 C 1.48189 * 111.07777 * 73.44914 * 12 2 1 20 20 H 1.09001 * 109.47238 * 305.93959 * 1 2 3 21 21 H 1.09000 * 109.47550 * 65.94533 * 1 2 3 22 22 H 1.09000 * 109.47061 * 185.94484 * 1 2 3 23 23 H 0.96997 * 120.00487 * 180.02562 * 7 6 4 24 24 H 1.09000 * 113.76497 * 108.09677 * 13 12 2 25 25 H 1.09002 * 113.75922 * 336.84090 * 13 12 2 26 26 H 1.08999 * 113.73536 * 269.20328 * 14 13 12 27 27 H 1.08998 * 109.47512 * 295.00039 * 15 14 13 28 28 H 1.09002 * 109.47511 * 55.00083 * 15 14 13 29 29 H 1.09002 * 109.47149 * 59.99822 * 17 16 15 30 30 H 1.08999 * 109.47369 * 179.97438 * 17 16 15 31 31 H 1.08996 * 109.47209 * 299.99893 * 17 16 15 32 32 H 1.09004 * 109.47015 * 60.00157 * 18 16 15 33 33 H 1.08997 * 109.47249 * 180.02562 * 18 16 15 34 34 H 1.08997 * 109.47316 * 300.00571 * 18 16 15 35 35 H 1.08996 * 113.65728 * 23.13465 * 19 12 2 36 36 H 1.09001 * 113.92098 * 251.81988 * 19 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2393 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3226 -1.1195 4.0079 9 1 3.1476 -2.2862 3.6038 10 1 3.1473 -0.1857 4.8160 11 1 1.1679 -1.5865 4.8165 12 7 2.0196 -0.6925 -1.1994 13 6 3.4882 -0.5628 -1.3242 14 6 3.2389 -0.3125 -2.8224 15 6 4.0967 0.8096 -3.4104 16 7 3.8728 0.8888 -4.8601 17 6 4.4910 2.0966 -5.4231 18 6 4.3662 -0.3188 -5.5357 19 6 1.8258 0.1386 -2.4110 20 1 -0.3634 0.6032 0.8320 21 1 -0.3634 0.4189 -0.9384 22 1 -0.3633 -1.0221 0.1064 23 1 0.7094 1.1618 3.4843 24 1 4.0298 -1.4859 -1.1173 25 1 3.8994 0.2984 -0.7976 26 1 3.2530 -1.2194 -3.4270 27 1 3.8216 1.7576 -2.9481 28 1 5.1491 0.6025 -3.2161 29 1 5.5646 2.0764 -5.2358 30 1 4.3105 2.1301 -6.4975 31 1 4.0569 2.9794 -4.9537 32 1 3.8414 -1.1920 -5.1482 33 1 4.1885 -0.2337 -6.6077 34 1 5.4353 -0.4265 -5.3525 35 1 1.7490 1.2055 -2.2018 36 1 1.0392 -0.2226 -3.0735 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000382278898.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:51 Heat of formation + Delta-G solvation = 16.581935 kcal Electronic energy + Delta-G solvation = -14576.990141 eV Core-core repulsion = 12289.396262 eV Total energy + Delta-G solvation = -2287.593879 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.89194 -37.98392 -35.53870 -32.63384 -29.65211 -28.43324 -27.80278 -26.26292 -25.83580 -22.89097 -21.30165 -20.37384 -18.40035 -17.06258 -16.85759 -16.27255 -16.00793 -15.74735 -15.08432 -14.83378 -14.30709 -13.77341 -13.43133 -13.32580 -13.21546 -13.01993 -12.77383 -12.62354 -12.54598 -12.42953 -12.20003 -12.13583 -11.76026 -11.39617 -11.01587 -10.85750 -10.56697 -9.39777 -9.22582 -8.13547 -6.25757 1.39464 1.41170 1.53432 2.41066 2.98382 3.14883 3.38410 3.68816 3.94055 4.29230 4.40599 4.45584 4.55383 4.58540 4.67919 4.74233 4.76955 4.82012 4.83350 4.87323 4.92500 5.02557 5.03267 5.05665 5.12901 5.41591 5.48480 5.48970 5.70390 6.06248 6.10888 6.16808 6.29200 6.58051 6.87755 7.43484 8.93151 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.052820 B = 0.006590 C = 0.006361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 529.978548 B = 4248.154247 C = 4400.962029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.185 3.815 3 H -0.027 1.027 4 C -0.520 4.520 5 H 0.052 0.948 6 C 0.010 3.990 7 N -0.921 5.921 8 Si 0.962 3.038 9 H -0.269 1.269 10 H -0.279 1.279 11 H -0.279 1.279 12 N -0.495 5.495 13 C 0.022 3.978 14 C -0.089 4.089 15 C 0.071 3.929 16 N -0.560 5.560 17 C 0.024 3.976 18 C 0.021 3.979 19 C 0.016 3.984 20 H 0.056 0.944 21 H 0.027 0.973 22 H 0.026 0.974 23 H 0.262 0.738 24 H 0.076 0.924 25 H 0.049 0.951 26 H 0.106 0.894 27 H 0.064 0.936 28 H 0.042 0.958 29 H 0.028 0.972 30 H 0.081 0.919 31 H 0.064 0.936 32 H 0.068 0.932 33 H 0.079 0.921 34 H 0.028 0.972 35 H 0.049 0.951 36 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.172 0.267 -13.570 15.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.078 3.922 3 H -0.010 1.010 4 C -0.558 4.558 5 H 0.071 0.929 6 C -0.188 4.188 7 N -0.561 5.561 8 Si 0.787 3.213 9 H -0.193 1.193 10 H -0.204 1.204 11 H -0.205 1.205 12 N -0.218 5.218 13 C -0.108 4.108 14 C -0.108 4.108 15 C -0.057 4.057 16 N -0.284 5.284 17 C -0.124 4.124 18 C -0.126 4.126 19 C -0.113 4.113 20 H 0.075 0.925 21 H 0.046 0.954 22 H 0.045 0.955 23 H 0.071 0.929 24 H 0.095 0.905 25 H 0.067 0.933 26 H 0.124 0.876 27 H 0.082 0.918 28 H 0.060 0.940 29 H 0.047 0.953 30 H 0.100 0.900 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.098 0.902 34 H 0.047 0.953 35 H 0.067 0.933 36 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 6.270 -0.229 -13.455 14.846 hybrid contribution 1.160 0.622 1.387 1.912 sum 7.430 0.392 -12.068 14.177 Atomic orbital electron populations 1.21516 0.97528 0.99383 0.98850 1.19553 0.92996 0.90791 0.88905 1.00961 1.21352 1.31122 1.12191 0.91147 0.92941 1.25742 0.95315 0.95757 1.01996 1.70035 1.37812 1.24180 1.24053 0.85450 0.78156 0.78592 0.79090 1.19286 1.20427 1.20504 1.68515 1.07715 1.42806 1.02773 1.23608 0.91568 1.00473 0.95105 1.22909 0.94405 0.99071 0.94451 1.22051 0.97488 0.98160 0.88005 1.61951 1.59235 1.03970 1.03227 1.22414 0.96783 0.92152 1.01003 1.22476 0.97843 0.92557 0.99763 1.23792 0.98177 0.95911 0.93422 0.92484 0.95434 0.95456 0.92883 0.90512 0.93272 0.87622 0.91753 0.94002 0.95339 0.90032 0.91688 0.91296 0.90182 0.95319 0.93321 0.89993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.93 9.05 71.98 0.65 -5.28 16 2 C 0.19 9.84 1.65 44.17 0.07 9.92 16 3 H -0.03 -1.58 7.69 -2.39 -0.02 -1.60 16 4 C -0.52 -29.66 8.21 25.60 0.21 -29.45 16 5 H 0.05 3.01 7.71 -2.91 -0.02 2.99 16 6 C 0.01 0.59 5.30 84.65 0.45 1.04 16 7 N -0.92 -54.22 11.39 21.45 0.24 -53.97 16 8 Si 0.96 44.57 29.54 68.60 2.03 46.59 16 9 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 10 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 11 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 12 N -0.50 -22.22 5.97 -883.88 -5.28 -27.50 16 13 C 0.02 0.86 6.85 86.40 0.59 1.45 16 14 C -0.09 -2.78 3.89 -10.15 -0.04 -2.82 16 15 C 0.07 1.90 4.81 86.30 0.42 2.32 16 16 N -0.56 -13.07 5.02 -948.84 -4.76 -17.83 16 17 C 0.02 0.46 9.57 127.69 1.22 1.68 16 18 C 0.02 0.41 9.37 127.69 1.20 1.61 16 19 C 0.02 0.59 6.74 86.36 0.58 1.17 16 20 H 0.06 3.20 6.25 -2.39 -0.01 3.18 16 21 H 0.03 1.25 7.51 -2.39 -0.02 1.24 16 22 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 23 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 24 H 0.08 2.87 8.14 -2.39 -0.02 2.85 16 25 H 0.05 2.04 7.79 -2.39 -0.02 2.02 16 26 H 0.11 3.04 6.26 -2.39 -0.01 3.03 16 27 H 0.06 1.85 7.76 -2.39 -0.02 1.83 16 28 H 0.04 1.05 8.12 -2.39 -0.02 1.03 16 29 H 0.03 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.08 1.26 8.12 -2.39 -0.02 1.24 16 31 H 0.06 1.24 8.12 -2.39 -0.02 1.22 16 32 H 0.07 1.38 6.29 -2.38 -0.01 1.36 16 33 H 0.08 1.28 8.12 -2.39 -0.02 1.26 16 34 H 0.03 0.52 8.14 -2.39 -0.02 0.50 16 35 H 0.05 1.90 7.49 -2.39 -0.02 1.89 16 36 H 0.08 2.88 8.14 -2.39 -0.02 2.86 16 Total: -1.00 -62.34 284.92 -1.40 -63.74 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: 1.02 Total: 7.33 kcal Atomic # 6 Polarization: -23.71 SS G_CDS: 5.35 Total: -18.36 kcal Atomic # 7 Polarization: -89.50 SS G_CDS: -9.80 Total: -99.30 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.59 kcal Total: -62.34 -1.40 -63.74 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382278898.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.321 kcal (2) G-P(sol) polarization free energy of solvation -62.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.739 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds