Wall clock time and date at job start Mon Mar 30 2020 03:18:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08992 * 109.46809 * 2 1 4 4 C 1.50695 * 109.47180 * 239.99592 * 2 1 3 5 5 H 1.08004 * 120.00119 * 245.81502 * 4 2 1 6 6 C 1.37881 * 119.99941 * 65.81313 * 4 2 1 7 7 N 1.31514 * 119.99798 * 5.39270 * 6 4 2 8 8 Si 1.86798 * 120.00027 * 185.38872 * 6 4 2 9 9 H 1.48497 * 109.47141 * 95.00042 * 8 6 4 10 10 H 1.48506 * 109.47092 * 215.00011 * 8 6 4 11 11 H 1.48497 * 109.47225 * 335.00045 * 8 6 4 12 12 N 1.46899 * 109.46844 * 119.99898 * 2 1 3 13 13 C 1.46901 * 111.00216 * 41.54491 * 12 2 1 14 14 C 1.46899 * 110.99829 * 277.59362 * 12 2 1 15 15 C 1.53005 * 112.84877 * 190.60734 * 14 12 2 16 16 N 1.46891 * 109.47500 * 51.23171 * 15 14 12 17 17 C 1.53783 * 113.61653 * 321.79824 * 14 12 2 18 18 C 1.53956 * 87.01849 * 89.22978 * 17 14 12 19 19 C 1.53779 * 113.61773 * 59.40712 * 14 12 2 20 20 H 1.09006 * 109.47210 * 192.34134 * 1 2 3 21 21 H 1.08998 * 109.47054 * 312.34252 * 1 2 3 22 22 H 1.08994 * 109.47027 * 72.34639 * 1 2 3 23 23 H 0.97005 * 119.99383 * 179.97438 * 7 6 4 24 24 H 1.08997 * 109.47214 * 290.30951 * 13 12 2 25 25 H 1.09003 * 109.46772 * 50.31355 * 13 12 2 26 26 H 1.09003 * 109.47211 * 170.30587 * 13 12 2 27 27 H 1.09006 * 109.46380 * 291.23362 * 15 14 12 28 28 H 1.08999 * 109.47287 * 171.23941 * 15 14 12 29 29 H 1.00902 * 111.00064 * 174.89498 * 16 15 14 30 30 H 1.00902 * 111.00410 * 298.85667 * 16 15 14 31 31 H 1.08999 * 113.61403 * 203.75321 * 17 14 12 32 32 H 1.09008 * 113.61009 * 334.65421 * 17 14 12 33 33 H 1.09001 * 113.53374 * 270.81149 * 18 17 14 34 34 H 1.09002 * 113.73801 * 139.94736 * 18 17 14 35 35 H 1.09002 * 113.61272 * 25.34761 * 19 14 12 36 36 H 1.09002 * 113.61544 * 156.16731 * 19 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.5737 -1.6401 -1.1340 6 6 1.8009 -0.1737 -2.4792 7 7 1.2363 1.0086 -2.5923 8 14 2.2895 -1.1259 -4.0102 9 1 1.1195 -1.8905 -4.5119 10 1 2.7474 -0.1779 -5.0576 11 1 3.3899 -2.0662 -3.6782 12 7 2.0196 -0.6925 1.1995 13 6 1.2274 -1.8994 1.4709 14 6 2.0242 0.2065 2.3613 15 6 2.7617 -0.3827 3.5654 16 7 4.0921 -0.8440 3.1472 17 6 2.4465 1.6463 2.0245 18 6 0.9596 1.9316 1.7451 19 6 0.6375 0.7749 2.7059 20 1 -0.3634 -1.0040 0.2197 21 1 -0.3633 0.6922 0.7596 22 1 -0.3633 0.3116 -0.9792 23 1 1.0738 1.3863 -3.4709 24 1 0.2276 -1.6121 1.7965 25 1 1.1558 -2.4987 0.5632 26 1 1.7110 -2.4830 2.2543 27 1 2.1939 -1.2239 3.9632 28 1 2.8675 0.3810 4.3360 29 1 4.6305 -1.1610 3.9395 30 1 4.0206 -1.5662 2.4462 31 1 2.8437 2.1958 2.8780 32 1 3.0798 1.7201 1.1403 33 1 0.6655 1.7373 0.7137 34 1 0.6243 2.9043 2.1049 35 1 -0.1876 0.1461 2.3712 36 1 0.5387 1.0843 3.7464 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385338853.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:02 Heat of formation + Delta-G solvation = 64.242702 kcal Electronic energy + Delta-G solvation = -15652.860316 eV Core-core repulsion = 13367.333163 eV Total energy + Delta-G solvation = -2285.527153 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.27400 -34.48152 -33.55481 -32.15621 -29.09523 -26.48845 -25.60392 -24.73209 -24.04166 -21.24740 -20.02980 -17.65795 -16.46102 -15.65292 -15.10519 -14.72863 -14.30008 -13.80069 -13.39902 -13.25762 -13.02256 -12.20480 -11.95372 -11.71971 -11.15800 -10.99577 -10.82601 -10.74198 -10.53767 -10.23599 -10.16559 -9.85568 -9.74273 -9.60594 -9.37937 -8.72352 -8.24543 -8.11492 -7.07103 -5.95672 -3.95162 3.34473 3.41740 3.45967 4.46872 4.79941 5.07280 5.28364 5.38434 5.42421 5.54186 5.58560 5.86499 5.98538 6.08993 6.14830 6.20752 6.34997 6.40697 6.56929 6.65114 6.74966 6.82666 6.86757 6.95544 7.06950 7.15691 7.51907 7.63289 7.68502 7.93553 7.97949 8.27328 8.42789 8.69950 9.10352 9.67833 11.13172 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.037037 B = 0.010918 C = 0.009892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.811851 B = 2564.018828 C = 2829.787329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.196 3.804 3 H 0.066 0.934 4 C -0.492 4.492 5 H 0.059 0.941 6 C 0.057 3.943 7 N -0.896 5.896 8 Si 0.892 3.108 9 H -0.284 1.284 10 H -0.288 1.288 11 H -0.274 1.274 12 N -0.501 5.501 13 C 0.032 3.968 14 C 0.099 3.901 15 C 0.089 3.911 16 N -0.838 5.838 17 C -0.118 4.118 18 C -0.175 4.175 19 C -0.176 4.176 20 H 0.031 0.969 21 H 0.042 0.958 22 H 0.070 0.930 23 H 0.259 0.741 24 H 0.020 0.980 25 H 0.070 0.930 26 H 0.037 0.963 27 H 0.014 0.986 28 H 0.062 0.938 29 H 0.324 0.676 30 H 0.353 0.647 31 H 0.068 0.932 32 H 0.079 0.921 33 H 0.132 0.868 34 H 0.049 0.951 35 H 0.070 0.930 36 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.159 -1.738 9.876 10.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C 0.090 3.910 3 H 0.084 0.916 4 C -0.531 4.531 5 H 0.078 0.922 6 C -0.143 4.143 7 N -0.536 5.536 8 Si 0.720 3.280 9 H -0.211 1.211 10 H -0.214 1.214 11 H -0.199 1.199 12 N -0.223 5.223 13 C -0.116 4.116 14 C 0.007 3.993 15 C -0.042 4.042 16 N -0.368 5.368 17 C -0.156 4.156 18 C -0.212 4.212 19 C -0.216 4.216 20 H 0.050 0.950 21 H 0.060 0.940 22 H 0.089 0.911 23 H 0.068 0.932 24 H 0.038 0.962 25 H 0.089 0.911 26 H 0.056 0.944 27 H 0.032 0.968 28 H 0.081 0.919 29 H 0.135 0.865 30 H 0.168 0.832 31 H 0.087 0.913 32 H 0.098 0.902 33 H 0.149 0.851 34 H 0.068 0.932 35 H 0.089 0.911 36 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.401 -1.021 9.375 9.439 hybrid contribution -1.056 -1.147 -0.307 1.589 sum -0.656 -2.168 9.069 9.347 Atomic orbital electron populations 1.23063 1.01317 0.98687 1.02201 1.19699 0.89288 0.96197 0.85797 0.91633 1.21135 1.34294 1.07855 0.89834 0.92245 1.24899 0.95710 0.94885 0.98838 1.69941 1.44333 1.15776 1.23504 0.86579 0.78572 0.79801 0.83021 1.21085 1.21424 1.19899 1.62273 1.52488 1.05293 1.02270 1.22262 0.95040 0.93824 1.00517 1.22151 0.92880 0.92789 0.91471 1.21616 0.89379 0.97545 0.95705 1.58489 1.15795 1.46789 1.15698 1.22936 0.96476 0.94761 1.01432 1.23916 0.97099 0.96866 1.03282 1.23758 0.99632 0.99448 0.98768 0.95002 0.93965 0.91106 0.93157 0.96210 0.91096 0.94386 0.96782 0.91921 0.86495 0.83185 0.91336 0.90204 0.85084 0.93240 0.91114 0.91558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.49 6.90 37.16 0.26 -4.23 16 2 C 0.20 4.75 1.52 -68.87 -0.10 4.64 16 3 H 0.07 1.74 4.12 -51.93 -0.21 1.52 16 4 C -0.49 -13.41 8.09 -34.44 -0.28 -13.69 16 5 H 0.06 1.65 7.78 -52.48 -0.41 1.24 16 6 C 0.06 1.58 5.16 -17.82 -0.09 1.49 16 7 N -0.90 -25.45 12.03 55.43 0.67 -24.79 16 8 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 9 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 10 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 11 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 12 N -0.50 -10.42 3.94 -219.67 -0.87 -11.29 16 13 C 0.03 0.61 7.82 60.07 0.47 1.08 16 14 C 0.10 1.79 0.86 -130.79 -0.11 1.68 16 15 C 0.09 1.39 5.83 -3.83 -0.02 1.37 16 16 N -0.84 -12.90 9.56 -10.37 -0.10 -13.00 16 17 C -0.12 -2.23 6.81 -25.83 -0.18 -2.40 16 18 C -0.18 -3.28 6.60 -25.83 -0.17 -3.45 16 19 C -0.18 -3.03 6.38 -25.92 -0.17 -3.19 16 20 H 0.03 0.70 5.71 -51.93 -0.30 0.40 16 21 H 0.04 0.89 3.62 -51.93 -0.19 0.70 16 22 H 0.07 1.84 6.58 -51.93 -0.34 1.50 16 23 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 24 H 0.02 0.36 5.10 -51.93 -0.27 0.10 16 25 H 0.07 1.44 7.43 -51.93 -0.39 1.05 16 26 H 0.04 0.63 7.27 -51.93 -0.38 0.25 16 27 H 0.01 0.21 7.45 -51.93 -0.39 -0.18 16 28 H 0.06 0.90 8.00 -51.93 -0.42 0.49 16 29 H 0.32 4.03 9.08 -39.29 -0.36 3.67 16 30 H 0.35 5.84 8.40 -39.29 -0.33 5.51 16 31 H 0.07 1.15 8.00 -51.93 -0.42 0.73 16 32 H 0.08 1.73 6.96 -51.92 -0.36 1.37 16 33 H 0.13 2.86 3.34 -51.93 -0.17 2.69 16 34 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.07 1.27 4.78 -51.93 -0.25 1.02 16 36 H 0.07 1.00 8.10 -51.93 -0.42 0.58 16 LS Contribution 260.52 15.07 3.93 3.93 Total: -1.00 -27.78 260.52 -6.93 -34.71 By element: Atomic # 1 Polarization: 15.79 SS G_CDS: -5.14 Total: 10.65 kcal Atomic # 6 Polarization: -16.32 SS G_CDS: -0.40 Total: -16.71 kcal Atomic # 7 Polarization: -48.77 SS G_CDS: -0.30 Total: -49.07 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -27.78 -6.93 -34.71 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385338853.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.949 kcal (2) G-P(sol) polarization free energy of solvation -27.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.707 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds