Wall clock time and date at job start Mon Mar 30 2020 03:18:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08992 * 109.46809 * 2 1 4 4 C 1.50695 * 109.47180 * 239.99592 * 2 1 3 5 5 H 1.08004 * 120.00119 * 245.81502 * 4 2 1 6 6 C 1.37881 * 119.99941 * 65.81313 * 4 2 1 7 7 N 1.31514 * 119.99798 * 5.39270 * 6 4 2 8 8 Si 1.86798 * 120.00027 * 185.38872 * 6 4 2 9 9 H 1.48497 * 109.47141 * 95.00042 * 8 6 4 10 10 H 1.48506 * 109.47092 * 215.00011 * 8 6 4 11 11 H 1.48497 * 109.47225 * 335.00045 * 8 6 4 12 12 N 1.46899 * 109.46844 * 119.99898 * 2 1 3 13 13 C 1.46901 * 111.00216 * 41.54491 * 12 2 1 14 14 C 1.46899 * 110.99829 * 277.59362 * 12 2 1 15 15 C 1.53005 * 112.84877 * 190.60734 * 14 12 2 16 16 N 1.46891 * 109.47500 * 51.23171 * 15 14 12 17 17 C 1.53783 * 113.61653 * 321.79824 * 14 12 2 18 18 C 1.53956 * 87.01849 * 89.22978 * 17 14 12 19 19 C 1.53779 * 113.61773 * 59.40712 * 14 12 2 20 20 H 1.09006 * 109.47210 * 192.34134 * 1 2 3 21 21 H 1.08998 * 109.47054 * 312.34252 * 1 2 3 22 22 H 1.08994 * 109.47027 * 72.34639 * 1 2 3 23 23 H 0.97005 * 119.99383 * 179.97438 * 7 6 4 24 24 H 1.08997 * 109.47214 * 290.30951 * 13 12 2 25 25 H 1.09003 * 109.46772 * 50.31355 * 13 12 2 26 26 H 1.09003 * 109.47211 * 170.30587 * 13 12 2 27 27 H 1.09006 * 109.46380 * 291.23362 * 15 14 12 28 28 H 1.08999 * 109.47287 * 171.23941 * 15 14 12 29 29 H 1.00902 * 111.00064 * 174.89498 * 16 15 14 30 30 H 1.00902 * 111.00410 * 298.85667 * 16 15 14 31 31 H 1.08999 * 113.61403 * 203.75321 * 17 14 12 32 32 H 1.09008 * 113.61009 * 334.65421 * 17 14 12 33 33 H 1.09001 * 113.53374 * 270.81149 * 18 17 14 34 34 H 1.09002 * 113.73801 * 139.94736 * 18 17 14 35 35 H 1.09002 * 113.61272 * 25.34761 * 19 14 12 36 36 H 1.09002 * 113.61544 * 156.16731 * 19 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.5737 -1.6401 -1.1340 6 6 1.8009 -0.1737 -2.4792 7 7 1.2363 1.0086 -2.5923 8 14 2.2895 -1.1259 -4.0102 9 1 1.1195 -1.8905 -4.5119 10 1 2.7474 -0.1779 -5.0576 11 1 3.3899 -2.0662 -3.6782 12 7 2.0196 -0.6925 1.1995 13 6 1.2274 -1.8994 1.4709 14 6 2.0242 0.2065 2.3613 15 6 2.7617 -0.3827 3.5654 16 7 4.0921 -0.8440 3.1472 17 6 2.4465 1.6463 2.0245 18 6 0.9596 1.9316 1.7451 19 6 0.6375 0.7749 2.7059 20 1 -0.3634 -1.0040 0.2197 21 1 -0.3633 0.6922 0.7596 22 1 -0.3633 0.3116 -0.9792 23 1 1.0738 1.3863 -3.4709 24 1 0.2276 -1.6121 1.7965 25 1 1.1558 -2.4987 0.5632 26 1 1.7110 -2.4830 2.2543 27 1 2.1939 -1.2239 3.9632 28 1 2.8675 0.3810 4.3360 29 1 4.6305 -1.1610 3.9395 30 1 4.0206 -1.5662 2.4462 31 1 2.8437 2.1958 2.8780 32 1 3.0798 1.7201 1.1403 33 1 0.6655 1.7373 0.7137 34 1 0.6243 2.9043 2.1049 35 1 -0.1876 0.1461 2.3712 36 1 0.5387 1.0843 3.7464 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385338853.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:02 Heat of formation + Delta-G solvation = 44.252027 kcal Electronic energy + Delta-G solvation = -15653.727177 eV Core-core repulsion = 13367.333163 eV Total energy + Delta-G solvation = -2286.394014 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.80650 -36.19964 -34.86916 -34.06099 -30.85209 -28.15322 -27.02477 -26.66342 -25.52546 -22.69714 -21.79227 -19.23120 -18.32230 -17.11753 -16.92815 -16.39240 -15.71381 -15.30198 -14.89874 -14.76612 -14.57548 -14.10617 -13.47405 -13.16141 -12.96371 -12.77483 -12.56171 -12.38248 -12.20878 -12.07447 -11.98843 -11.59072 -11.31853 -11.16005 -10.90702 -10.64710 -10.31909 -9.30657 -8.68991 -8.05836 -6.11939 1.41202 1.42964 1.53168 2.46141 3.23702 3.35477 3.68633 3.85290 4.04904 4.12022 4.29777 4.56270 4.60728 4.69629 4.77091 4.78160 4.87185 4.94155 4.98224 4.99234 5.08882 5.19111 5.30137 5.32562 5.40433 5.53672 5.66680 5.82903 5.86742 6.33215 6.47326 6.65950 6.86325 6.92301 7.02063 7.55098 9.01182 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.037037 B = 0.010918 C = 0.009892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.811851 B = 2564.018828 C = 2829.787329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.204 3.796 3 H 0.040 0.960 4 C -0.508 4.508 5 H 0.049 0.951 6 C 0.011 3.989 7 N -0.921 5.921 8 Si 0.950 3.050 9 H -0.279 1.279 10 H -0.287 1.287 11 H -0.271 1.271 12 N -0.512 5.512 13 C 0.037 3.963 14 C 0.093 3.907 15 C 0.095 3.905 16 N -0.849 5.849 17 C -0.117 4.117 18 C -0.179 4.179 19 C -0.162 4.162 20 H 0.037 0.963 21 H 0.062 0.938 22 H 0.036 0.964 23 H 0.258 0.742 24 H 0.026 0.974 25 H 0.050 0.950 26 H 0.065 0.935 27 H 0.027 0.973 28 H 0.082 0.918 29 H 0.342 0.658 30 H 0.346 0.654 31 H 0.093 0.907 32 H 0.040 0.960 33 H 0.095 0.905 34 H 0.067 0.933 35 H 0.063 0.937 36 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.101 -2.328 11.703 11.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.097 3.903 3 H 0.058 0.942 4 C -0.547 4.547 5 H 0.067 0.933 6 C -0.187 4.187 7 N -0.562 5.562 8 Si 0.777 3.223 9 H -0.205 1.205 10 H -0.213 1.213 11 H -0.196 1.196 12 N -0.234 5.234 13 C -0.112 4.112 14 C 0.001 3.999 15 C -0.037 4.037 16 N -0.380 5.380 17 C -0.155 4.155 18 C -0.216 4.216 19 C -0.201 4.201 20 H 0.056 0.944 21 H 0.080 0.920 22 H 0.055 0.945 23 H 0.067 0.933 24 H 0.044 0.956 25 H 0.068 0.932 26 H 0.083 0.917 27 H 0.045 0.955 28 H 0.100 0.900 29 H 0.155 0.845 30 H 0.159 0.841 31 H 0.112 0.888 32 H 0.058 0.942 33 H 0.113 0.887 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 0.466 -1.622 11.228 11.354 hybrid contribution -1.038 -0.933 -0.834 1.626 sum -0.571 -2.555 10.394 10.719 Atomic orbital electron populations 1.22898 1.00682 0.99287 1.00820 1.19395 0.89547 0.94744 0.86566 0.94202 1.21469 1.34099 1.07598 0.91526 0.93310 1.25594 0.95922 0.95668 1.01521 1.70058 1.45298 1.16933 1.23909 0.85665 0.78340 0.78589 0.79741 1.20511 1.21250 1.19582 1.62137 1.52798 1.06102 1.02388 1.22227 0.95508 0.93044 1.00384 1.22281 0.94059 0.92130 0.91398 1.21587 0.89185 0.98441 0.94484 1.58452 1.16187 1.46807 1.16545 1.22939 0.95795 0.96076 1.00672 1.23765 0.97316 0.98701 1.01831 1.23679 0.98445 0.98036 0.99976 0.94441 0.91999 0.94542 0.93284 0.95601 0.93154 0.91664 0.95458 0.89980 0.84466 0.84060 0.88817 0.94160 0.88690 0.91409 0.91871 0.88311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -8.35 6.90 71.98 0.50 -7.85 16 2 C 0.20 10.08 1.52 44.17 0.07 10.14 16 3 H 0.04 2.20 4.12 -2.39 -0.01 2.19 16 4 C -0.51 -28.28 8.09 25.60 0.21 -28.07 16 5 H 0.05 2.75 7.78 -2.91 -0.02 2.73 16 6 C 0.01 0.61 5.16 84.66 0.44 1.05 16 7 N -0.92 -53.80 12.03 21.45 0.26 -53.54 16 8 Si 0.95 44.80 29.54 68.60 2.03 46.83 16 9 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 10 H -0.29 -13.35 7.11 99.48 0.71 -12.65 16 11 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 12 N -0.51 -20.96 3.94 -848.92 -3.35 -24.31 16 13 C 0.04 1.33 7.82 127.69 1.00 2.33 16 14 C 0.09 3.17 0.86 4.06 0.00 3.18 16 15 C 0.09 2.61 5.83 86.31 0.50 3.11 16 16 N -0.85 -23.99 9.56 -186.72 -1.79 -25.78 16 17 C -0.12 -4.28 6.81 31.18 0.21 -4.07 16 18 C -0.18 -6.52 6.60 31.18 0.21 -6.31 16 19 C -0.16 -5.09 6.38 31.12 0.20 -4.89 16 20 H 0.04 1.65 5.71 -2.38 -0.01 1.64 16 21 H 0.06 2.62 3.62 -2.39 -0.01 2.61 16 22 H 0.04 1.93 6.58 -2.39 -0.02 1.91 16 23 H 0.26 14.44 8.31 -92.70 -0.77 13.67 16 24 H 0.03 0.90 5.10 -2.39 -0.01 0.89 16 25 H 0.05 2.02 7.43 -2.39 -0.02 2.00 16 26 H 0.06 2.00 7.27 -2.39 -0.02 1.99 16 27 H 0.03 0.70 7.45 -2.38 -0.02 0.68 16 28 H 0.08 1.98 8.00 -2.39 -0.02 1.96 16 29 H 0.34 7.48 9.08 -89.69 -0.81 6.67 16 30 H 0.35 10.78 8.40 -89.69 -0.75 10.03 16 31 H 0.09 2.90 8.00 -2.39 -0.02 2.89 16 32 H 0.04 1.78 6.96 -2.38 -0.02 1.76 16 33 H 0.10 4.21 3.34 -2.39 -0.01 4.21 16 34 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 35 H 0.06 2.10 4.78 -2.39 -0.01 2.09 16 36 H 0.10 2.52 8.10 -2.39 -0.02 2.50 16 Total: -1.00 -60.28 260.52 0.02 -60.26 By element: Atomic # 1 Polarization: 28.40 SS G_CDS: -0.47 Total: 27.93 kcal Atomic # 6 Polarization: -34.73 SS G_CDS: 3.33 Total: -31.40 kcal Atomic # 7 Polarization: -98.75 SS G_CDS: -4.87 Total: -103.62 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Total: -60.28 0.02 -60.26 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385338853.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.511 kcal (2) G-P(sol) polarization free energy of solvation -60.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.259 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds