Wall clock time and date at job start Mon Mar 30 2020 03:09:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.46570 * 2 1 4 4 N 1.46893 * 109.47183 * 119.99657 * 2 1 3 5 5 C 1.46894 * 111.00298 * 275.00319 * 4 2 1 6 6 C 1.50701 * 109.47151 * 180.02562 * 5 4 2 7 7 H 1.08005 * 119.99961 * 0.02562 * 6 5 4 8 8 C 1.37874 * 120.00253 * 179.97438 * 6 5 4 9 9 N 1.31512 * 120.00607 * 179.97438 * 8 6 5 10 10 Si 1.86801 * 119.99987 * 0.02562 * 8 6 5 11 11 H 1.48501 * 109.47065 * 89.99678 * 10 8 6 12 12 H 1.48504 * 109.47361 * 209.99744 * 10 8 6 13 13 H 1.48502 * 109.46994 * 329.99743 * 10 8 6 14 14 C 1.52999 * 109.46928 * 240.00102 * 2 1 3 15 15 H 1.08996 * 109.45370 * 304.96744 * 14 2 1 16 16 C 1.53040 * 109.46428 * 64.94574 * 14 2 1 17 17 C 1.53119 * 109.28089 * 179.19281 * 16 14 2 18 18 C 1.53124 * 109.15841 * 302.34776 * 17 16 14 19 19 C 1.53032 * 109.28012 * 57.65244 * 18 17 16 20 20 N 1.46846 * 109.52260 * 300.82015 * 19 18 17 21 21 H 1.09005 * 109.46463 * 180.02562 * 1 2 3 22 22 H 1.08995 * 109.47194 * 299.99466 * 1 2 3 23 23 H 1.08996 * 109.47460 * 59.99986 * 1 2 3 24 24 H 1.00904 * 110.99797 * 38.95931 * 4 2 1 25 25 H 1.08996 * 109.47278 * 299.99858 * 5 4 2 26 26 H 1.08997 * 109.47031 * 60.00069 * 5 4 2 27 27 H 0.96998 * 120.00696 * 179.97438 * 9 8 6 28 28 H 1.09004 * 109.50602 * 59.25040 * 16 14 2 29 29 H 1.08998 * 109.50366 * 299.13560 * 16 14 2 30 30 H 1.08998 * 109.52394 * 182.44064 * 17 16 14 31 31 H 1.09003 * 109.56984 * 62.28008 * 17 16 14 32 32 H 1.08999 * 109.49853 * 297.70868 * 18 17 16 33 33 H 1.08994 * 109.53481 * 177.61659 * 18 17 16 34 34 H 1.09001 * 109.46314 * 180.80749 * 19 18 17 35 35 H 1.08999 * 109.45415 * 60.83229 * 19 18 17 36 36 H 1.00904 * 111.00089 * 185.84316 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6924 1.1994 5 6 2.0825 0.2227 2.3468 6 6 2.5885 -0.5214 3.5557 7 1 2.8390 -1.5693 3.4791 8 6 2.7329 0.1356 4.7592 9 7 3.1741 -0.5138 5.8142 10 14 2.3005 1.9481 4.8915 11 1 0.8713 2.0897 5.2691 12 1 3.1518 2.5857 5.9279 13 1 2.5346 2.6096 3.5828 14 6 2.0400 -0.7212 -1.2493 15 1 1.6057 -1.7199 -1.2946 16 6 1.6339 0.0686 -2.4956 17 6 2.1635 -0.6461 -3.7419 18 6 3.6844 -0.7858 -3.6328 19 6 4.0311 -1.5508 -2.3536 20 7 3.5035 -0.8264 -1.1903 21 1 -0.3632 -1.0278 0.0005 22 1 -0.3633 0.5137 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 1.4496 -1.4979 1.4100 25 1 2.7588 1.0462 2.1182 26 1 1.0871 0.6163 2.5524 27 1 3.2760 -0.0515 6.6608 28 1 2.0565 1.0721 -2.4443 29 1 0.5470 0.1331 -2.5474 30 1 1.9138 -0.0642 -4.6292 31 1 1.7112 -1.6351 -3.8156 32 1 4.1393 0.2042 -3.5995 33 1 4.0632 -1.3313 -4.4971 34 1 5.1139 -1.6396 -2.2656 35 1 3.5873 -2.5456 -2.3939 36 1 3.8005 -1.2602 -0.3290 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000386497754.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:50 Heat of formation + Delta-G solvation = -16.154302 kcal Electronic energy + Delta-G solvation = -14606.638069 eV Core-core repulsion = 12317.624640 eV Total energy + Delta-G solvation = -2289.013429 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.85466 -35.87340 -32.81814 -31.78194 -31.11371 -28.69202 -26.42552 -23.70033 -23.10264 -21.22619 -20.20750 -19.48194 -16.83655 -16.20243 -14.97947 -14.43819 -14.36248 -14.06121 -13.75954 -13.41688 -13.16310 -12.93025 -12.57706 -12.44860 -11.99030 -11.69105 -11.35907 -11.18083 -10.73811 -10.72509 -10.67375 -10.57641 -10.18727 -9.99073 -9.65764 -9.23796 -8.58281 -8.02209 -7.43645 -6.04127 -4.01645 3.29983 3.37802 3.41528 4.44117 4.48011 4.79663 4.95344 5.00321 5.20572 5.29260 5.40993 5.45143 5.55377 5.62704 5.70270 5.80511 5.83227 5.86219 6.00528 6.03330 6.09770 6.17720 6.31393 6.36265 6.40615 6.58595 6.84515 7.07904 7.47955 7.65322 7.92664 7.93851 8.36827 8.67168 9.03590 9.58352 11.09245 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.046367 B = 0.006961 C = 0.006554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.736188 B = 4021.585504 C = 4270.874625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.083 3.917 3 H 0.077 0.923 4 N -0.674 5.674 5 C 0.167 3.833 6 C -0.514 4.514 7 H 0.078 0.922 8 C 0.068 3.932 9 N -0.902 5.902 10 Si 0.878 3.122 11 H -0.279 1.279 12 H -0.286 1.286 13 H -0.266 1.266 14 C 0.105 3.895 15 H 0.029 0.971 16 C -0.115 4.115 17 C -0.119 4.119 18 C -0.117 4.117 19 C 0.058 3.942 20 N -0.680 5.680 21 H 0.052 0.948 22 H 0.056 0.944 23 H 0.055 0.945 24 H 0.332 0.668 25 H 0.028 0.972 26 H -0.021 1.021 27 H 0.263 0.737 28 H 0.068 0.932 29 H 0.062 0.938 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.068 0.932 33 H 0.058 0.942 34 H 0.069 0.931 35 H 0.022 0.978 36 H 0.364 0.636 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.208 0.505 -17.199 17.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.028 4.028 3 H 0.095 0.905 4 N -0.303 5.303 5 C 0.039 3.961 6 C -0.553 4.553 7 H 0.096 0.904 8 C -0.133 4.133 9 N -0.541 5.541 10 Si 0.705 3.295 11 H -0.205 1.205 12 H -0.212 1.212 13 H -0.191 1.191 14 C -0.006 4.006 15 H 0.047 0.953 16 C -0.153 4.153 17 C -0.157 4.157 18 C -0.155 4.155 19 C -0.072 4.072 20 N -0.314 5.314 21 H 0.071 0.929 22 H 0.076 0.924 23 H 0.074 0.926 24 H 0.149 0.851 25 H 0.046 0.954 26 H -0.004 1.004 27 H 0.073 0.927 28 H 0.087 0.913 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.086 0.914 33 H 0.077 0.923 34 H 0.088 0.912 35 H 0.040 0.960 36 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -2.367 1.224 -17.413 17.616 hybrid contribution -1.448 0.134 0.689 1.609 sum -3.815 1.357 -16.724 17.208 Atomic orbital electron populations 1.22544 0.98060 1.01661 1.01770 1.21613 0.91501 0.98648 0.91042 0.90454 1.60459 1.55515 1.10141 1.04235 1.19994 0.94288 0.92911 0.88867 1.21073 1.43498 0.98762 0.91938 0.90410 1.24899 0.94832 0.97950 0.95659 1.69897 1.46770 1.36525 1.00885 0.86824 0.78436 0.86068 0.78176 1.20465 1.21201 1.19077 1.21358 0.88441 0.96854 0.93904 0.95267 1.21686 0.99877 0.99908 0.93824 1.21554 0.96071 1.00227 0.97812 1.21588 0.95944 1.01161 0.96818 1.21869 0.99474 0.94392 0.91481 1.60162 1.09409 1.56397 1.05468 0.92869 0.92445 0.92630 0.85057 0.95443 1.00383 0.92699 0.91324 0.91892 0.92345 0.92642 0.91352 0.92333 0.91244 0.96007 0.81346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.65 8.92 37.16 0.33 -2.32 16 2 C 0.08 1.39 2.36 -67.71 -0.16 1.23 16 3 H 0.08 1.41 7.80 -51.93 -0.40 1.01 16 4 N -0.67 -13.58 5.27 -108.00 -0.57 -14.15 16 5 C 0.17 4.05 4.31 -4.98 -0.02 4.03 16 6 C -0.51 -14.71 9.87 -34.44 -0.34 -15.05 16 7 H 0.08 2.40 8.06 -52.48 -0.42 1.98 16 8 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 9 N -0.90 -27.88 13.96 55.43 0.77 -27.11 16 10 Si 0.88 21.84 27.47 -169.99 -4.67 17.18 16 11 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 13 H -0.27 -6.43 6.54 56.52 0.37 -6.06 16 14 C 0.11 1.55 2.26 -67.72 -0.15 1.39 16 15 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 16 C -0.11 -1.43 5.11 -26.65 -0.14 -1.57 16 17 C -0.12 -1.30 6.00 -26.61 -0.16 -1.46 16 18 C -0.12 -1.31 6.09 -26.65 -0.16 -1.48 16 19 C 0.06 0.74 6.55 -3.84 -0.03 0.72 16 20 N -0.68 -10.53 6.50 -106.77 -0.69 -11.23 16 21 H 0.05 0.74 8.13 -51.93 -0.42 0.31 16 22 H 0.06 0.91 7.45 -51.93 -0.39 0.52 16 23 H 0.05 0.69 6.58 -51.93 -0.34 0.35 16 24 H 0.33 6.58 8.46 -39.29 -0.33 6.24 16 25 H 0.03 0.70 7.11 -51.93 -0.37 0.33 16 26 H -0.02 -0.52 6.86 -51.93 -0.36 -0.87 16 27 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 28 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 29 H 0.06 0.71 6.61 -51.93 -0.34 0.37 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.02 0.28 8.14 -51.93 -0.42 -0.15 16 36 H 0.36 6.30 7.90 -39.29 -0.31 5.99 16 LS Contribution 279.29 15.07 4.21 4.21 Total: -1.00 -29.60 279.29 -8.11 -37.71 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: -6.24 Total: 5.99 kcal Atomic # 6 Polarization: -11.68 SS G_CDS: -0.92 Total: -12.60 kcal Atomic # 7 Polarization: -52.00 SS G_CDS: -0.49 Total: -52.49 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.67 Total: 17.18 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -29.60 -8.11 -37.71 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000386497754.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.557 kcal (2) G-P(sol) polarization free energy of solvation -29.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds