Wall clock time and date at job start Mon Mar 30 2020 03:09:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.46570 * 2 1 4 4 N 1.46893 * 109.47183 * 119.99657 * 2 1 3 5 5 C 1.46894 * 111.00298 * 275.00319 * 4 2 1 6 6 C 1.50701 * 109.47151 * 180.02562 * 5 4 2 7 7 H 1.08005 * 119.99961 * 0.02562 * 6 5 4 8 8 C 1.37874 * 120.00253 * 179.97438 * 6 5 4 9 9 N 1.31512 * 120.00607 * 179.97438 * 8 6 5 10 10 Si 1.86801 * 119.99987 * 0.02562 * 8 6 5 11 11 H 1.48501 * 109.47065 * 89.99678 * 10 8 6 12 12 H 1.48504 * 109.47361 * 209.99744 * 10 8 6 13 13 H 1.48502 * 109.46994 * 329.99743 * 10 8 6 14 14 C 1.52999 * 109.46928 * 240.00102 * 2 1 3 15 15 H 1.08996 * 109.45370 * 304.96744 * 14 2 1 16 16 C 1.53040 * 109.46428 * 64.94574 * 14 2 1 17 17 C 1.53119 * 109.28089 * 179.19281 * 16 14 2 18 18 C 1.53124 * 109.15841 * 302.34776 * 17 16 14 19 19 C 1.53032 * 109.28012 * 57.65244 * 18 17 16 20 20 N 1.46846 * 109.52260 * 300.82015 * 19 18 17 21 21 H 1.09005 * 109.46463 * 180.02562 * 1 2 3 22 22 H 1.08995 * 109.47194 * 299.99466 * 1 2 3 23 23 H 1.08996 * 109.47460 * 59.99986 * 1 2 3 24 24 H 1.00904 * 110.99797 * 38.95931 * 4 2 1 25 25 H 1.08996 * 109.47278 * 299.99858 * 5 4 2 26 26 H 1.08997 * 109.47031 * 60.00069 * 5 4 2 27 27 H 0.96998 * 120.00696 * 179.97438 * 9 8 6 28 28 H 1.09004 * 109.50602 * 59.25040 * 16 14 2 29 29 H 1.08998 * 109.50366 * 299.13560 * 16 14 2 30 30 H 1.08998 * 109.52394 * 182.44064 * 17 16 14 31 31 H 1.09003 * 109.56984 * 62.28008 * 17 16 14 32 32 H 1.08999 * 109.49853 * 297.70868 * 18 17 16 33 33 H 1.08994 * 109.53481 * 177.61659 * 18 17 16 34 34 H 1.09001 * 109.46314 * 180.80749 * 19 18 17 35 35 H 1.08999 * 109.45415 * 60.83229 * 19 18 17 36 36 H 1.00904 * 111.00089 * 185.84316 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6924 1.1994 5 6 2.0825 0.2227 2.3468 6 6 2.5885 -0.5214 3.5557 7 1 2.8390 -1.5693 3.4791 8 6 2.7329 0.1356 4.7592 9 7 3.1741 -0.5138 5.8142 10 14 2.3005 1.9481 4.8915 11 1 0.8713 2.0897 5.2691 12 1 3.1518 2.5857 5.9279 13 1 2.5346 2.6096 3.5828 14 6 2.0400 -0.7212 -1.2493 15 1 1.6057 -1.7199 -1.2946 16 6 1.6339 0.0686 -2.4956 17 6 2.1635 -0.6461 -3.7419 18 6 3.6844 -0.7858 -3.6328 19 6 4.0311 -1.5508 -2.3536 20 7 3.5035 -0.8264 -1.1903 21 1 -0.3632 -1.0278 0.0005 22 1 -0.3633 0.5137 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 1.4496 -1.4979 1.4100 25 1 2.7588 1.0462 2.1182 26 1 1.0871 0.6163 2.5524 27 1 3.2760 -0.0515 6.6608 28 1 2.0565 1.0721 -2.4443 29 1 0.5470 0.1331 -2.5474 30 1 1.9138 -0.0642 -4.6292 31 1 1.7112 -1.6351 -3.8156 32 1 4.1393 0.2042 -3.5995 33 1 4.0632 -1.3313 -4.4971 34 1 5.1139 -1.6396 -2.2656 35 1 3.5873 -2.5456 -2.3939 36 1 3.8005 -1.2602 -0.3290 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000386497754.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:50 Heat of formation + Delta-G solvation = -37.859615 kcal Electronic energy + Delta-G solvation = -14607.579282 eV Core-core repulsion = 12317.624640 eV Total energy + Delta-G solvation = -2289.954642 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.00736 -37.31398 -34.84371 -32.82281 -32.69290 -30.00690 -28.21931 -24.90881 -24.19634 -23.09357 -21.50476 -20.52692 -18.92524 -17.45383 -16.56411 -15.98777 -15.77421 -15.37586 -15.13356 -14.73674 -14.43222 -14.32060 -13.92932 -13.63364 -13.54651 -13.36722 -12.72934 -12.58602 -12.31629 -12.18806 -11.81603 -11.78098 -11.61383 -11.54441 -11.18345 -10.96596 -10.81268 -9.24811 -9.01625 -8.29818 -6.33374 1.33392 1.36252 1.47486 2.33998 3.04629 3.32523 3.47037 3.94771 4.05926 4.17130 4.21122 4.36190 4.43356 4.48958 4.58415 4.75271 4.79803 4.81635 4.86141 4.94174 5.03808 5.07352 5.15023 5.19478 5.26799 5.29396 5.37326 5.53953 5.54831 5.98346 6.36655 6.57356 6.63706 6.69607 6.80514 7.31720 8.86937 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.046367 B = 0.006961 C = 0.006554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.736188 B = 4021.585504 C = 4270.874625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.083 3.917 3 H 0.063 0.937 4 N -0.679 5.679 5 C 0.182 3.818 6 C -0.524 4.524 7 H 0.038 0.962 8 C 0.008 3.992 9 N -0.948 5.948 10 Si 0.949 3.051 11 H -0.266 1.266 12 H -0.281 1.281 13 H -0.253 1.253 14 C 0.109 3.891 15 H 0.028 0.972 16 C -0.111 4.111 17 C -0.117 4.117 18 C -0.114 4.114 19 C 0.054 3.946 20 N -0.695 5.695 21 H 0.060 0.940 22 H 0.043 0.957 23 H 0.082 0.918 24 H 0.333 0.667 25 H 0.019 0.981 26 H -0.016 1.016 27 H 0.267 0.733 28 H 0.060 0.940 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.079 0.921 34 H 0.072 0.928 35 H 0.023 0.977 36 H 0.349 0.651 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.294 1.749 -19.250 19.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.027 4.027 3 H 0.081 0.919 4 N -0.308 5.308 5 C 0.053 3.947 6 C -0.562 4.562 7 H 0.056 0.944 8 C -0.189 4.189 9 N -0.589 5.589 10 Si 0.773 3.227 11 H -0.191 1.191 12 H -0.207 1.207 13 H -0.177 1.177 14 C -0.001 4.001 15 H 0.046 0.954 16 C -0.150 4.150 17 C -0.154 4.154 18 C -0.152 4.152 19 C -0.075 4.075 20 N -0.328 5.328 21 H 0.079 0.921 22 H 0.062 0.938 23 H 0.101 0.899 24 H 0.150 0.850 25 H 0.038 0.962 26 H 0.002 0.998 27 H 0.076 0.924 28 H 0.079 0.921 29 H 0.097 0.903 30 H 0.096 0.904 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.098 0.902 34 H 0.090 0.910 35 H 0.042 0.958 36 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -3.465 2.463 -19.507 19.964 hybrid contribution -1.064 -0.360 1.298 1.717 sum -4.529 2.102 -18.209 18.881 Atomic orbital electron populations 1.22456 0.96050 1.02414 1.02419 1.21696 0.93158 0.97682 0.90211 0.91910 1.60340 1.56617 1.09814 1.04049 1.19677 0.93803 0.92633 0.88575 1.21353 1.43390 0.97488 0.94007 0.94352 1.25845 0.94654 1.03261 0.95143 1.70047 1.48286 1.38838 1.01686 0.85686 0.78702 0.79610 0.78735 1.19121 1.20661 1.17700 1.21353 0.88002 0.96851 0.93924 0.95438 1.21679 1.00888 0.99144 0.93246 1.21558 0.95567 1.00627 0.97659 1.21588 0.96423 1.00745 0.96470 1.21980 0.99615 0.94545 0.91358 1.60232 1.10026 1.56922 1.05631 0.92076 0.93806 0.89928 0.84963 0.96249 0.99847 0.92413 0.92108 0.90292 0.90391 0.92141 0.92070 0.90222 0.90999 0.95848 0.83110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.71 8.92 71.98 0.64 -4.07 16 2 C 0.08 2.68 2.36 44.92 0.11 2.79 16 3 H 0.06 2.22 7.80 -2.39 -0.02 2.20 16 4 N -0.68 -27.41 5.27 -495.61 -2.61 -30.02 16 5 C 0.18 8.79 4.31 85.56 0.37 9.16 16 6 C -0.52 -30.68 9.87 25.60 0.25 -30.43 16 7 H 0.04 2.48 8.06 -2.91 -0.02 2.45 16 8 C 0.01 0.49 5.47 84.65 0.46 0.96 16 9 N -0.95 -59.90 13.96 21.45 0.30 -59.60 16 10 Si 0.95 44.92 27.47 68.60 1.88 46.80 16 11 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 12 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 13 H -0.25 -11.36 6.54 99.48 0.65 -10.71 16 14 C 0.11 3.05 2.26 44.94 0.10 3.16 16 15 H 0.03 0.79 8.14 -2.39 -0.02 0.77 16 16 C -0.11 -2.48 5.11 30.65 0.16 -2.32 16 17 C -0.12 -2.18 6.00 30.68 0.18 -1.99 16 18 C -0.11 -2.28 6.09 30.65 0.19 -2.10 16 19 C 0.05 1.32 6.55 86.32 0.57 1.89 16 20 N -0.69 -21.14 6.50 -491.70 -3.20 -24.33 16 21 H 0.06 1.56 8.13 -2.38 -0.02 1.54 16 22 H 0.04 1.30 7.45 -2.39 -0.02 1.29 16 23 H 0.08 1.79 6.58 -2.39 -0.02 1.77 16 24 H 0.33 13.30 8.46 -89.69 -0.76 12.54 16 25 H 0.02 0.97 7.11 -2.39 -0.02 0.96 16 26 H -0.02 -0.76 6.86 -2.39 -0.02 -0.78 16 27 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 28 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.08 1.50 6.61 -2.39 -0.02 1.49 16 30 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.02 0.56 8.14 -2.39 -0.02 0.54 16 36 H 0.35 12.22 7.90 -89.69 -0.71 11.51 16 Total: -1.00 -64.24 279.29 -1.07 -65.32 By element: Atomic # 1 Polarization: 25.27 SS G_CDS: -0.47 Total: 24.79 kcal Atomic # 6 Polarization: -25.99 SS G_CDS: 3.03 Total: -22.96 kcal Atomic # 7 Polarization: -108.45 SS G_CDS: -5.51 Total: -113.96 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 1.88 Total: 46.80 kcal Total: -64.24 -1.07 -65.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000386497754.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.456 kcal (2) G-P(sol) polarization free energy of solvation -64.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds