Wall clock time and date at job start Mon Mar 30 2020 03:09:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09002 * 109.47331 * 2 1 4 4 N 1.46902 * 109.47520 * 239.99834 * 2 1 3 5 5 C 1.46900 * 110.99955 * 84.99843 * 4 2 1 6 6 C 1.50696 * 109.47217 * 180.02562 * 5 4 2 7 7 H 1.07999 * 120.00114 * 0.02562 * 6 5 4 8 8 C 1.37873 * 120.00302 * 179.97438 * 6 5 4 9 9 N 1.31521 * 119.99957 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 120.00280 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47116 * 90.00539 * 10 8 6 12 12 H 1.48503 * 109.47228 * 210.00269 * 10 8 6 13 13 H 1.48494 * 109.47021 * 330.00086 * 10 8 6 14 14 C 1.52996 * 109.46999 * 119.99921 * 2 1 3 15 15 H 1.09008 * 109.45849 * 55.02631 * 14 2 1 16 16 C 1.53039 * 109.46366 * 295.05280 * 14 2 1 17 17 C 1.53126 * 109.28009 * 180.80213 * 16 14 2 18 18 C 1.53099 * 109.15071 * 57.65227 * 17 16 14 19 19 C 1.53034 * 109.29509 * 302.33888 * 18 17 16 20 20 N 1.46847 * 109.51345 * 59.18740 * 19 18 17 21 21 H 1.09002 * 109.47336 * 300.00146 * 1 2 3 22 22 H 1.09009 * 109.46767 * 59.99947 * 1 2 3 23 23 H 1.09002 * 109.47331 * 179.97438 * 1 2 3 24 24 H 1.00906 * 110.99595 * 321.05289 * 4 2 1 25 25 H 1.09004 * 109.47375 * 300.00608 * 5 4 2 26 26 H 1.09001 * 109.46868 * 60.00352 * 5 4 2 27 27 H 0.97003 * 120.00189 * 179.97438 * 9 8 6 28 28 H 1.08994 * 109.50227 * 300.74039 * 16 14 2 29 29 H 1.09000 * 109.50337 * 60.86263 * 16 14 2 30 30 H 1.08990 * 109.52264 * 177.55890 * 17 16 14 31 31 H 1.09001 * 109.52183 * 297.75176 * 17 16 14 32 32 H 1.09007 * 109.48839 * 182.39531 * 18 17 16 33 33 H 1.09009 * 109.50682 * 62.29317 * 18 17 16 34 34 H 1.09002 * 109.46271 * 299.17460 * 19 18 17 35 35 H 1.08994 * 109.46242 * 179.19760 * 19 18 17 36 36 H 1.00899 * 111.00257 * 174.16817 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1994 5 6 2.0825 0.2225 -2.3469 6 6 2.5874 -0.5218 -3.5559 7 1 2.8364 -1.5700 -3.4797 8 6 2.7306 0.1349 -4.7597 9 7 2.4270 1.4112 -4.8528 10 14 3.3559 -0.7880 -6.2587 11 1 2.2062 -1.3702 -6.9966 12 1 4.0903 0.1490 -7.1462 13 1 4.2681 -1.8765 -5.8248 14 6 2.0399 -0.7212 1.2492 15 1 1.6055 -1.7200 1.2947 16 6 1.6338 0.0686 2.4955 17 6 2.1633 -0.6461 3.7419 18 6 3.6840 -0.7859 3.6327 19 6 4.0309 -1.5510 2.3536 20 7 3.5035 -0.8266 1.1903 21 1 -0.3634 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8901 23 1 -0.3634 -1.0277 -0.0005 24 1 1.4495 -1.4979 -1.4100 25 1 1.0871 0.6163 -2.5525 26 1 2.7589 1.0461 -2.1182 27 1 2.5280 1.8733 -5.6996 28 1 2.0565 1.0719 2.4443 29 1 0.5469 0.1332 2.5473 30 1 1.9137 -0.0643 4.6291 31 1 1.7109 -1.6351 3.8145 32 1 4.0621 -1.3317 4.4972 33 1 4.1391 0.2041 3.5993 34 1 3.5872 -2.5458 2.3938 35 1 5.1137 -1.6397 2.2658 36 1 3.8003 -1.2604 0.3290 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000386497758.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:53 Heat of formation + Delta-G solvation = -20.320665 kcal Electronic energy + Delta-G solvation = -14556.785926 eV Core-core repulsion = 12267.591830 eV Total energy + Delta-G solvation = -2289.194096 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.77146 -35.71905 -32.85789 -31.72786 -30.87524 -28.46456 -25.98347 -23.64947 -23.08659 -21.54774 -20.06123 -19.43533 -16.60186 -15.94582 -14.90045 -14.51274 -14.17773 -14.08407 -13.70537 -13.32330 -13.06675 -12.84445 -12.49930 -12.08663 -11.87405 -11.27262 -11.25362 -11.08200 -10.75684 -10.68291 -10.66018 -10.49900 -10.16390 -10.11838 -9.69130 -9.09954 -8.45949 -7.95682 -7.23217 -6.00023 -4.01757 3.33266 3.39474 3.43839 4.45047 4.54543 4.91310 5.01045 5.05955 5.29496 5.35929 5.50624 5.53150 5.65271 5.69102 5.81409 5.87337 5.90800 5.94540 6.05885 6.09697 6.18190 6.23860 6.43914 6.45440 6.52709 6.70607 7.31713 7.49464 7.56389 7.81861 7.99218 8.17770 8.43801 8.66149 9.07609 9.62941 11.10988 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.048586 B = 0.006499 C = 0.006023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 576.155930 B = 4307.249857 C = 4648.081689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.086 3.914 3 H 0.078 0.922 4 N -0.684 5.684 5 C 0.197 3.803 6 C -0.513 4.513 7 H 0.061 0.939 8 C 0.056 3.944 9 N -0.898 5.898 10 Si 0.898 3.102 11 H -0.282 1.282 12 H -0.287 1.287 13 H -0.273 1.273 14 C 0.105 3.895 15 H 0.027 0.973 16 C -0.115 4.115 17 C -0.119 4.119 18 C -0.117 4.117 19 C 0.058 3.942 20 N -0.679 5.679 21 H 0.053 0.947 22 H 0.058 0.942 23 H 0.049 0.951 24 H 0.325 0.675 25 H -0.014 1.014 26 H 0.029 0.971 27 H 0.261 0.739 28 H 0.068 0.932 29 H 0.062 0.938 30 H 0.058 0.942 31 H 0.054 0.946 32 H 0.057 0.943 33 H 0.068 0.932 34 H 0.021 0.979 35 H 0.068 0.932 36 H 0.363 0.637 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.323 -4.188 14.538 15.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.025 4.025 3 H 0.096 0.904 4 N -0.313 5.313 5 C 0.071 3.929 6 C -0.552 4.552 7 H 0.079 0.921 8 C -0.146 4.146 9 N -0.537 5.537 10 Si 0.726 3.274 11 H -0.208 1.208 12 H -0.213 1.213 13 H -0.198 1.198 14 C -0.005 4.005 15 H 0.045 0.955 16 C -0.153 4.153 17 C -0.157 4.157 18 C -0.155 4.155 19 C -0.072 4.072 20 N -0.313 5.313 21 H 0.072 0.928 22 H 0.077 0.923 23 H 0.068 0.932 24 H 0.141 0.859 25 H 0.003 0.997 26 H 0.047 0.953 27 H 0.070 0.930 28 H 0.087 0.913 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.087 0.913 34 H 0.039 0.961 35 H 0.087 0.913 36 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -0.528 -3.337 14.817 15.197 hybrid contribution -0.935 -1.189 -1.337 2.018 sum -1.462 -4.526 13.480 14.294 Atomic orbital electron populations 1.22526 0.98197 1.01342 1.01794 1.21557 0.91384 0.98670 0.90927 0.90424 1.60643 1.55057 1.10562 1.05048 1.19540 0.95194 0.91784 0.86411 1.21192 1.43486 0.96815 0.93677 0.92117 1.24982 0.95705 0.94902 0.98978 1.69967 1.48978 1.08975 1.25811 0.86504 0.78848 0.79547 0.82518 1.20833 1.21275 1.19826 1.21375 0.88281 0.96748 0.94130 0.95485 1.21688 0.99884 0.99957 0.93788 1.21553 0.96039 1.00186 0.97887 1.21587 0.95993 1.01165 0.96760 1.21867 0.99386 0.94349 0.91602 1.60155 1.09564 1.56286 1.05322 0.92835 0.92266 0.93190 0.85856 0.99651 0.95302 0.92971 0.91280 0.91902 0.92360 0.92711 0.92402 0.91317 0.96128 0.91339 0.81457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.83 8.92 37.15 0.33 -2.50 16 2 C 0.09 1.53 2.36 -67.72 -0.16 1.37 16 3 H 0.08 1.54 7.80 -51.93 -0.40 1.13 16 4 N -0.68 -14.35 5.27 -108.00 -0.57 -14.92 16 5 C 0.20 5.16 5.24 -4.98 -0.03 5.13 16 6 C -0.51 -14.53 9.32 -34.44 -0.32 -14.85 16 7 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 8 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 9 N -0.90 -27.05 13.29 55.43 0.74 -26.31 16 10 Si 0.90 21.82 29.54 -169.99 -5.02 16.80 16 11 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 13 H -0.27 -6.54 7.11 56.52 0.40 -6.13 16 14 C 0.11 1.62 2.25 -67.72 -0.15 1.47 16 15 H 0.03 0.43 8.14 -51.92 -0.42 0.00 16 16 C -0.11 -1.51 5.11 -26.65 -0.14 -1.65 16 17 C -0.12 -1.36 6.00 -26.62 -0.16 -1.52 16 18 C -0.12 -1.36 6.09 -26.66 -0.16 -1.52 16 19 C 0.06 0.76 6.55 -3.84 -0.03 0.74 16 20 N -0.68 -10.88 6.50 -106.76 -0.69 -11.57 16 21 H 0.05 0.73 6.58 -51.93 -0.34 0.39 16 22 H 0.06 1.04 7.45 -51.92 -0.39 0.65 16 23 H 0.05 0.74 8.13 -51.93 -0.42 0.32 16 24 H 0.33 6.62 8.46 -39.29 -0.33 6.29 16 25 H -0.01 -0.40 7.44 -51.93 -0.39 -0.78 16 26 H 0.03 0.83 8.06 -51.93 -0.42 0.41 16 27 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 28 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.06 0.76 6.61 -51.93 -0.34 0.42 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.84 8.14 -51.92 -0.42 0.42 16 34 H 0.02 0.27 8.14 -51.93 -0.42 -0.16 16 35 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.36 6.42 7.90 -39.29 -0.31 6.11 16 LS Contribution 282.89 15.07 4.26 4.26 Total: -1.00 -29.08 282.89 -8.47 -37.55 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: -6.27 Total: 6.03 kcal Atomic # 6 Polarization: -10.93 SS G_CDS: -0.91 Total: -11.84 kcal Atomic # 7 Polarization: -52.28 SS G_CDS: -0.53 Total: -52.81 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -29.08 -8.47 -37.55 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000386497758.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.231 kcal (2) G-P(sol) polarization free energy of solvation -29.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds