Wall clock time and date at job start Mon Mar 30 2020 03:09:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08991 * 109.47076 * 2 1 4 4 N 1.46902 * 109.47072 * 240.00277 * 2 1 3 5 5 C 1.46893 * 111.00110 * 84.99968 * 4 2 1 6 6 C 1.50708 * 109.47161 * 179.97438 * 5 4 2 7 7 H 1.07991 * 119.99789 * 0.02562 * 6 5 4 8 8 C 1.37877 * 120.00008 * 179.97438 * 6 5 4 9 9 N 1.31514 * 120.00089 * 180.02562 * 8 6 5 10 10 Si 1.86798 * 119.99938 * 0.02562 * 8 6 5 11 11 H 1.48506 * 109.47297 * 269.99556 * 10 8 6 12 12 H 1.48503 * 109.47261 * 149.99737 * 10 8 6 13 13 H 1.48500 * 109.47454 * 29.99730 * 10 8 6 14 14 C 1.52997 * 109.46739 * 120.00352 * 2 1 3 15 15 H 1.08996 * 109.46771 * 60.00168 * 14 2 1 16 16 C 1.53045 * 109.45971 * 179.97438 * 14 2 1 17 17 C 1.53114 * 109.27716 * 179.19279 * 16 14 2 18 18 C 1.53119 * 109.16446 * 302.34596 * 17 16 14 19 19 C 1.53037 * 109.27590 * 57.65503 * 18 17 16 20 20 N 1.46843 * 109.46212 * 300.01575 * 14 2 1 21 21 H 1.09001 * 109.47393 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.47057 * 300.00054 * 1 2 3 23 23 H 1.09000 * 109.46970 * 59.99752 * 1 2 3 24 24 H 1.00910 * 110.99726 * 321.04693 * 4 2 1 25 25 H 1.08994 * 109.47623 * 60.00186 * 5 4 2 26 26 H 1.09000 * 109.47422 * 300.00155 * 5 4 2 27 27 H 0.96997 * 119.99848 * 180.02562 * 9 8 6 28 28 H 1.08992 * 109.50103 * 299.13650 * 16 14 2 29 29 H 1.09003 * 109.50060 * 59.25131 * 16 14 2 30 30 H 1.09002 * 109.52597 * 62.25584 * 17 16 14 31 31 H 1.09006 * 109.52514 * 182.37822 * 17 16 14 32 32 H 1.09001 * 109.50459 * 177.59699 * 18 17 16 33 33 H 1.09000 * 109.50233 * 297.67660 * 18 17 16 34 34 H 1.09004 * 109.46565 * 60.83793 * 19 18 17 35 35 H 1.09000 * 109.46443 * 180.81789 * 19 18 17 36 36 H 1.00898 * 111.00289 * 302.34572 * 20 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6924 -1.1995 5 6 2.0825 0.2226 -2.3469 6 6 2.5886 -0.5215 -3.5558 7 1 2.8381 -1.5694 -3.4794 8 6 2.7319 0.1354 -4.7595 9 7 3.1731 -0.5140 -5.8146 10 14 2.2996 1.9479 -4.8917 11 1 0.8700 2.0896 -5.2682 12 1 3.1501 2.5853 -5.9288 13 1 2.5348 2.6096 -3.5833 14 6 2.0399 -0.7213 1.2492 15 1 1.6766 -1.7489 1.2490 16 6 3.5704 -0.7218 1.2487 17 6 4.0761 -1.4268 2.5103 18 6 3.5122 -0.7158 3.7437 19 6 1.9835 -0.7156 3.6718 20 7 1.5500 -0.0292 2.4480 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 1.4495 -1.4979 -1.4101 25 1 2.7589 1.0462 -2.1183 26 1 1.0871 0.6164 -2.5525 27 1 3.2743 -0.0518 -6.6613 28 1 3.9338 -1.2490 0.3667 29 1 3.9346 0.3055 1.2351 30 1 3.7446 -2.4652 2.5051 31 1 5.1653 -1.3923 2.5351 32 1 3.8341 -1.2388 4.6442 33 1 3.8760 0.3113 3.7697 34 1 1.6203 -1.7432 3.6601 35 1 1.5791 -0.1973 4.5413 36 1 1.8415 0.9367 2.4525 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000386497761.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:56 Heat of formation + Delta-G solvation = -17.583798 kcal Electronic energy + Delta-G solvation = -14605.612096 eV Core-core repulsion = 12316.536680 eV Total energy + Delta-G solvation = -2289.075416 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.05418 -35.94509 -32.81668 -31.69734 -30.81569 -28.87833 -26.35905 -23.82678 -22.85058 -21.23357 -20.28595 -20.11735 -16.80558 -15.65101 -15.07387 -14.76405 -14.48747 -13.98484 -13.82616 -13.44695 -12.96359 -12.85100 -12.56597 -12.11759 -11.91116 -11.64219 -11.52780 -11.25352 -10.89136 -10.72091 -10.63954 -10.55727 -10.34740 -10.00906 -9.70900 -9.25566 -8.59426 -8.21113 -7.39031 -6.05015 -4.02539 3.28932 3.36430 3.39260 4.28222 4.42874 4.80111 4.94609 5.06156 5.19180 5.27146 5.30249 5.48166 5.52971 5.63168 5.71951 5.79059 5.87541 5.91939 6.08878 6.12167 6.17709 6.33816 6.40048 6.50979 6.54956 6.63323 6.84306 7.05817 7.23844 7.48837 7.64270 7.94150 8.38276 8.67151 9.03442 9.57392 11.08400 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.047136 B = 0.006892 C = 0.006516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 593.883936 B = 4061.662012 C = 4295.902544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.087 3.913 3 H 0.066 0.934 4 N -0.674 5.674 5 C 0.167 3.833 6 C -0.515 4.515 7 H 0.079 0.921 8 C 0.068 3.932 9 N -0.901 5.901 10 Si 0.878 3.122 11 H -0.278 1.278 12 H -0.286 1.286 13 H -0.267 1.267 14 C 0.101 3.899 15 H 0.076 0.924 16 C -0.142 4.142 17 C -0.121 4.121 18 C -0.158 4.158 19 C 0.060 3.940 20 N -0.683 5.683 21 H 0.050 0.950 22 H 0.063 0.937 23 H 0.047 0.953 24 H 0.336 0.664 25 H 0.024 0.976 26 H -0.020 1.020 27 H 0.263 0.737 28 H 0.089 0.911 29 H 0.053 0.947 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.060 0.940 33 H 0.058 0.942 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.336 0.664 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.139 1.245 17.374 17.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.025 4.025 3 H 0.084 0.916 4 N -0.304 5.304 5 C 0.039 3.961 6 C -0.553 4.553 7 H 0.097 0.903 8 C -0.134 4.134 9 N -0.540 5.540 10 Si 0.705 3.295 11 H -0.204 1.204 12 H -0.212 1.212 13 H -0.192 1.192 14 C -0.009 4.009 15 H 0.094 0.906 16 C -0.181 4.181 17 C -0.159 4.159 18 C -0.197 4.197 19 C -0.070 4.070 20 N -0.311 5.311 21 H 0.069 0.931 22 H 0.082 0.918 23 H 0.066 0.934 24 H 0.153 0.847 25 H 0.042 0.958 26 H -0.002 1.002 27 H 0.073 0.927 28 H 0.108 0.892 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -2.053 1.043 17.314 17.466 hybrid contribution -0.103 1.322 -0.430 1.394 sum -2.156 2.364 16.884 17.184 Atomic orbital electron populations 1.22365 0.97476 1.01580 1.01502 1.21478 0.92583 0.97464 0.90940 0.91584 1.60477 1.55851 1.10121 1.03922 1.19991 0.94296 0.92825 0.89001 1.21079 1.43483 0.98822 0.91900 0.90332 1.24905 0.94853 0.97942 0.95660 1.69901 1.46750 1.36513 1.00869 0.86826 0.78544 0.86045 0.78080 1.20357 1.21206 1.19212 1.21488 0.92507 0.98117 0.88772 0.90567 1.22117 0.97005 1.00786 0.98240 1.21597 0.99978 0.99488 0.94788 1.22272 0.98125 1.00805 0.98518 1.21959 0.92516 0.99816 0.92671 1.60672 1.62838 1.05954 1.01663 0.93132 0.91789 0.93388 0.84690 0.95822 1.00245 0.92688 0.89246 0.92810 0.92187 0.92419 0.92108 0.92322 0.91211 0.91274 0.84672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.63 9.00 37.16 0.33 -2.30 16 2 C 0.09 1.44 2.30 -67.71 -0.16 1.28 16 3 H 0.07 1.15 7.80 -51.93 -0.40 0.75 16 4 N -0.67 -13.64 5.49 -108.00 -0.59 -14.23 16 5 C 0.17 4.04 4.31 -4.98 -0.02 4.02 16 6 C -0.51 -14.75 9.87 -34.44 -0.34 -15.09 16 7 H 0.08 2.44 8.06 -52.49 -0.42 2.01 16 8 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 9 N -0.90 -27.87 13.96 55.43 0.77 -27.09 16 10 Si 0.88 21.79 27.47 -169.99 -4.67 17.12 16 11 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 13 H -0.27 -6.42 6.54 56.52 0.37 -6.05 16 14 C 0.10 1.44 2.19 -67.72 -0.15 1.29 16 15 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 16 C -0.14 -2.05 5.19 -26.65 -0.14 -2.19 16 17 C -0.12 -1.45 6.00 -26.61 -0.16 -1.61 16 18 C -0.16 -1.61 6.08 -26.65 -0.16 -1.78 16 19 C 0.06 0.63 6.55 -3.83 -0.03 0.60 16 20 N -0.68 -8.33 5.73 -106.76 -0.61 -8.95 16 21 H 0.05 0.76 8.13 -51.93 -0.42 0.33 16 22 H 0.06 0.91 7.60 -51.93 -0.39 0.51 16 23 H 0.05 0.80 7.45 -51.93 -0.39 0.41 16 24 H 0.34 6.72 8.46 -39.29 -0.33 6.38 16 25 H 0.02 0.59 7.11 -51.93 -0.37 0.22 16 26 H -0.02 -0.49 6.86 -51.93 -0.36 -0.84 16 27 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 28 H 0.09 1.51 7.63 -51.93 -0.40 1.12 16 29 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.34 3.94 8.79 -39.29 -0.35 3.59 16 LS Contribution 281.72 15.07 4.25 4.25 Total: -1.00 -29.44 281.72 -8.15 -37.59 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: -6.38 Total: 5.18 kcal Atomic # 6 Polarization: -12.96 SS G_CDS: -0.91 Total: -13.87 kcal Atomic # 7 Polarization: -49.84 SS G_CDS: -0.43 Total: -50.27 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.67 Total: 17.12 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -29.44 -8.15 -37.59 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000386497761.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.009 kcal (2) G-P(sol) polarization free energy of solvation -29.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds