Wall clock time and date at job start Mon Mar 30 2020 03:09:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08991 * 109.47076 * 2 1 4 4 N 1.46902 * 109.47072 * 240.00277 * 2 1 3 5 5 C 1.46893 * 111.00110 * 84.99968 * 4 2 1 6 6 C 1.50708 * 109.47161 * 179.97438 * 5 4 2 7 7 H 1.07991 * 119.99789 * 0.02562 * 6 5 4 8 8 C 1.37877 * 120.00008 * 179.97438 * 6 5 4 9 9 N 1.31514 * 120.00089 * 180.02562 * 8 6 5 10 10 Si 1.86798 * 119.99938 * 0.02562 * 8 6 5 11 11 H 1.48506 * 109.47297 * 269.99556 * 10 8 6 12 12 H 1.48503 * 109.47261 * 149.99737 * 10 8 6 13 13 H 1.48500 * 109.47454 * 29.99730 * 10 8 6 14 14 C 1.52997 * 109.46739 * 120.00352 * 2 1 3 15 15 H 1.08996 * 109.46771 * 60.00168 * 14 2 1 16 16 C 1.53045 * 109.45971 * 179.97438 * 14 2 1 17 17 C 1.53114 * 109.27716 * 179.19279 * 16 14 2 18 18 C 1.53119 * 109.16446 * 302.34596 * 17 16 14 19 19 C 1.53037 * 109.27590 * 57.65503 * 18 17 16 20 20 N 1.46843 * 109.46212 * 300.01575 * 14 2 1 21 21 H 1.09001 * 109.47393 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.47057 * 300.00054 * 1 2 3 23 23 H 1.09000 * 109.46970 * 59.99752 * 1 2 3 24 24 H 1.00910 * 110.99726 * 321.04693 * 4 2 1 25 25 H 1.08994 * 109.47623 * 60.00186 * 5 4 2 26 26 H 1.09000 * 109.47422 * 300.00155 * 5 4 2 27 27 H 0.96997 * 119.99848 * 180.02562 * 9 8 6 28 28 H 1.08992 * 109.50103 * 299.13650 * 16 14 2 29 29 H 1.09003 * 109.50060 * 59.25131 * 16 14 2 30 30 H 1.09002 * 109.52597 * 62.25584 * 17 16 14 31 31 H 1.09006 * 109.52514 * 182.37822 * 17 16 14 32 32 H 1.09001 * 109.50459 * 177.59699 * 18 17 16 33 33 H 1.09000 * 109.50233 * 297.67660 * 18 17 16 34 34 H 1.09004 * 109.46565 * 60.83793 * 19 18 17 35 35 H 1.09000 * 109.46443 * 180.81789 * 19 18 17 36 36 H 1.00898 * 111.00289 * 302.34572 * 20 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6924 -1.1995 5 6 2.0825 0.2226 -2.3469 6 6 2.5886 -0.5215 -3.5558 7 1 2.8381 -1.5694 -3.4794 8 6 2.7319 0.1354 -4.7595 9 7 3.1731 -0.5140 -5.8146 10 14 2.2996 1.9479 -4.8917 11 1 0.8700 2.0896 -5.2682 12 1 3.1501 2.5853 -5.9288 13 1 2.5348 2.6096 -3.5833 14 6 2.0399 -0.7213 1.2492 15 1 1.6766 -1.7489 1.2490 16 6 3.5704 -0.7218 1.2487 17 6 4.0761 -1.4268 2.5103 18 6 3.5122 -0.7158 3.7437 19 6 1.9835 -0.7156 3.6718 20 7 1.5500 -0.0292 2.4480 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 1.4495 -1.4979 -1.4101 25 1 2.7589 1.0462 -2.1183 26 1 1.0871 0.6164 -2.5525 27 1 3.2743 -0.0518 -6.6613 28 1 3.9338 -1.2490 0.3667 29 1 3.9346 0.3055 1.2351 30 1 3.7446 -2.4652 2.5051 31 1 5.1653 -1.3923 2.5351 32 1 3.8341 -1.2388 4.6442 33 1 3.8760 0.3113 3.7697 34 1 1.6203 -1.7432 3.6601 35 1 1.5791 -0.1973 4.5413 36 1 1.8415 0.9367 2.4525 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000386497761.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:56 Heat of formation + Delta-G solvation = -38.905092 kcal Electronic energy + Delta-G solvation = -14606.536657 eV Core-core repulsion = 12316.536680 eV Total energy + Delta-G solvation = -2289.999977 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.16475 -37.40875 -34.84170 -32.92704 -32.16112 -30.21075 -28.18808 -25.03862 -23.85264 -23.14842 -21.58124 -21.16698 -18.93354 -17.01821 -16.31405 -16.20311 -15.81736 -15.54423 -15.03462 -14.84497 -14.46129 -14.24506 -14.03199 -13.64869 -13.24788 -13.12773 -12.70486 -12.56057 -12.40236 -12.24885 -11.90970 -11.80919 -11.73444 -11.56039 -11.42867 -11.05524 -10.82438 -9.27794 -8.97015 -8.30627 -6.34533 1.33406 1.35260 1.46500 2.33171 3.03558 3.14980 3.73387 3.88436 3.99745 4.12678 4.18451 4.33457 4.43866 4.51684 4.62101 4.70627 4.79487 4.85518 4.94215 5.00644 5.06598 5.12203 5.16064 5.22065 5.28425 5.34446 5.41323 5.44842 5.53737 5.98606 6.19985 6.52960 6.58227 6.69228 6.80235 7.30582 8.86253 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.047136 B = 0.006892 C = 0.006516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 593.883936 B = 4061.662012 C = 4295.902544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.087 3.913 3 H 0.060 0.940 4 N -0.679 5.679 5 C 0.180 3.820 6 C -0.526 4.526 7 H 0.037 0.963 8 C 0.008 3.992 9 N -0.948 5.948 10 Si 0.950 3.050 11 H -0.266 1.266 12 H -0.280 1.280 13 H -0.252 1.252 14 C 0.114 3.886 15 H 0.070 0.930 16 C -0.140 4.140 17 C -0.119 4.119 18 C -0.151 4.151 19 C 0.060 3.940 20 N -0.681 5.681 21 H 0.053 0.947 22 H 0.081 0.919 23 H 0.034 0.966 24 H 0.335 0.665 25 H 0.020 0.980 26 H -0.015 1.015 27 H 0.267 0.733 28 H 0.056 0.944 29 H 0.048 0.952 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.079 0.921 33 H 0.061 0.939 34 H 0.068 0.932 35 H 0.090 0.910 36 H 0.341 0.659 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.962 2.763 19.497 19.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.024 4.024 3 H 0.079 0.921 4 N -0.309 5.309 5 C 0.052 3.948 6 C -0.564 4.564 7 H 0.056 0.944 8 C -0.190 4.190 9 N -0.589 5.589 10 Si 0.773 3.227 11 H -0.191 1.191 12 H -0.206 1.206 13 H -0.175 1.175 14 C 0.003 3.997 15 H 0.088 0.912 16 C -0.179 4.179 17 C -0.156 4.156 18 C -0.190 4.190 19 C -0.069 4.069 20 N -0.310 5.310 21 H 0.072 0.928 22 H 0.100 0.900 23 H 0.053 0.947 24 H 0.153 0.847 25 H 0.038 0.962 26 H 0.002 0.998 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.066 0.934 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.097 0.903 33 H 0.079 0.921 34 H 0.087 0.913 35 H 0.108 0.892 36 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -2.882 2.555 19.473 19.850 hybrid contribution 0.184 0.746 -1.055 1.305 sum -2.697 3.300 18.418 18.905 Atomic orbital electron populations 1.22265 0.96178 1.01879 1.01684 1.21556 0.93592 0.97036 0.90213 0.92126 1.60374 1.56857 1.09814 1.03892 1.19697 0.93876 0.92628 0.88635 1.21360 1.43507 0.97505 0.94069 0.94445 1.25866 0.94612 1.03383 0.95090 1.70053 1.48219 1.38892 1.01687 0.85677 0.78751 0.79446 0.78807 1.19120 1.20603 1.17542 1.21234 0.92091 0.97604 0.88743 0.91174 1.22051 0.97306 1.00257 0.98329 1.21574 1.00202 0.99406 0.94454 1.22218 0.97823 1.00891 0.98071 1.22049 0.92684 0.99896 0.92296 1.60641 1.62743 1.06239 1.01421 0.92796 0.90009 0.94671 0.84721 0.96158 0.99783 0.92381 0.92479 0.93359 0.92213 0.92200 0.90259 0.92060 0.91326 0.89155 0.84096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.70 9.00 71.98 0.65 -4.05 16 2 C 0.09 2.79 2.30 44.92 0.10 2.89 16 3 H 0.06 2.03 7.80 -2.39 -0.02 2.01 16 4 N -0.68 -27.67 5.49 -495.59 -2.72 -30.39 16 5 C 0.18 8.72 4.31 85.56 0.37 9.09 16 6 C -0.53 -30.92 9.87 25.60 0.25 -30.67 16 7 H 0.04 2.44 8.06 -2.92 -0.02 2.41 16 8 C 0.01 0.47 5.47 84.65 0.46 0.93 16 9 N -0.95 -59.95 13.96 21.45 0.30 -59.65 16 10 Si 0.95 44.69 27.47 68.60 1.88 46.58 16 11 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 12 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 13 H -0.25 -11.11 6.54 99.48 0.65 -10.46 16 14 C 0.11 3.10 2.19 44.94 0.10 3.20 16 15 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 16 C -0.14 -3.96 5.19 30.65 0.16 -3.81 16 17 C -0.12 -2.66 6.00 30.67 0.18 -2.48 16 18 C -0.15 -2.64 6.08 30.65 0.19 -2.46 16 19 C 0.06 1.06 6.55 86.32 0.57 1.63 16 20 N -0.68 -14.87 5.73 -491.67 -2.82 -17.69 16 21 H 0.05 1.52 8.13 -2.39 -0.02 1.51 16 22 H 0.08 2.10 7.60 -2.39 -0.02 2.08 16 23 H 0.03 1.10 7.45 -2.39 -0.02 1.08 16 24 H 0.34 13.63 8.46 -89.69 -0.76 12.87 16 25 H 0.02 1.00 7.11 -2.39 -0.02 0.98 16 26 H -0.02 -0.73 6.86 -2.39 -0.02 -0.75 16 27 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 28 H 0.06 1.98 7.63 -2.39 -0.02 1.96 16 29 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.06 1.31 8.14 -2.38 -0.02 1.29 16 32 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 35 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.34 7.03 8.79 -89.70 -0.79 6.24 16 Total: -1.00 -63.90 281.72 -0.88 -64.79 By element: Atomic # 1 Polarization: 22.65 SS G_CDS: -0.56 Total: 22.10 kcal Atomic # 6 Polarization: -28.76 SS G_CDS: 3.03 Total: -25.73 kcal Atomic # 7 Polarization: -102.48 SS G_CDS: -5.24 Total: -107.72 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 1.88 Total: 46.58 kcal Total: -63.90 -0.88 -64.79 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000386497761.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.882 kcal (2) G-P(sol) polarization free energy of solvation -63.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds