Wall clock time and date at job start Mon Mar 30 2020 02:36:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09007 * 110.45999 * 2 1 4 4 C 1.54373 * 110.41313 * 237.58336 * 2 1 3 5 5 H 1.09001 * 110.32764 * 98.36730 * 4 2 1 6 6 N 1.46904 * 110.32145 * 336.26433 * 4 2 1 7 7 C 1.54263 * 105.06261 * 217.36952 * 4 2 1 8 8 C 1.54377 * 105.05804 * 359.97438 * 7 4 2 9 9 N 1.48558 * 104.59809 * 23.85234 * 8 7 4 10 10 C 1.46902 * 111.00145 * 200.96108 * 9 8 7 11 11 C 1.52994 * 109.46988 * 285.41543 * 10 9 8 12 12 C 1.52996 * 109.47119 * 180.02562 * 11 10 9 13 13 C 1.50702 * 109.47159 * 180.02562 * 12 11 10 14 14 H 1.08002 * 120.00299 * 0.02562 * 13 12 11 15 15 C 1.37884 * 119.99942 * 179.72211 * 13 12 11 16 16 N 1.31514 * 119.99698 * 0.28408 * 15 13 12 17 17 Si 1.86794 * 119.99837 * 180.27476 * 15 13 12 18 18 H 1.48496 * 109.47341 * 0.02562 * 17 15 13 19 19 H 1.48508 * 109.46983 * 120.00379 * 17 15 13 20 20 H 1.48503 * 109.47491 * 240.00192 * 17 15 13 21 21 H 1.09006 * 109.46545 * 299.04552 * 1 2 3 22 22 H 1.08991 * 109.46861 * 59.04143 * 1 2 3 23 23 H 1.08993 * 109.46759 * 179.04531 * 1 2 3 24 24 H 1.00899 * 110.99878 * 179.97438 * 6 4 2 25 25 H 1.00902 * 110.99628 * 303.94958 * 6 4 2 26 26 H 1.08999 * 110.32365 * 118.89429 * 7 4 2 27 27 H 1.09001 * 110.32092 * 241.00404 * 7 4 2 28 28 H 1.09005 * 110.40866 * 265.07619 * 8 7 4 29 29 H 1.09001 * 110.41279 * 142.63534 * 8 7 4 30 30 H 1.08998 * 109.46869 * 165.42370 * 10 9 8 31 31 H 1.08994 * 109.47040 * 45.42073 * 10 9 8 32 32 H 1.09004 * 109.46806 * 60.00264 * 11 10 9 33 33 H 1.09000 * 109.47828 * 300.00569 * 11 10 9 34 34 H 1.09004 * 109.47066 * 60.00422 * 12 11 10 35 35 H 1.08994 * 109.47405 * 300.00252 * 12 11 10 36 36 H 0.97005 * 119.99651 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9111 1.0213 0.0000 4 6 2.0685 -0.7756 -1.2213 5 1 2.3399 -0.0843 -2.0192 6 7 1.0645 -1.7358 -1.6990 7 6 3.3178 -1.5189 -0.7052 8 6 3.4295 -1.1293 0.7844 9 7 2.0487 -0.7454 1.1755 10 6 2.0578 0.1028 2.3749 11 6 2.3558 -0.7567 3.6050 12 6 2.3646 0.1265 4.8543 13 6 2.6588 -0.7200 6.0659 14 1 2.8233 -1.7817 5.9559 15 6 2.7239 -0.1380 7.3142 16 7 2.5239 1.1549 7.4481 17 14 3.0961 -1.1860 8.8150 18 1 3.2799 -2.5995 8.3985 19 1 4.3383 -0.6963 9.4650 20 1 1.9664 -1.0952 9.7747 21 1 -0.3633 0.4990 0.8985 22 1 -0.3633 0.5286 -0.8812 23 1 -0.3632 -1.0275 -0.0171 24 1 1.4060 -2.2485 -2.4981 25 1 0.7834 -2.3626 -0.9600 26 1 3.1861 -2.5962 -0.8064 27 1 4.2039 -1.1936 -1.2503 28 1 4.1078 -0.2849 0.9066 29 1 3.7694 -1.9798 1.3753 30 1 1.0838 0.5781 2.4911 31 1 2.8261 0.8690 2.2722 32 1 3.3297 -1.2321 3.4888 33 1 1.5874 -1.5230 3.7077 34 1 1.3905 0.6016 4.9703 35 1 3.1327 0.8930 4.7519 36 1 2.5694 1.5643 8.3263 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000388777562.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:17 Heat of formation + Delta-G solvation = -13.062047 kcal Electronic energy + Delta-G solvation = -14350.483986 eV Core-core repulsion = 12061.604647 eV Total energy + Delta-G solvation = -2288.879338 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.39325 -34.98397 -33.19156 -31.43845 -31.17890 -28.63266 -25.79129 -24.97295 -22.87911 -21.06916 -19.83941 -19.36947 -16.83758 -16.12937 -15.34414 -14.84568 -14.54613 -14.38368 -14.07177 -13.38165 -12.95637 -12.40505 -12.30758 -12.07085 -11.85332 -11.54471 -11.20505 -11.05095 -10.79887 -10.74207 -10.64244 -10.46962 -10.39159 -9.59338 -9.28370 -9.01583 -8.75398 -8.31983 -8.19651 -5.97047 -3.98814 3.32885 3.40137 3.44833 4.19605 4.46131 4.49996 4.61358 4.78943 5.11801 5.27587 5.38843 5.44163 5.61428 5.63275 5.69975 5.75845 5.90649 6.02423 6.04666 6.14259 6.17711 6.36123 6.56119 6.70790 6.83225 7.07898 7.11292 7.25502 7.38877 7.42996 7.72249 7.87366 8.03878 8.47537 9.08663 9.65041 11.14530 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.059795 B = 0.005504 C = 0.005315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 468.157368 B = 5086.138759 C = 5266.521952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.058 3.942 3 H 0.050 0.950 4 C 0.092 3.908 5 H 0.081 0.919 6 N -0.836 5.836 7 C -0.160 4.160 8 C 0.034 3.966 9 N -0.507 5.507 10 C 0.046 3.954 11 C -0.100 4.100 12 C 0.021 3.979 13 C -0.517 4.517 14 H 0.055 0.945 15 C 0.055 3.945 16 N -0.897 5.897 17 Si 0.891 3.109 18 H -0.273 1.273 19 H -0.285 1.285 20 H -0.284 1.284 21 H 0.047 0.953 22 H 0.055 0.945 23 H 0.067 0.933 24 H 0.334 0.666 25 H 0.348 0.652 26 H 0.068 0.932 27 H 0.066 0.934 28 H 0.043 0.957 29 H 0.081 0.919 30 H 0.070 0.930 31 H 0.030 0.970 32 H 0.044 0.956 33 H 0.054 0.946 34 H 0.015 0.985 35 H 0.013 0.987 36 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.346 -3.670 -16.913 17.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.051 4.051 3 H 0.068 0.932 4 C -0.021 4.021 5 H 0.099 0.901 6 N -0.365 5.365 7 C -0.200 4.200 8 C -0.095 4.095 9 N -0.232 5.232 10 C -0.082 4.082 11 C -0.138 4.138 12 C -0.017 4.017 13 C -0.555 4.555 14 H 0.073 0.927 15 C -0.145 4.145 16 N -0.537 5.537 17 Si 0.719 3.281 18 H -0.197 1.197 19 H -0.211 1.211 20 H -0.210 1.210 21 H 0.066 0.934 22 H 0.074 0.926 23 H 0.086 0.914 24 H 0.147 0.853 25 H 0.163 0.837 26 H 0.087 0.913 27 H 0.084 0.916 28 H 0.061 0.939 29 H 0.099 0.901 30 H 0.088 0.912 31 H 0.048 0.952 32 H 0.063 0.937 33 H 0.073 0.927 34 H 0.034 0.966 35 H 0.031 0.969 36 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -1.156 -3.350 -16.784 17.154 hybrid contribution 1.597 -0.411 1.065 1.963 sum 0.441 -3.762 -15.719 16.169 Atomic orbital electron populations 1.21448 0.93096 1.02655 1.00446 1.22707 0.97091 0.95390 0.89904 0.93233 1.22151 0.89358 0.94398 0.96154 0.90073 1.58958 1.42141 1.23552 1.11869 1.23210 0.99361 1.00738 0.96671 1.23054 0.90968 1.00665 0.94781 1.65431 1.17137 1.37850 1.02752 1.22458 1.00716 0.94675 0.90320 1.21564 1.00085 0.98591 0.93579 1.19086 0.97069 0.94742 0.90785 1.21296 1.47644 0.94624 0.91935 0.92665 1.25032 0.95507 0.94926 0.99081 1.69982 1.50357 1.09959 1.23358 0.86547 0.77875 0.80642 0.83008 1.19743 1.21074 1.21002 0.93381 0.92609 0.91438 0.85349 0.83738 0.91341 0.91554 0.93898 0.90091 0.91173 0.95171 0.93744 0.92700 0.96621 0.96903 0.93122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.52 8.83 37.16 0.33 -1.19 16 2 C 0.06 0.76 2.80 -66.08 -0.19 0.58 16 3 H 0.05 0.67 7.99 -51.93 -0.42 0.26 16 4 C 0.09 1.00 4.06 -66.33 -0.27 0.73 16 5 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 6 N -0.84 -8.16 7.89 -3.49 -0.03 -8.19 16 7 C -0.16 -1.72 6.77 -25.35 -0.17 -1.89 16 8 C 0.03 0.46 5.91 -2.18 -0.01 0.45 16 9 N -0.51 -7.76 5.02 -222.16 -1.11 -8.88 16 10 C 0.05 0.83 4.78 -3.83 -0.02 0.81 16 11 C -0.10 -2.16 5.27 -26.74 -0.14 -2.30 16 12 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 13 C -0.52 -15.00 9.11 -34.44 -0.31 -15.32 16 14 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 15 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 16 N -0.90 -27.45 13.29 55.43 0.74 -26.71 16 17 Si 0.89 22.02 29.54 -169.99 -5.02 17.00 16 18 H -0.27 -6.60 7.11 56.52 0.40 -6.19 16 19 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 20 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 21 H 0.05 0.65 7.31 -51.93 -0.38 0.27 16 22 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 23 H 0.07 0.87 6.66 -51.93 -0.35 0.53 16 24 H 0.33 2.62 9.08 -39.29 -0.36 2.26 16 25 H 0.35 3.62 8.05 -39.29 -0.32 3.31 16 26 H 0.07 0.70 7.95 -51.93 -0.41 0.29 16 27 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.04 0.61 7.75 -51.93 -0.40 0.20 16 29 H 0.08 1.17 7.85 -51.93 -0.41 0.76 16 30 H 0.07 1.28 7.18 -51.93 -0.37 0.91 16 31 H 0.03 0.55 7.77 -51.93 -0.40 0.15 16 32 H 0.04 0.95 7.47 -51.93 -0.39 0.56 16 33 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.26 7.44 8.31 -40.82 -0.34 7.11 16 LS Contribution 284.97 15.07 4.29 4.29 Total: -1.00 -30.16 284.97 -8.43 -38.59 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: -6.28 Total: 0.07 kcal Atomic # 6 Polarization: -15.17 SS G_CDS: -1.02 Total: -16.19 kcal Atomic # 7 Polarization: -43.37 SS G_CDS: -0.41 Total: -43.77 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -30.16 -8.43 -38.59 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388777562.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.527 kcal (2) G-P(sol) polarization free energy of solvation -30.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds