Wall clock time and date at job start Mon Mar 30 2020 02:36:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09007 * 110.45999 * 2 1 4 4 C 1.54373 * 110.41313 * 237.58336 * 2 1 3 5 5 H 1.09001 * 110.32764 * 98.36730 * 4 2 1 6 6 N 1.46904 * 110.32145 * 336.26433 * 4 2 1 7 7 C 1.54263 * 105.06261 * 217.36952 * 4 2 1 8 8 C 1.54377 * 105.05804 * 359.97438 * 7 4 2 9 9 N 1.48558 * 104.59809 * 23.85234 * 8 7 4 10 10 C 1.46902 * 111.00145 * 200.96108 * 9 8 7 11 11 C 1.52994 * 109.46988 * 285.41543 * 10 9 8 12 12 C 1.52996 * 109.47119 * 180.02562 * 11 10 9 13 13 C 1.50702 * 109.47159 * 180.02562 * 12 11 10 14 14 H 1.08002 * 120.00299 * 0.02562 * 13 12 11 15 15 C 1.37884 * 119.99942 * 179.72211 * 13 12 11 16 16 N 1.31514 * 119.99698 * 0.28408 * 15 13 12 17 17 Si 1.86794 * 119.99837 * 180.27476 * 15 13 12 18 18 H 1.48496 * 109.47341 * 0.02562 * 17 15 13 19 19 H 1.48508 * 109.46983 * 120.00379 * 17 15 13 20 20 H 1.48503 * 109.47491 * 240.00192 * 17 15 13 21 21 H 1.09006 * 109.46545 * 299.04552 * 1 2 3 22 22 H 1.08991 * 109.46861 * 59.04143 * 1 2 3 23 23 H 1.08993 * 109.46759 * 179.04531 * 1 2 3 24 24 H 1.00899 * 110.99878 * 179.97438 * 6 4 2 25 25 H 1.00902 * 110.99628 * 303.94958 * 6 4 2 26 26 H 1.08999 * 110.32365 * 118.89429 * 7 4 2 27 27 H 1.09001 * 110.32092 * 241.00404 * 7 4 2 28 28 H 1.09005 * 110.40866 * 265.07619 * 8 7 4 29 29 H 1.09001 * 110.41279 * 142.63534 * 8 7 4 30 30 H 1.08998 * 109.46869 * 165.42370 * 10 9 8 31 31 H 1.08994 * 109.47040 * 45.42073 * 10 9 8 32 32 H 1.09004 * 109.46806 * 60.00264 * 11 10 9 33 33 H 1.09000 * 109.47828 * 300.00569 * 11 10 9 34 34 H 1.09004 * 109.47066 * 60.00422 * 12 11 10 35 35 H 1.08994 * 109.47405 * 300.00252 * 12 11 10 36 36 H 0.97005 * 119.99651 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9111 1.0213 0.0000 4 6 2.0685 -0.7756 -1.2213 5 1 2.3399 -0.0843 -2.0192 6 7 1.0645 -1.7358 -1.6990 7 6 3.3178 -1.5189 -0.7052 8 6 3.4295 -1.1293 0.7844 9 7 2.0487 -0.7454 1.1755 10 6 2.0578 0.1028 2.3749 11 6 2.3558 -0.7567 3.6050 12 6 2.3646 0.1265 4.8543 13 6 2.6588 -0.7200 6.0659 14 1 2.8233 -1.7817 5.9559 15 6 2.7239 -0.1380 7.3142 16 7 2.5239 1.1549 7.4481 17 14 3.0961 -1.1860 8.8150 18 1 3.2799 -2.5995 8.3985 19 1 4.3383 -0.6963 9.4650 20 1 1.9664 -1.0952 9.7747 21 1 -0.3633 0.4990 0.8985 22 1 -0.3633 0.5286 -0.8812 23 1 -0.3632 -1.0275 -0.0171 24 1 1.4060 -2.2485 -2.4981 25 1 0.7834 -2.3626 -0.9600 26 1 3.1861 -2.5962 -0.8064 27 1 4.2039 -1.1936 -1.2503 28 1 4.1078 -0.2849 0.9066 29 1 3.7694 -1.9798 1.3753 30 1 1.0838 0.5781 2.4911 31 1 2.8261 0.8690 2.2722 32 1 3.3297 -1.2321 3.4888 33 1 1.5874 -1.5230 3.7077 34 1 1.3905 0.6016 4.9703 35 1 3.1327 0.8930 4.7519 36 1 2.5694 1.5643 8.3263 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388777562.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:17 Heat of formation + Delta-G solvation = -34.435906 kcal Electronic energy + Delta-G solvation = -14351.410826 eV Core-core repulsion = 12061.604647 eV Total energy + Delta-G solvation = -2289.806179 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.47637 -36.53920 -34.95085 -33.02693 -32.30888 -29.99821 -27.55105 -25.96670 -24.61721 -22.50054 -21.36342 -20.43001 -18.54803 -17.60335 -16.62640 -16.40262 -16.02495 -15.60503 -15.40304 -14.59731 -14.33035 -14.05828 -13.75906 -13.42012 -13.15698 -12.91494 -12.85139 -12.54295 -12.37561 -12.28756 -12.06843 -11.73294 -11.65445 -11.42562 -11.33519 -11.05350 -10.57386 -9.58257 -9.39305 -8.21653 -6.32923 1.38995 1.39489 1.53215 2.39946 3.01380 3.11416 3.60428 3.61585 3.85965 4.18273 4.20330 4.27091 4.35087 4.52562 4.59908 4.68622 4.74691 4.83055 4.87879 4.92476 5.02233 5.07004 5.16839 5.20672 5.22034 5.50373 5.51351 5.71049 5.83702 6.01337 6.05627 6.25629 6.30452 6.70144 6.83733 7.36452 8.90669 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.059795 B = 0.005504 C = 0.005315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 468.157368 B = 5086.138759 C = 5266.521952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.053 3.947 3 H 0.046 0.954 4 C 0.100 3.900 5 H 0.096 0.904 6 N -0.835 5.835 7 C -0.148 4.148 8 C 0.027 3.973 9 N -0.512 5.512 10 C 0.058 3.942 11 C -0.083 4.083 12 C 0.025 3.975 13 C -0.542 4.542 14 H 0.058 0.942 15 C -0.001 4.001 16 N -0.934 5.934 17 Si 0.967 3.033 18 H -0.263 1.263 19 H -0.277 1.277 20 H -0.276 1.276 21 H 0.032 0.968 22 H 0.068 0.932 23 H 0.066 0.934 24 H 0.348 0.652 25 H 0.345 0.655 26 H 0.077 0.923 27 H 0.084 0.916 28 H 0.037 0.963 29 H 0.072 0.928 30 H 0.064 0.936 31 H 0.025 0.975 32 H 0.045 0.955 33 H 0.050 0.950 34 H -0.009 1.009 35 H -0.011 1.011 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.004 -4.925 -17.905 18.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.056 4.056 3 H 0.064 0.936 4 C -0.013 4.013 5 H 0.114 0.886 6 N -0.366 5.366 7 C -0.188 4.188 8 C -0.101 4.101 9 N -0.237 5.237 10 C -0.070 4.070 11 C -0.121 4.121 12 C -0.012 4.012 13 C -0.580 4.580 14 H 0.076 0.924 15 C -0.199 4.199 16 N -0.575 5.575 17 Si 0.791 3.209 18 H -0.186 1.186 19 H -0.202 1.202 20 H -0.202 1.202 21 H 0.051 0.949 22 H 0.087 0.913 23 H 0.085 0.915 24 H 0.162 0.838 25 H 0.159 0.841 26 H 0.095 0.905 27 H 0.103 0.897 28 H 0.055 0.945 29 H 0.090 0.910 30 H 0.083 0.917 31 H 0.043 0.957 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.010 0.990 35 H 0.007 0.993 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.805 -4.617 -17.808 18.415 hybrid contribution 1.472 0.011 1.346 1.995 sum 0.668 -4.606 -16.462 17.108 Atomic orbital electron populations 1.21405 0.92890 1.02551 1.00273 1.22819 0.97266 0.95457 0.90048 0.93621 1.22085 0.89292 0.94615 0.95329 0.88607 1.58918 1.41828 1.23646 1.12212 1.23169 1.00145 1.01300 0.94232 1.23134 0.89863 1.00110 0.97027 1.65366 1.18403 1.37362 1.02559 1.22157 1.00131 0.94158 0.90553 1.21288 0.99988 0.97842 0.92985 1.18983 0.94712 0.94656 0.92897 1.21704 1.48074 0.95067 0.93194 0.92373 1.26003 0.94970 0.96273 1.02612 1.70109 1.50989 1.11860 1.24495 0.85371 0.77945 0.79040 0.78521 1.18647 1.20221 1.20202 0.94930 0.91330 0.91513 0.83782 0.84077 0.90452 0.89737 0.94460 0.90977 0.91743 0.95683 0.93591 0.93145 0.99047 0.99257 0.92724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.78 8.83 71.98 0.64 -2.14 16 2 C 0.05 1.32 2.80 45.07 0.13 1.44 16 3 H 0.05 1.19 7.99 -2.38 -0.02 1.17 16 4 C 0.10 1.90 4.06 45.81 0.19 2.08 16 5 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 6 N -0.84 -14.07 7.89 -164.97 -1.30 -15.38 16 7 C -0.15 -2.80 6.77 31.49 0.21 -2.59 16 8 C 0.03 0.71 5.91 86.45 0.51 1.22 16 9 N -0.51 -15.35 5.02 -856.79 -4.30 -19.65 16 10 C 0.06 2.14 4.78 86.30 0.41 2.56 16 11 C -0.08 -3.64 5.27 30.59 0.16 -3.48 16 12 C 0.03 1.38 4.97 29.85 0.15 1.53 16 13 C -0.54 -31.97 9.11 25.60 0.23 -31.73 16 14 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 15 C 0.00 -0.06 5.46 84.66 0.46 0.40 16 16 N -0.93 -58.05 13.29 21.45 0.28 -57.76 16 17 Si 0.97 45.14 29.54 68.60 2.03 47.16 16 18 H -0.26 -11.71 7.11 99.48 0.71 -11.01 16 19 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 20 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 21 H 0.03 0.88 7.31 -2.38 -0.02 0.86 16 22 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 23 H 0.07 1.64 6.66 -2.39 -0.02 1.62 16 24 H 0.35 4.37 9.08 -89.69 -0.81 3.56 16 25 H 0.35 6.39 8.05 -89.69 -0.72 5.67 16 26 H 0.08 1.35 7.95 -2.39 -0.02 1.33 16 27 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.04 1.02 7.75 -2.38 -0.02 1.01 16 29 H 0.07 2.02 7.85 -2.39 -0.02 2.00 16 30 H 0.06 2.42 7.18 -2.39 -0.02 2.40 16 31 H 0.02 0.94 7.77 -2.39 -0.02 0.92 16 32 H 0.05 1.97 7.47 -2.38 -0.02 1.96 16 33 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 34 H -0.01 -0.52 8.14 -2.38 -0.02 -0.54 16 35 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 36 H 0.26 15.29 8.31 -92.70 -0.77 14.52 16 Total: -1.00 -64.58 284.97 -0.69 -65.26 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: -0.49 Total: 11.06 kcal Atomic # 6 Polarization: -33.79 SS G_CDS: 3.09 Total: -30.70 kcal Atomic # 7 Polarization: -87.47 SS G_CDS: -5.32 Total: -92.78 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.16 kcal Total: -64.58 -0.69 -65.26 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388777562.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.828 kcal (2) G-P(sol) polarization free energy of solvation -64.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds