Wall clock time and date at job start Mon Mar 30 2020 02:36:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.90679 * 2 1 4 4 C 1.53995 * 109.91833 * 121.10385 * 2 1 3 5 5 H 1.09000 * 110.30928 * 239.69147 * 4 2 1 6 6 N 1.46900 * 110.30648 * 1.75925 * 4 2 1 7 7 C 1.54597 * 105.14093 * 120.77445 * 4 2 1 8 8 C 1.54936 * 102.91936 * 21.95570 * 7 4 2 9 9 N 1.47900 * 109.91499 * 238.89855 * 2 1 3 10 10 C 1.46893 * 111.00241 * 94.60623 * 9 2 1 11 11 C 1.52998 * 109.47521 * 170.00010 * 10 9 2 12 12 C 1.52998 * 109.47193 * 180.02562 * 11 10 9 13 13 C 1.50703 * 109.46945 * 179.97438 * 12 11 10 14 14 H 1.07997 * 120.00166 * 359.97438 * 13 12 11 15 15 C 1.37880 * 119.99762 * 179.97438 * 13 12 11 16 16 N 1.31512 * 120.00196 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99648 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47261 * 90.00334 * 17 15 13 19 19 H 1.48498 * 109.47132 * 209.99906 * 17 15 13 20 20 H 1.48500 * 109.47398 * 330.00120 * 17 15 13 21 21 H 1.09002 * 109.47094 * 299.29610 * 1 2 3 22 22 H 1.09000 * 109.47219 * 59.29404 * 1 2 3 23 23 H 1.08997 * 109.46998 * 179.30424 * 1 2 3 24 24 H 1.00903 * 110.99875 * 179.97438 * 6 4 2 25 25 H 1.00894 * 111.00337 * 303.95289 * 6 4 2 26 26 H 1.08989 * 110.72529 * 140.31525 * 7 4 2 27 27 H 1.09000 * 110.72281 * 263.60358 * 7 4 2 28 28 H 1.09005 * 110.66538 * 81.02346 * 8 7 4 29 29 H 1.09000 * 110.66444 * 203.98638 * 8 7 4 30 30 H 1.09005 * 109.47157 * 290.00390 * 10 9 2 31 31 H 1.09003 * 109.47284 * 49.99946 * 10 9 2 32 32 H 1.09005 * 109.47065 * 299.99811 * 11 10 9 33 33 H 1.09003 * 109.46893 * 59.99697 * 11 10 9 34 34 H 1.09000 * 109.47296 * 299.99284 * 12 11 10 35 35 H 1.08994 * 109.47416 * 60.00042 * 12 11 10 36 36 H 0.96997 * 120.00141 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9011 1.0249 0.0000 4 6 2.0546 -0.7479 1.2397 5 1 2.6685 -0.0853 1.8497 6 7 0.9336 -1.2741 2.0299 7 6 2.9101 -1.9075 0.6797 8 6 3.2732 -1.4141 -0.7434 9 7 2.0338 -0.7183 -1.1907 10 6 2.3167 0.2158 -2.2885 11 6 3.0629 -0.5189 -3.4039 12 6 3.3581 0.4543 -4.5470 13 6 4.0937 -0.2693 -5.6454 14 1 4.3276 -1.3182 -5.5386 15 6 4.4680 0.4078 -6.7866 16 7 4.1835 1.6852 -6.9165 17 14 5.3804 -0.4890 -8.1478 18 1 4.4013 -1.0604 -9.1070 19 1 6.2708 0.4639 -8.8580 20 1 6.1945 -1.5833 -7.5605 21 1 -0.3633 0.5029 0.8962 22 1 -0.3633 0.5248 -0.8836 23 1 -0.3633 -1.0276 -0.0125 24 1 1.2659 -1.7670 2.8453 25 1 0.2955 -0.5365 2.2880 26 1 3.8087 -2.0487 1.2800 27 1 2.3282 -2.8280 0.6319 28 1 4.1129 -0.7200 -0.7073 29 1 3.5002 -2.2569 -1.3965 30 1 1.3793 0.6126 -2.6785 31 1 2.9322 1.0357 -1.9184 32 1 4.0003 -0.9156 -3.0138 33 1 2.4473 -1.3388 -3.7740 34 1 2.4210 0.8513 -4.9373 35 1 3.9738 1.2738 -4.1766 36 1 4.4471 2.1617 -7.7192 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000388777574.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:20 Heat of formation + Delta-G solvation = -8.502387 kcal Electronic energy + Delta-G solvation = -14333.598200 eV Core-core repulsion = 12044.916583 eV Total energy + Delta-G solvation = -2288.681617 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.31365 -35.08445 -33.23504 -31.48447 -31.12332 -28.61938 -25.67094 -25.08504 -22.85526 -21.24794 -19.69610 -19.13820 -16.55768 -16.07361 -15.57455 -15.28989 -14.58574 -14.40253 -14.22484 -13.19571 -12.87971 -12.50744 -12.00299 -11.92689 -11.87424 -11.28703 -11.19878 -11.05514 -10.94915 -10.78719 -10.57504 -10.46943 -10.33486 -9.62186 -9.30570 -9.01684 -8.79958 -8.31010 -8.06544 -5.96341 -3.98278 3.34695 3.40523 3.44209 4.21090 4.38341 4.49488 4.59348 4.83688 5.13749 5.36753 5.39468 5.52671 5.63344 5.67268 5.70162 5.85459 5.91452 5.96575 6.06593 6.18479 6.25681 6.35420 6.54503 6.74314 6.85376 7.02721 7.11551 7.27105 7.33262 7.48600 7.72183 7.87431 8.04259 8.47743 9.08907 9.65532 11.15193 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.066026 B = 0.005455 C = 0.005188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 423.974112 B = 5131.459450 C = 5395.498141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.064 3.936 3 H 0.046 0.954 4 C 0.082 3.918 5 H 0.036 0.964 6 N -0.836 5.836 7 C -0.118 4.118 8 C 0.037 3.963 9 N -0.507 5.507 10 C 0.048 3.952 11 C -0.107 4.107 12 C 0.022 3.978 13 C -0.518 4.518 14 H 0.055 0.945 15 C 0.056 3.944 16 N -0.897 5.897 17 Si 0.892 3.108 18 H -0.280 1.280 19 H -0.287 1.287 20 H -0.274 1.274 21 H 0.046 0.954 22 H 0.049 0.951 23 H 0.074 0.926 24 H 0.336 0.664 25 H 0.341 0.659 26 H 0.064 0.936 27 H 0.084 0.916 28 H 0.043 0.957 29 H 0.086 0.914 30 H 0.071 0.929 31 H 0.028 0.972 32 H 0.047 0.953 33 H 0.056 0.944 34 H 0.016 0.984 35 H 0.013 0.987 36 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.397 -3.807 16.893 17.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.045 4.045 3 H 0.064 0.936 4 C -0.030 4.030 5 H 0.054 0.946 6 N -0.367 5.367 7 C -0.156 4.156 8 C -0.091 4.091 9 N -0.232 5.232 10 C -0.080 4.080 11 C -0.145 4.145 12 C -0.016 4.016 13 C -0.556 4.556 14 H 0.073 0.927 15 C -0.145 4.145 16 N -0.537 5.537 17 Si 0.720 3.280 18 H -0.206 1.206 19 H -0.213 1.213 20 H -0.199 1.199 21 H 0.065 0.935 22 H 0.068 0.932 23 H 0.093 0.907 24 H 0.148 0.852 25 H 0.155 0.845 26 H 0.082 0.918 27 H 0.103 0.897 28 H 0.062 0.938 29 H 0.104 0.896 30 H 0.089 0.911 31 H 0.046 0.954 32 H 0.066 0.934 33 H 0.074 0.926 34 H 0.034 0.966 35 H 0.031 0.969 36 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -4.937 -4.434 15.919 17.246 hybrid contribution 1.535 0.970 0.190 1.825 sum -3.402 -3.464 16.108 16.824 Atomic orbital electron populations 1.21539 0.93712 1.03014 0.99838 1.22441 0.97042 0.95232 0.89830 0.93642 1.22195 0.91264 0.95417 0.94089 0.94597 1.58922 1.18363 1.32519 1.26904 1.22581 0.98466 0.98798 0.95771 1.23224 0.91925 0.98873 0.95045 1.64950 1.26006 1.26786 1.05423 1.22473 0.99940 0.93551 0.92022 1.21691 0.97997 0.99579 0.95271 1.19073 0.96669 0.94078 0.91771 1.21257 1.36243 0.96262 1.01836 0.92697 1.25027 0.96186 0.94858 0.98433 1.69967 1.47390 1.08401 1.27903 0.86599 0.79769 0.79498 0.82166 1.20644 1.21278 1.19895 0.93545 0.93230 0.90667 0.85209 0.84518 0.91762 0.89741 0.93828 0.89608 0.91092 0.95424 0.93441 0.92571 0.96574 0.96888 0.93067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.53 8.45 37.16 0.31 -1.21 16 2 C 0.06 0.87 3.07 -66.64 -0.20 0.66 16 3 H 0.05 0.64 7.57 -51.93 -0.39 0.24 16 4 C 0.08 0.94 4.11 -66.35 -0.27 0.66 16 5 H 0.04 0.39 8.14 -51.93 -0.42 -0.04 16 6 N -0.84 -7.90 8.07 -3.51 -0.03 -7.93 16 7 C -0.12 -1.40 6.78 -24.87 -0.17 -1.57 16 8 C 0.04 0.55 5.13 -1.63 -0.01 0.54 16 9 N -0.51 -8.18 5.04 -222.16 -1.12 -9.30 16 10 C 0.05 0.88 5.04 -3.83 -0.02 0.86 16 11 C -0.11 -2.32 4.83 -26.73 -0.13 -2.45 16 12 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 13 C -0.52 -15.04 9.11 -34.44 -0.31 -15.35 16 14 H 0.05 1.55 7.74 -52.49 -0.41 1.15 16 15 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 16 N -0.90 -27.47 13.29 55.43 0.74 -26.74 16 17 Si 0.89 22.04 29.54 -169.99 -5.02 17.02 16 18 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 19 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 20 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 21 H 0.05 0.46 6.88 -51.93 -0.36 0.11 16 22 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 23 H 0.07 1.01 7.75 -51.93 -0.40 0.61 16 24 H 0.34 2.56 9.08 -39.29 -0.36 2.21 16 25 H 0.34 2.79 7.17 -39.29 -0.28 2.51 16 26 H 0.06 0.65 8.14 -51.94 -0.42 0.23 16 27 H 0.08 1.05 8.06 -51.93 -0.42 0.63 16 28 H 0.04 0.65 8.02 -51.93 -0.42 0.24 16 29 H 0.09 1.30 7.68 -51.93 -0.40 0.90 16 30 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 31 H 0.03 0.51 7.81 -51.93 -0.41 0.11 16 32 H 0.05 1.00 6.82 -51.93 -0.35 0.65 16 33 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 34 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 284.07 15.07 4.28 4.28 Total: -1.00 -30.71 284.07 -8.48 -39.19 By element: Atomic # 1 Polarization: 5.64 SS G_CDS: -6.29 Total: -0.64 kcal Atomic # 6 Polarization: -14.84 SS G_CDS: -1.04 Total: -15.88 kcal Atomic # 7 Polarization: -43.55 SS G_CDS: -0.41 Total: -43.96 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -30.71 -8.48 -39.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388777574.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.688 kcal (2) G-P(sol) polarization free energy of solvation -30.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds