Wall clock time and date at job start Mon Mar 30 2020 02:36:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.90679 * 2 1 4 4 C 1.53995 * 109.91833 * 121.10385 * 2 1 3 5 5 H 1.09000 * 110.30928 * 239.69147 * 4 2 1 6 6 N 1.46900 * 110.30648 * 1.75925 * 4 2 1 7 7 C 1.54597 * 105.14093 * 120.77445 * 4 2 1 8 8 C 1.54936 * 102.91936 * 21.95570 * 7 4 2 9 9 N 1.47900 * 109.91499 * 238.89855 * 2 1 3 10 10 C 1.46893 * 111.00241 * 94.60623 * 9 2 1 11 11 C 1.52998 * 109.47521 * 170.00010 * 10 9 2 12 12 C 1.52998 * 109.47193 * 180.02562 * 11 10 9 13 13 C 1.50703 * 109.46945 * 179.97438 * 12 11 10 14 14 H 1.07997 * 120.00166 * 359.97438 * 13 12 11 15 15 C 1.37880 * 119.99762 * 179.97438 * 13 12 11 16 16 N 1.31512 * 120.00196 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99648 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47261 * 90.00334 * 17 15 13 19 19 H 1.48498 * 109.47132 * 209.99906 * 17 15 13 20 20 H 1.48500 * 109.47398 * 330.00120 * 17 15 13 21 21 H 1.09002 * 109.47094 * 299.29610 * 1 2 3 22 22 H 1.09000 * 109.47219 * 59.29404 * 1 2 3 23 23 H 1.08997 * 109.46998 * 179.30424 * 1 2 3 24 24 H 1.00903 * 110.99875 * 179.97438 * 6 4 2 25 25 H 1.00894 * 111.00337 * 303.95289 * 6 4 2 26 26 H 1.08989 * 110.72529 * 140.31525 * 7 4 2 27 27 H 1.09000 * 110.72281 * 263.60358 * 7 4 2 28 28 H 1.09005 * 110.66538 * 81.02346 * 8 7 4 29 29 H 1.09000 * 110.66444 * 203.98638 * 8 7 4 30 30 H 1.09005 * 109.47157 * 290.00390 * 10 9 2 31 31 H 1.09003 * 109.47284 * 49.99946 * 10 9 2 32 32 H 1.09005 * 109.47065 * 299.99811 * 11 10 9 33 33 H 1.09003 * 109.46893 * 59.99697 * 11 10 9 34 34 H 1.09000 * 109.47296 * 299.99284 * 12 11 10 35 35 H 1.08994 * 109.47416 * 60.00042 * 12 11 10 36 36 H 0.96997 * 120.00141 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9011 1.0249 0.0000 4 6 2.0546 -0.7479 1.2397 5 1 2.6685 -0.0853 1.8497 6 7 0.9336 -1.2741 2.0299 7 6 2.9101 -1.9075 0.6797 8 6 3.2732 -1.4141 -0.7434 9 7 2.0338 -0.7183 -1.1907 10 6 2.3167 0.2158 -2.2885 11 6 3.0629 -0.5189 -3.4039 12 6 3.3581 0.4543 -4.5470 13 6 4.0937 -0.2693 -5.6454 14 1 4.3276 -1.3182 -5.5386 15 6 4.4680 0.4078 -6.7866 16 7 4.1835 1.6852 -6.9165 17 14 5.3804 -0.4890 -8.1478 18 1 4.4013 -1.0604 -9.1070 19 1 6.2708 0.4639 -8.8580 20 1 6.1945 -1.5833 -7.5605 21 1 -0.3633 0.5029 0.8962 22 1 -0.3633 0.5248 -0.8836 23 1 -0.3633 -1.0276 -0.0125 24 1 1.2659 -1.7670 2.8453 25 1 0.2955 -0.5365 2.2880 26 1 3.8087 -2.0487 1.2800 27 1 2.3282 -2.8280 0.6319 28 1 4.1129 -0.7200 -0.7073 29 1 3.5002 -2.2569 -1.3965 30 1 1.3793 0.6126 -2.6785 31 1 2.9322 1.0357 -1.9184 32 1 4.0003 -0.9156 -3.0138 33 1 2.4473 -1.3388 -3.7740 34 1 2.4210 0.8513 -4.9373 35 1 3.9738 1.2738 -4.1766 36 1 4.4471 2.1617 -7.7192 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388777574.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:19 Heat of formation + Delta-G solvation = -30.445227 kcal Electronic energy + Delta-G solvation = -14334.549713 eV Core-core repulsion = 12044.916583 eV Total energy + Delta-G solvation = -2289.633130 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.43901 -36.59870 -35.01656 -33.09298 -32.26822 -30.03227 -27.45703 -26.10256 -24.55998 -22.75201 -21.20817 -20.24435 -18.53395 -17.30717 -16.70319 -16.40638 -16.33784 -16.04858 -15.38213 -14.56392 -14.36881 -14.15793 -13.50757 -13.39096 -13.23165 -12.82114 -12.67383 -12.48938 -12.34662 -12.19194 -12.03562 -11.91494 -11.61506 -11.48078 -11.35429 -11.07720 -10.56419 -9.59795 -9.30927 -8.21050 -6.32473 1.39543 1.41400 1.52518 2.40481 3.00293 3.11997 3.57028 3.59690 3.79873 4.16025 4.22769 4.28737 4.33997 4.48844 4.63541 4.66289 4.75168 4.81902 4.87356 4.94397 4.99783 5.12294 5.15801 5.21088 5.24969 5.49706 5.52580 5.71223 5.83259 6.01021 6.10406 6.25887 6.33820 6.68452 6.83863 7.36863 8.91086 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.066026 B = 0.005455 C = 0.005188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 423.974112 B = 5131.459450 C = 5395.498141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.056 3.944 3 H 0.041 0.959 4 C 0.090 3.910 5 H 0.049 0.951 6 N -0.838 5.838 7 C -0.108 4.108 8 C 0.030 3.970 9 N -0.517 5.517 10 C 0.061 3.939 11 C -0.090 4.090 12 C 0.026 3.974 13 C -0.543 4.543 14 H 0.059 0.941 15 C -0.001 4.001 16 N -0.934 5.934 17 Si 0.967 3.033 18 H -0.272 1.272 19 H -0.280 1.280 20 H -0.263 1.263 21 H 0.073 0.927 22 H 0.034 0.966 23 H 0.065 0.935 24 H 0.349 0.651 25 H 0.349 0.651 26 H 0.086 0.914 27 H 0.080 0.920 28 H 0.039 0.961 29 H 0.076 0.924 30 H 0.063 0.937 31 H 0.024 0.976 32 H 0.052 0.948 33 H 0.050 0.950 34 H -0.009 1.009 35 H -0.010 1.010 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.107 -4.900 17.992 19.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.053 4.053 3 H 0.059 0.941 4 C -0.023 4.023 5 H 0.067 0.933 6 N -0.372 5.372 7 C -0.147 4.147 8 C -0.097 4.097 9 N -0.242 5.242 10 C -0.068 4.068 11 C -0.128 4.128 12 C -0.012 4.012 13 C -0.581 4.581 14 H 0.077 0.923 15 C -0.198 4.198 16 N -0.574 5.574 17 Si 0.791 3.209 18 H -0.197 1.197 19 H -0.206 1.206 20 H -0.187 1.187 21 H 0.092 0.908 22 H 0.053 0.947 23 H 0.084 0.916 24 H 0.163 0.837 25 H 0.165 0.835 26 H 0.105 0.895 27 H 0.099 0.901 28 H 0.057 0.943 29 H 0.095 0.905 30 H 0.082 0.918 31 H 0.042 0.958 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.009 0.991 35 H 0.008 0.992 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.657 -5.540 17.047 18.520 hybrid contribution 1.415 1.335 -0.123 1.949 sum -3.243 -4.205 16.924 17.738 Atomic orbital electron populations 1.21492 0.92873 1.02519 1.00563 1.22586 0.97719 0.95134 0.89843 0.94093 1.22071 0.91762 0.95047 0.93394 0.93331 1.58837 1.17862 1.32908 1.27605 1.22529 0.99478 0.98598 0.94062 1.23294 0.91250 0.98348 0.96857 1.64929 1.26797 1.26413 1.06040 1.22182 0.98935 0.93488 0.92162 1.21425 0.98557 0.98243 0.94603 1.18970 0.94728 0.94324 0.93149 1.21675 1.36830 0.96715 1.02919 0.92284 1.26001 0.96945 0.95677 1.01204 1.70099 1.48350 1.10105 1.28896 0.85420 0.78497 0.78388 0.78584 1.19711 1.20577 1.18709 0.90795 0.94662 0.91589 0.83707 0.83538 0.89526 0.90141 0.94287 0.90516 0.91823 0.95794 0.92946 0.93098 0.99091 0.99178 0.92725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.73 8.45 71.98 0.61 -2.12 16 2 C 0.06 1.45 3.07 45.06 0.14 1.58 16 3 H 0.04 1.10 7.57 -2.39 -0.02 1.09 16 4 C 0.09 1.81 4.11 45.80 0.19 1.99 16 5 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 6 N -0.84 -13.43 8.07 -165.03 -1.33 -14.77 16 7 C -0.11 -2.33 6.78 31.80 0.22 -2.11 16 8 C 0.03 0.86 5.13 86.55 0.44 1.31 16 9 N -0.52 -16.43 5.04 -856.77 -4.32 -20.75 16 10 C 0.06 2.28 5.04 86.30 0.43 2.71 16 11 C -0.09 -3.98 4.83 30.59 0.15 -3.83 16 12 C 0.03 1.43 4.97 29.85 0.15 1.58 16 13 C -0.54 -32.02 9.11 25.60 0.23 -31.78 16 14 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 15 C 0.00 -0.04 5.46 84.66 0.46 0.42 16 16 N -0.93 -58.10 13.29 21.45 0.28 -57.82 16 17 Si 0.97 45.13 29.54 68.60 2.03 47.16 16 18 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 19 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 20 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 21 H 0.07 1.30 6.88 -2.39 -0.02 1.28 16 22 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 23 H 0.07 1.68 7.75 -2.39 -0.02 1.66 16 24 H 0.35 4.21 9.08 -89.69 -0.81 3.39 16 25 H 0.35 4.65 7.17 -89.70 -0.64 4.00 16 26 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 27 H 0.08 1.82 8.06 -2.39 -0.02 1.80 16 28 H 0.04 1.14 8.02 -2.38 -0.02 1.12 16 29 H 0.08 2.28 7.68 -2.39 -0.02 2.27 16 30 H 0.06 2.46 8.14 -2.38 -0.02 2.44 16 31 H 0.02 0.91 7.81 -2.39 -0.02 0.89 16 32 H 0.05 2.23 6.82 -2.38 -0.02 2.22 16 33 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 34 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 35 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 36 H 0.26 15.35 8.31 -92.71 -0.77 14.57 16 Total: -1.00 -65.91 284.07 -0.73 -66.64 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: -0.41 Total: 9.79 kcal Atomic # 6 Polarization: -33.27 SS G_CDS: 3.02 Total: -30.25 kcal Atomic # 7 Polarization: -87.97 SS G_CDS: -5.37 Total: -93.33 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Total: -65.91 -0.73 -66.64 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388777574.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.197 kcal (2) G-P(sol) polarization free energy of solvation -65.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds