Wall clock time and date at job start Mon Mar 30 2020 02:36:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 110.36259 * 2 1 4 4 C 1.54379 * 110.41152 * 237.65313 * 2 1 3 5 5 H 1.09004 * 110.32416 * 336.25713 * 4 2 1 6 6 N 1.46896 * 110.32696 * 98.47093 * 4 2 1 7 7 C 1.54264 * 105.05559 * 217.36577 * 4 2 1 8 8 C 1.54376 * 105.06394 * 0.02562 * 7 4 2 9 9 N 1.48557 * 110.41012 * 122.34835 * 2 1 3 10 10 C 1.46897 * 110.99869 * 277.81983 * 9 2 1 11 11 C 1.53005 * 109.46776 * 170.00464 * 10 9 2 12 12 C 1.53006 * 109.47033 * 180.02562 * 11 10 9 13 13 C 1.50705 * 109.46962 * 180.02562 * 12 11 10 14 14 H 1.08004 * 119.99963 * 359.97438 * 13 12 11 15 15 C 1.37877 * 119.99664 * 179.97438 * 13 12 11 16 16 N 1.31513 * 119.99607 * 179.97438 * 15 13 12 17 17 Si 1.86798 * 120.00287 * 359.97438 * 15 13 12 18 18 H 1.48502 * 109.46757 * 89.99978 * 17 15 13 19 19 H 1.48494 * 109.47375 * 210.00356 * 17 15 13 20 20 H 1.48500 * 109.46975 * 330.00452 * 17 15 13 21 21 H 1.09001 * 109.47002 * 180.69851 * 1 2 3 22 22 H 1.08993 * 109.46955 * 300.70289 * 1 2 3 23 23 H 1.09000 * 109.47050 * 60.70117 * 1 2 3 24 24 H 1.00899 * 110.99945 * 179.97438 * 6 4 2 25 25 H 1.00899 * 110.99791 * 303.95047 * 6 4 2 26 26 H 1.09000 * 110.32103 * 118.89669 * 7 4 2 27 27 H 1.08998 * 110.32139 * 241.09995 * 7 4 2 28 28 H 1.08995 * 110.41651 * 142.63410 * 8 7 4 29 29 H 1.09001 * 110.40596 * 265.07522 * 8 7 4 30 30 H 1.08997 * 109.47172 * 289.99752 * 10 9 2 31 31 H 1.08993 * 109.47297 * 50.00801 * 10 9 2 32 32 H 1.09004 * 109.46875 * 299.99933 * 11 10 9 33 33 H 1.08996 * 109.47633 * 59.99929 * 11 10 9 34 34 H 1.08997 * 109.46783 * 299.99207 * 12 11 10 35 35 H 1.08996 * 109.47229 * 59.99363 * 12 11 10 36 36 H 0.97001 * 119.99660 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9093 1.0219 0.0000 4 6 2.0685 -0.7741 -1.2223 5 1 1.3236 -1.4863 -1.5776 6 7 2.4366 0.1589 -2.2956 7 6 3.3179 -1.5179 -0.7070 8 6 3.4288 -1.1312 0.7834 9 7 2.0481 -0.7450 1.1762 10 6 2.0568 0.1040 2.3750 11 6 2.3548 -0.7546 3.6058 12 6 2.3633 0.1296 4.8545 13 6 2.6574 -0.7161 6.0668 14 1 2.8215 -1.7780 5.9576 15 6 2.7171 -0.1340 7.3153 16 7 2.9732 -0.8721 8.3732 17 14 2.4340 1.7027 7.5041 18 1 0.9885 1.9605 7.7263 19 1 3.2109 2.2066 8.6649 20 1 2.8775 2.4012 6.2709 21 1 -0.3633 -1.0276 0.0125 22 1 -0.3633 0.5247 0.8836 23 1 -0.3633 0.5029 -0.8962 24 1 2.7905 -0.3368 -3.1000 25 1 1.6561 0.7467 -2.5472 26 1 3.1862 -2.5951 -0.8095 27 1 4.2042 -1.1907 -1.2505 28 1 3.7688 -1.9826 1.3728 29 1 4.1069 -0.2868 0.9074 30 1 2.8251 0.8703 2.2719 31 1 1.0828 0.5793 2.4907 32 1 1.5865 -1.5209 3.7089 33 1 3.3288 -1.2299 3.4902 34 1 3.1314 0.8961 4.7517 35 1 1.3891 0.6046 4.9700 36 1 3.0156 -0.4625 9.2515 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388777580.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:25 Heat of formation + Delta-G solvation = -35.736343 kcal Electronic energy + Delta-G solvation = -14320.922743 eV Core-core repulsion = 12031.060174 eV Total energy + Delta-G solvation = -2289.862570 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.37114 -36.54153 -34.95049 -33.36395 -32.35860 -30.51887 -27.79044 -25.65392 -24.36410 -22.29957 -21.40970 -20.71265 -18.89737 -17.10990 -16.71087 -16.29812 -16.15777 -16.00528 -15.21692 -14.83517 -14.66193 -14.40314 -13.78145 -13.54628 -13.22441 -12.92872 -12.82958 -12.45529 -12.24817 -12.22489 -11.98048 -11.75707 -11.60373 -11.44380 -11.36687 -11.23394 -10.76777 -9.63556 -9.44851 -8.29878 -6.34253 1.35203 1.37389 1.49672 2.36102 2.93756 3.05219 3.56203 3.70082 3.76153 4.12719 4.19109 4.27633 4.35258 4.45382 4.56245 4.66255 4.73955 4.77372 4.86977 4.89500 4.97761 5.03700 5.09853 5.13713 5.16090 5.34410 5.50693 5.57642 5.65394 5.91735 6.08751 6.29234 6.29752 6.62484 6.73621 7.30292 8.87299 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.054566 B = 0.005858 C = 0.005612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 513.012953 B = 4778.303506 C = 4987.686755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.058 3.942 3 H 0.051 0.949 4 C 0.095 3.905 5 H 0.054 0.946 6 N -0.848 5.848 7 C -0.113 4.113 8 C 0.031 3.969 9 N -0.517 5.517 10 C 0.056 3.944 11 C -0.083 4.083 12 C -0.010 4.010 13 C -0.534 4.534 14 H 0.028 0.972 15 C 0.003 3.997 16 N -0.953 5.953 17 Si 0.954 3.046 18 H -0.264 1.264 19 H -0.282 1.282 20 H -0.248 1.248 21 H 0.058 0.942 22 H 0.049 0.951 23 H 0.077 0.923 24 H 0.353 0.647 25 H 0.349 0.651 26 H 0.077 0.923 27 H 0.083 0.917 28 H 0.072 0.928 29 H 0.037 0.963 30 H 0.031 0.969 31 H 0.075 0.925 32 H 0.048 0.952 33 H 0.042 0.958 34 H 0.017 0.983 35 H 0.020 0.980 36 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.192 3.833 -22.433 22.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.050 4.050 3 H 0.069 0.931 4 C -0.017 4.017 5 H 0.072 0.928 6 N -0.380 5.380 7 C -0.152 4.152 8 C -0.097 4.097 9 N -0.241 5.241 10 C -0.072 4.072 11 C -0.121 4.121 12 C -0.048 4.048 13 C -0.572 4.572 14 H 0.047 0.953 15 C -0.194 4.194 16 N -0.594 5.594 17 Si 0.777 3.223 18 H -0.189 1.189 19 H -0.208 1.208 20 H -0.171 1.171 21 H 0.077 0.923 22 H 0.068 0.932 23 H 0.096 0.904 24 H 0.167 0.833 25 H 0.163 0.837 26 H 0.096 0.904 27 H 0.102 0.898 28 H 0.090 0.910 29 H 0.055 0.945 30 H 0.050 0.950 31 H 0.093 0.907 32 H 0.067 0.933 33 H 0.061 0.939 34 H 0.036 0.964 35 H 0.038 0.962 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.978 3.657 -21.609 22.117 hybrid contribution -0.127 0.550 0.228 0.609 sum -3.105 4.207 -21.380 22.010 Atomic orbital electron populations 1.21732 0.93063 1.02353 1.02059 1.22734 0.96411 0.96053 0.89834 0.93110 1.21992 0.95666 0.92778 0.91224 0.92789 1.58752 1.40321 1.25739 1.13232 1.22356 0.98494 1.00419 0.93887 1.23115 0.89804 1.00011 0.96766 1.65339 1.18663 1.37393 1.02737 1.22214 1.00837 0.94089 0.90054 1.21201 1.00163 0.97913 0.92857 1.19497 0.96334 0.95694 0.93231 1.21495 1.48029 0.95198 0.92448 0.95317 1.26059 0.94206 1.03824 0.95291 1.70078 1.51366 1.38365 0.99542 0.85602 0.79033 0.79164 0.78508 1.18918 1.20802 1.17121 0.92253 0.93230 0.90433 0.83314 0.83726 0.90442 0.89817 0.91000 0.94495 0.95026 0.90670 0.93341 0.93919 0.96428 0.96180 0.92454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.74 9.32 71.98 0.67 -2.07 16 2 C 0.06 1.37 2.54 45.07 0.11 1.48 16 3 H 0.05 1.29 7.91 -2.39 -0.02 1.27 16 4 C 0.10 1.82 3.74 45.81 0.17 1.99 16 5 H 0.05 0.97 7.86 -2.38 -0.02 0.95 16 6 N -0.85 -12.77 9.14 -164.97 -1.51 -14.28 16 7 C -0.11 -2.35 6.79 31.49 0.21 -2.14 16 8 C 0.03 0.85 5.93 86.43 0.51 1.37 16 9 N -0.52 -15.22 5.02 -856.49 -4.30 -19.52 16 10 C 0.06 1.90 4.78 86.31 0.41 2.31 16 11 C -0.08 -3.49 5.27 30.60 0.16 -3.33 16 12 C -0.01 -0.47 4.04 29.85 0.12 -0.35 16 13 C -0.53 -32.15 9.66 25.60 0.25 -31.90 16 14 H 0.03 1.90 7.99 -2.91 -0.02 1.88 16 15 C 0.00 0.16 5.47 84.65 0.46 0.62 16 16 N -0.95 -61.38 13.96 21.45 0.30 -61.08 16 17 Si 0.95 45.35 27.47 68.60 1.88 47.23 16 18 H -0.26 -11.97 7.11 99.48 0.71 -11.27 16 19 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 20 H -0.25 -10.95 6.54 99.48 0.65 -10.30 16 21 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 22 H 0.05 1.10 7.35 -2.39 -0.02 1.09 16 23 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 24 H 0.35 3.97 9.08 -89.69 -0.81 3.15 16 25 H 0.35 4.27 9.02 -89.69 -0.81 3.46 16 26 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 27 H 0.08 1.60 7.95 -2.39 -0.02 1.58 16 28 H 0.07 2.09 7.86 -2.39 -0.02 2.07 16 29 H 0.04 1.06 7.75 -2.39 -0.02 1.04 16 30 H 0.03 1.06 7.77 -2.39 -0.02 1.04 16 31 H 0.07 2.43 7.20 -2.39 -0.02 2.41 16 32 H 0.05 2.12 8.14 -2.38 -0.02 2.10 16 33 H 0.04 1.83 7.48 -2.39 -0.02 1.81 16 34 H 0.02 0.84 7.20 -2.39 -0.02 0.82 16 35 H 0.02 0.94 7.57 -2.39 -0.02 0.92 16 36 H 0.27 15.93 8.31 -92.71 -0.77 15.16 16 Total: -1.00 -67.82 284.73 -1.17 -68.98 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: -0.63 Total: 10.68 kcal Atomic # 6 Polarization: -35.10 SS G_CDS: 3.09 Total: -32.02 kcal Atomic # 7 Polarization: -89.36 SS G_CDS: -5.51 Total: -94.87 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 1.88 Total: 47.23 kcal Total: -67.82 -1.17 -68.98 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388777580.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.248 kcal (2) G-P(sol) polarization free energy of solvation -67.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds