Wall clock time and date at job start Mon Mar 30 2020 03:32:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46897 * 109.47161 * 2 1 4 4 C 1.48532 * 111.00004 * 307.39040 * 3 2 1 5 5 C 1.55195 * 103.23847 * 200.25762 * 4 3 2 6 6 C 1.54592 * 102.80101 * 37.43736 * 5 4 3 7 7 H 1.09002 * 110.30862 * 96.98158 * 6 5 4 8 8 N 1.46899 * 110.31155 * 219.04934 * 6 5 4 9 9 C 1.46900 * 110.99832 * 272.21524 * 8 6 5 10 10 H 1.08996 * 109.47587 * 34.99515 * 9 8 6 11 11 C 1.53003 * 109.46670 * 274.99351 * 9 8 6 12 12 C 1.50697 * 109.47083 * 155.00064 * 9 8 6 13 13 H 1.08007 * 120.00454 * 359.97438 * 12 9 8 14 14 C 1.37881 * 120.00097 * 179.97438 * 12 9 8 15 15 N 1.31508 * 119.99827 * 359.97438 * 14 12 9 16 16 Si 1.86799 * 120.00084 * 179.97438 * 14 12 9 17 17 H 1.48497 * 109.47072 * 0.02562 * 16 14 12 18 18 H 1.48504 * 109.46943 * 119.99978 * 16 14 12 19 19 H 1.48499 * 109.47296 * 240.00129 * 16 14 12 20 20 C 1.47903 * 110.99723 * 190.00045 * 3 2 1 21 21 H 1.08999 * 109.47310 * 300.00437 * 1 2 3 22 22 H 1.09000 * 109.46738 * 60.00332 * 1 2 3 23 23 H 1.09001 * 109.47042 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.46832 * 239.99354 * 2 1 3 25 25 H 1.08995 * 109.47055 * 120.00030 * 2 1 3 26 26 H 1.08996 * 110.67351 * 318.72000 * 4 3 2 27 27 H 1.09003 * 110.66251 * 81.68168 * 4 3 2 28 28 H 1.09001 * 110.76380 * 279.12697 * 5 4 3 29 29 H 1.08997 * 110.79759 * 155.76565 * 5 4 3 30 30 H 1.00898 * 111.00511 * 148.25337 * 8 6 5 31 31 H 1.08998 * 109.47089 * 180.02562 * 11 9 8 32 32 H 1.08996 * 109.47249 * 300.00371 * 11 9 8 33 33 H 1.09000 * 109.47105 * 60.00168 * 11 9 8 34 34 H 0.96999 * 120.00628 * 179.97438 * 15 14 12 35 35 H 1.08995 * 109.91938 * 26.48850 * 20 3 2 36 36 H 1.09009 * 110.07833 * 265.28727 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.4033 2.1675 -1.1017 5 6 2.3794 3.3608 -1.2794 6 6 3.7625 2.7090 -1.0512 7 1 4.2237 2.4561 -2.0059 8 7 4.6332 3.6139 -0.2891 9 6 5.3589 4.5245 -1.1848 10 1 4.7234 4.7845 -2.0313 11 6 6.6280 3.8367 -1.6920 12 6 5.7321 5.7764 -0.4336 13 1 5.4573 5.8851 0.6053 14 6 6.4243 6.7833 -1.0724 15 7 6.7594 6.6508 -2.3372 16 14 6.8863 8.3355 -0.1415 17 1 6.3974 8.2376 1.2573 18 1 8.3632 8.4904 -0.1395 19 1 6.2660 9.5120 -0.8020 20 6 3.4785 1.4313 -0.2398 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8933 -0.5139 -0.8899 25 1 1.8934 -0.5138 0.8899 26 1 1.3518 1.5731 -2.0139 27 1 0.4115 2.5182 -0.8162 28 1 2.1881 4.1312 -0.5324 29 1 2.3084 3.7724 -2.2862 30 1 5.2723 3.0949 0.2941 31 1 7.1668 4.5125 -2.3563 32 1 7.2635 3.5767 -0.8455 33 1 6.3582 2.9311 -2.2353 34 1 7.2461 7.3592 -2.7869 35 1 3.7896 0.5542 -0.8072 36 1 4.0128 1.4679 0.7097 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000389427482.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:07 Heat of formation + Delta-G solvation = 1.819189 kcal Electronic energy + Delta-G solvation = -14559.429206 eV Core-core repulsion = 12271.195166 eV Total energy + Delta-G solvation = -2288.234040 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.93259 -35.70602 -33.12478 -31.47568 -29.05650 -28.58345 -25.71376 -25.02571 -23.05022 -20.59015 -20.33399 -19.52211 -16.33205 -15.69062 -15.62751 -14.70299 -14.50639 -14.23111 -13.38490 -12.97210 -12.65338 -12.62897 -12.28117 -11.77029 -11.43711 -11.26816 -11.10347 -10.98104 -10.88032 -10.85927 -10.66447 -10.41715 -10.24648 -10.06466 -9.74106 -8.93149 -8.33212 -8.23683 -7.18256 -5.95095 -3.97771 3.34314 3.41943 3.47974 4.15011 4.47548 4.89227 5.04176 5.10832 5.22294 5.36777 5.39142 5.43488 5.54262 5.63801 5.73817 5.91150 5.95780 6.06982 6.13311 6.18342 6.29714 6.46805 6.70396 6.77953 6.85191 7.07907 7.14827 7.23683 7.45150 7.76819 7.94351 8.32773 8.58957 8.67697 9.10380 9.67628 11.12154 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.060554 B = 0.006286 C = 0.006111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 462.287403 B = 4453.099804 C = 4580.633457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.041 3.959 3 N -0.512 5.512 4 C 0.036 3.964 5 C -0.110 4.110 6 C 0.079 3.921 7 H 0.039 0.961 8 N -0.672 5.672 9 C 0.210 3.790 10 H 0.033 0.967 11 C -0.169 4.169 12 C -0.491 4.491 13 H 0.063 0.937 14 C 0.054 3.946 15 N -0.899 5.899 16 Si 0.896 3.104 17 H -0.273 1.273 18 H -0.286 1.286 19 H -0.286 1.286 20 C 0.038 3.962 21 H 0.063 0.937 22 H 0.055 0.945 23 H 0.055 0.945 24 H 0.030 0.970 25 H 0.072 0.928 26 H 0.037 0.963 27 H 0.078 0.922 28 H 0.088 0.912 29 H 0.063 0.937 30 H 0.325 0.675 31 H 0.088 0.912 32 H 0.027 0.973 33 H 0.003 0.997 34 H 0.258 0.742 35 H 0.036 0.964 36 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.513 -11.052 1.665 14.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.088 4.088 3 N -0.237 5.237 4 C -0.092 4.092 5 C -0.149 4.149 6 C -0.033 4.033 7 H 0.057 0.943 8 N -0.303 5.303 9 C 0.103 3.897 10 H 0.051 0.949 11 C -0.228 4.228 12 C -0.530 4.530 13 H 0.081 0.919 14 C -0.146 4.146 15 N -0.539 5.539 16 Si 0.725 3.275 17 H -0.197 1.197 18 H -0.213 1.213 19 H -0.212 1.212 20 C -0.090 4.090 21 H 0.082 0.918 22 H 0.074 0.926 23 H 0.074 0.926 24 H 0.048 0.952 25 H 0.091 0.909 26 H 0.055 0.945 27 H 0.096 0.904 28 H 0.106 0.894 29 H 0.082 0.918 30 H 0.143 0.857 31 H 0.107 0.893 32 H 0.047 0.953 33 H 0.022 0.978 34 H 0.068 0.932 35 H 0.055 0.945 36 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -9.058 -10.291 2.175 13.881 hybrid contribution 1.263 -0.205 -0.871 1.548 sum -7.795 -10.496 1.303 13.139 Atomic orbital electron populations 1.21838 0.95093 1.01385 1.02559 1.22263 0.95869 0.90187 1.00456 1.64785 1.04592 1.10861 1.43458 1.23281 0.98925 0.95038 0.91959 1.22597 0.93230 0.97223 1.01859 1.22268 0.94956 0.91019 0.95020 0.94310 1.60932 1.25786 1.19890 1.23646 1.19208 0.89225 0.90020 0.91292 0.94889 1.22443 1.01843 0.98027 1.00534 1.21211 1.33839 1.00089 0.97887 0.91866 1.24954 0.96132 0.98568 0.94965 1.69892 1.40703 1.33342 1.09988 0.86461 0.77852 0.83093 0.80116 1.19709 1.21280 1.21183 1.23085 0.88947 0.96873 1.00127 0.91801 0.92600 0.92581 0.95211 0.90946 0.94514 0.90381 0.89355 0.91832 0.85731 0.89291 0.95347 0.97815 0.93203 0.94530 0.89932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 9.57 37.16 0.36 -1.16 16 2 C 0.04 0.48 5.75 -3.82 -0.02 0.46 16 3 N -0.51 -7.52 5.40 -230.28 -1.24 -8.76 16 4 C 0.04 0.51 5.11 -1.76 -0.01 0.50 16 5 C -0.11 -1.91 6.67 -24.73 -0.17 -2.07 16 6 C 0.08 1.45 3.08 -66.36 -0.20 1.24 16 7 H 0.04 0.75 7.19 -51.93 -0.37 0.38 16 8 N -0.67 -14.46 6.01 -99.54 -0.60 -15.06 16 9 C 0.21 5.32 2.43 -68.86 -0.17 5.16 16 10 H 0.03 0.92 7.78 -51.93 -0.40 0.52 16 11 C -0.17 -4.11 8.92 37.16 0.33 -3.78 16 12 C -0.49 -13.74 8.84 -34.44 -0.30 -14.04 16 13 H 0.06 1.79 7.81 -52.48 -0.41 1.38 16 14 C 0.05 1.51 5.30 -17.82 -0.09 1.41 16 15 N -0.90 -25.95 11.32 55.43 0.63 -25.32 16 16 Si 0.90 21.71 29.54 -169.99 -5.02 16.69 16 17 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 18 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 19 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 20 C 0.04 0.59 6.39 -2.75 -0.02 0.57 16 21 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 22 H 0.05 0.56 6.79 -51.93 -0.35 0.20 16 23 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.03 0.35 7.81 -51.93 -0.41 -0.06 16 25 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.04 0.49 8.00 -51.93 -0.42 0.07 16 27 H 0.08 1.02 7.66 -51.93 -0.40 0.63 16 28 H 0.09 1.70 8.06 -51.93 -0.42 1.28 16 29 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.33 6.66 7.79 -39.29 -0.31 6.36 16 31 H 0.09 2.40 6.07 -51.93 -0.32 2.08 16 32 H 0.03 0.66 8.13 -51.93 -0.42 0.23 16 33 H 0.00 0.06 7.47 -51.93 -0.39 -0.32 16 34 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 35 H 0.04 0.53 7.57 -51.93 -0.39 0.13 16 36 H 0.08 1.30 7.49 -51.92 -0.39 0.92 16 LS Contribution 282.15 15.07 4.25 4.25 Total: -1.00 -28.62 282.15 -8.50 -37.12 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: -6.22 Total: 2.79 kcal Atomic # 6 Polarization: -11.41 SS G_CDS: -0.30 Total: -11.71 kcal Atomic # 7 Polarization: -47.93 SS G_CDS: -1.21 Total: -49.14 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -28.62 -8.50 -37.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389427482.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.937 kcal (2) G-P(sol) polarization free energy of solvation -28.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.117 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds