Wall clock time and date at job start Mon Mar 30 2020 03:32:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46897 * 109.47161 * 2 1 4 4 C 1.48532 * 111.00004 * 307.39040 * 3 2 1 5 5 C 1.55195 * 103.23847 * 200.25762 * 4 3 2 6 6 C 1.54592 * 102.80101 * 37.43736 * 5 4 3 7 7 H 1.09002 * 110.30862 * 96.98158 * 6 5 4 8 8 N 1.46899 * 110.31155 * 219.04934 * 6 5 4 9 9 C 1.46900 * 110.99832 * 272.21524 * 8 6 5 10 10 H 1.08996 * 109.47587 * 34.99515 * 9 8 6 11 11 C 1.53003 * 109.46670 * 274.99351 * 9 8 6 12 12 C 1.50697 * 109.47083 * 155.00064 * 9 8 6 13 13 H 1.08007 * 120.00454 * 359.97438 * 12 9 8 14 14 C 1.37881 * 120.00097 * 179.97438 * 12 9 8 15 15 N 1.31508 * 119.99827 * 359.97438 * 14 12 9 16 16 Si 1.86799 * 120.00084 * 179.97438 * 14 12 9 17 17 H 1.48497 * 109.47072 * 0.02562 * 16 14 12 18 18 H 1.48504 * 109.46943 * 119.99978 * 16 14 12 19 19 H 1.48499 * 109.47296 * 240.00129 * 16 14 12 20 20 C 1.47903 * 110.99723 * 190.00045 * 3 2 1 21 21 H 1.08999 * 109.47310 * 300.00437 * 1 2 3 22 22 H 1.09000 * 109.46738 * 60.00332 * 1 2 3 23 23 H 1.09001 * 109.47042 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.46832 * 239.99354 * 2 1 3 25 25 H 1.08995 * 109.47055 * 120.00030 * 2 1 3 26 26 H 1.08996 * 110.67351 * 318.72000 * 4 3 2 27 27 H 1.09003 * 110.66251 * 81.68168 * 4 3 2 28 28 H 1.09001 * 110.76380 * 279.12697 * 5 4 3 29 29 H 1.08997 * 110.79759 * 155.76565 * 5 4 3 30 30 H 1.00898 * 111.00511 * 148.25337 * 8 6 5 31 31 H 1.08998 * 109.47089 * 180.02562 * 11 9 8 32 32 H 1.08996 * 109.47249 * 300.00371 * 11 9 8 33 33 H 1.09000 * 109.47105 * 60.00168 * 11 9 8 34 34 H 0.96999 * 120.00628 * 179.97438 * 15 14 12 35 35 H 1.08995 * 109.91938 * 26.48850 * 20 3 2 36 36 H 1.09009 * 110.07833 * 265.28727 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.4033 2.1675 -1.1017 5 6 2.3794 3.3608 -1.2794 6 6 3.7625 2.7090 -1.0512 7 1 4.2237 2.4561 -2.0059 8 7 4.6332 3.6139 -0.2891 9 6 5.3589 4.5245 -1.1848 10 1 4.7234 4.7845 -2.0313 11 6 6.6280 3.8367 -1.6920 12 6 5.7321 5.7764 -0.4336 13 1 5.4573 5.8851 0.6053 14 6 6.4243 6.7833 -1.0724 15 7 6.7594 6.6508 -2.3372 16 14 6.8863 8.3355 -0.1415 17 1 6.3974 8.2376 1.2573 18 1 8.3632 8.4904 -0.1395 19 1 6.2660 9.5120 -0.8020 20 6 3.4785 1.4313 -0.2398 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8933 -0.5139 -0.8899 25 1 1.8934 -0.5138 0.8899 26 1 1.3518 1.5731 -2.0139 27 1 0.4115 2.5182 -0.8162 28 1 2.1881 4.1312 -0.5324 29 1 2.3084 3.7724 -2.2862 30 1 5.2723 3.0949 0.2941 31 1 7.1668 4.5125 -2.3563 32 1 7.2635 3.5767 -0.8455 33 1 6.3582 2.9311 -2.2353 34 1 7.2461 7.3592 -2.7869 35 1 3.7896 0.5542 -0.8072 36 1 4.0128 1.4679 0.7097 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000389427482.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:07 Heat of formation + Delta-G solvation = -18.234358 kcal Electronic energy + Delta-G solvation = -14560.298793 eV Core-core repulsion = 12271.195166 eV Total energy + Delta-G solvation = -2289.103627 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.21237 -37.39703 -34.80676 -33.07019 -30.37255 -30.05928 -27.36355 -27.01888 -24.11606 -22.36420 -21.54163 -21.05724 -18.35480 -17.11447 -16.90644 -16.48733 -15.89466 -15.50790 -15.00614 -14.52732 -14.04015 -14.01410 -13.65543 -13.38938 -12.94143 -12.88606 -12.70988 -12.41199 -12.30842 -12.18791 -12.17847 -12.09854 -11.81241 -11.70865 -11.55330 -10.98350 -10.48288 -9.35029 -8.93903 -8.09030 -6.19738 1.42425 1.44206 1.56914 2.45109 3.05655 3.19502 3.58727 3.67668 3.90756 4.22573 4.30634 4.33845 4.38244 4.58452 4.64614 4.69999 4.74768 4.84579 4.87307 4.93224 4.98667 5.06607 5.12388 5.14744 5.32056 5.33683 5.48421 5.70166 5.82864 5.95148 6.17913 6.29874 6.67339 6.86573 6.96432 7.50461 8.96901 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.060554 B = 0.006286 C = 0.006111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 462.287403 B = 4453.099804 C = 4580.633457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.038 3.962 3 N -0.526 5.526 4 C 0.048 3.952 5 C -0.113 4.113 6 C 0.075 3.925 7 H 0.029 0.971 8 N -0.676 5.676 9 C 0.218 3.782 10 H 0.001 0.999 11 C -0.156 4.156 12 C -0.512 4.512 13 H 0.053 0.947 14 C 0.008 3.992 15 N -0.924 5.924 16 Si 0.961 3.039 17 H -0.269 1.269 18 H -0.280 1.280 19 H -0.282 1.282 20 C 0.047 3.953 21 H 0.058 0.942 22 H 0.056 0.944 23 H 0.075 0.925 24 H 0.036 0.964 25 H 0.079 0.921 26 H 0.051 0.949 27 H 0.091 0.909 28 H 0.064 0.936 29 H 0.058 0.942 30 H 0.331 0.669 31 H 0.061 0.939 32 H 0.033 0.967 33 H 0.023 0.977 34 H 0.260 0.740 35 H 0.053 0.947 36 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.176 -12.050 2.269 15.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.089 4.089 3 N -0.251 5.251 4 C -0.080 4.080 5 C -0.151 4.151 6 C -0.036 4.036 7 H 0.047 0.953 8 N -0.307 5.307 9 C 0.109 3.891 10 H 0.019 0.981 11 C -0.216 4.216 12 C -0.551 4.551 13 H 0.071 0.929 14 C -0.190 4.190 15 N -0.564 5.564 16 Si 0.787 3.213 17 H -0.194 1.194 18 H -0.206 1.206 19 H -0.208 1.208 20 C -0.081 4.081 21 H 0.077 0.923 22 H 0.075 0.925 23 H 0.094 0.906 24 H 0.054 0.946 25 H 0.097 0.903 26 H 0.069 0.931 27 H 0.110 0.890 28 H 0.083 0.917 29 H 0.076 0.924 30 H 0.149 0.851 31 H 0.080 0.920 32 H 0.052 0.948 33 H 0.042 0.958 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -9.733 -11.309 2.785 15.178 hybrid contribution 1.437 0.069 -1.073 1.795 sum -8.296 -11.239 1.712 14.074 Atomic orbital electron populations 1.21814 0.93643 1.02684 1.02320 1.22369 0.97075 0.88427 1.01073 1.64792 1.03846 1.12862 1.43627 1.23201 0.98459 0.93678 0.92649 1.22546 0.93839 0.98005 1.00750 1.22351 0.94543 0.92025 0.94717 0.95311 1.60816 1.25597 1.20750 1.23494 1.18933 0.89243 0.90421 0.90502 0.98145 1.22248 1.01050 0.98046 1.00222 1.21480 1.34294 1.01654 0.97669 0.92861 1.25714 0.95983 1.01494 0.95777 1.70013 1.40999 1.34247 1.11179 0.85464 0.77704 0.79303 0.78871 1.19382 1.20555 1.20765 1.22942 0.89946 0.95624 0.99610 0.92316 0.92536 0.90575 0.94573 0.90289 0.93094 0.89036 0.91727 0.92368 0.85085 0.92003 0.94815 0.95846 0.93048 0.92913 0.90178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.51 9.57 71.98 0.69 -1.82 16 2 C 0.04 0.80 5.75 86.31 0.50 1.29 16 3 N -0.53 -14.34 5.40 -882.47 -4.76 -19.11 16 4 C 0.05 1.28 5.11 86.74 0.44 1.72 16 5 C -0.11 -3.89 6.67 31.89 0.21 -3.68 16 6 C 0.07 2.71 3.08 45.79 0.14 2.86 16 7 H 0.03 1.11 7.19 -2.39 -0.02 1.09 16 8 N -0.68 -29.26 6.01 -468.82 -2.82 -32.08 16 9 C 0.22 11.22 2.43 44.17 0.11 11.33 16 10 H 0.00 0.03 7.78 -2.39 -0.02 0.02 16 11 C -0.16 -7.63 8.92 71.98 0.64 -6.99 16 12 C -0.51 -29.02 8.84 25.60 0.23 -28.80 16 13 H 0.05 3.06 7.81 -2.91 -0.02 3.03 16 14 C 0.01 0.46 5.30 84.66 0.45 0.91 16 15 N -0.92 -53.93 11.32 21.45 0.24 -53.69 16 16 Si 0.96 44.66 29.54 68.60 2.03 46.69 16 17 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 18 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 19 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 20 C 0.05 1.39 6.39 86.45 0.55 1.94 16 21 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 22 H 0.06 0.95 6.79 -2.39 -0.02 0.94 16 23 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 24 H 0.04 0.72 7.81 -2.39 -0.02 0.70 16 25 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 26 H 0.05 1.23 8.00 -2.39 -0.02 1.21 16 27 H 0.09 2.21 7.66 -2.39 -0.02 2.19 16 28 H 0.06 2.53 8.06 -2.39 -0.02 2.51 16 29 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 30 H 0.33 13.48 7.79 -89.70 -0.70 12.78 16 31 H 0.06 3.37 6.07 -2.39 -0.01 3.36 16 32 H 0.03 1.56 8.13 -2.39 -0.02 1.54 16 33 H 0.02 1.00 7.47 -2.39 -0.02 0.98 16 34 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 35 H 0.05 1.39 7.57 -2.39 -0.02 1.37 16 36 H 0.08 2.41 7.49 -2.38 -0.02 2.39 16 Total: -1.00 -60.75 282.15 -1.02 -61.77 By element: Atomic # 1 Polarization: 17.32 SS G_CDS: 0.34 Total: 17.65 kcal Atomic # 6 Polarization: -25.20 SS G_CDS: 3.96 Total: -21.24 kcal Atomic # 7 Polarization: -97.54 SS G_CDS: -7.34 Total: -104.87 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Total: -60.75 -1.02 -61.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389427482.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.535 kcal (2) G-P(sol) polarization free energy of solvation -60.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds