Wall clock time and date at job start Mon Mar 30 2020 03:32:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46901 * 109.47342 * 2 1 4 4 C 1.48559 * 110.99886 * 175.43893 * 3 2 1 5 5 C 1.54387 * 104.58847 * 200.95783 * 4 3 2 6 6 C 1.54256 * 105.06539 * 23.85264 * 5 4 3 7 7 H 1.08995 * 110.32577 * 241.00429 * 6 5 4 8 8 N 1.46900 * 110.32218 * 118.89452 * 6 5 4 9 9 C 1.46897 * 111.00110 * 86.45868 * 8 6 5 10 10 H 1.09001 * 109.47019 * 34.99145 * 9 8 6 11 11 C 1.52999 * 109.46778 * 274.99928 * 9 8 6 12 12 C 1.50698 * 109.47401 * 154.99606 * 9 8 6 13 13 H 1.07998 * 119.99927 * 5.47568 * 12 9 8 14 14 C 1.37872 * 120.00333 * 185.47071 * 12 9 8 15 15 N 1.31520 * 119.99707 * 5.47456 * 14 12 9 16 16 Si 1.86797 * 120.00264 * 185.20079 * 14 12 9 17 17 H 1.48500 * 109.47230 * 84.99772 * 16 14 12 18 18 H 1.48503 * 109.46775 * 205.00095 * 16 14 12 19 19 H 1.48503 * 109.46879 * 324.99820 * 16 14 12 20 20 C 1.48564 * 111.00111 * 60.01777 * 3 2 1 21 21 H 1.08996 * 109.47332 * 184.87628 * 1 2 3 22 22 H 1.09002 * 109.47195 * 304.87871 * 1 2 3 23 23 H 1.09001 * 109.46529 * 64.87760 * 1 2 3 24 24 H 1.08994 * 109.47530 * 239.99741 * 2 1 3 25 25 H 1.09006 * 109.46835 * 119.99830 * 2 1 3 26 26 H 1.08998 * 110.41254 * 82.17938 * 4 3 2 27 27 H 1.08996 * 110.51426 * 319.78053 * 4 3 2 28 28 H 1.08997 * 110.31856 * 264.95402 * 5 4 3 29 29 H 1.08997 * 110.40699 * 142.79759 * 5 4 3 30 30 H 1.00904 * 110.99757 * 210.40752 * 8 6 5 31 31 H 1.08994 * 109.47262 * 55.27939 * 11 9 8 32 32 H 1.09000 * 109.47125 * 175.28369 * 11 9 8 33 33 H 1.09009 * 109.47131 * 295.28384 * 11 9 8 34 34 H 0.96996 * 119.99888 * 179.72535 * 15 14 12 35 35 H 1.09000 * 110.41317 * 40.25936 * 20 3 2 36 36 H 1.09007 * 110.40737 * 277.81990 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3850 0.0000 4 6 3.5007 1.4260 0.1103 5 6 3.8126 2.8451 0.6321 6 6 2.5253 3.3003 1.3498 7 1 2.1207 4.1925 0.8720 8 7 2.7979 3.5620 2.7694 9 6 3.2722 4.9378 2.9696 10 1 2.7704 5.6011 2.2651 11 6 4.7832 4.9953 2.7365 12 6 2.9641 5.3754 4.3783 13 1 2.5468 4.6717 5.0833 14 6 3.2152 6.6741 4.7673 15 7 3.6215 7.5585 3.8828 16 14 2.9709 7.1793 6.5490 17 1 4.1953 6.8604 7.3263 18 1 2.7070 8.6391 6.6177 19 1 1.8160 6.4401 7.1191 20 6 1.5438 2.1180 1.2014 21 1 -0.3634 -1.0239 0.0874 22 1 -0.3634 0.5877 0.8431 23 1 -0.3632 0.4363 -0.9305 24 1 1.8934 -0.5138 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 3.9591 1.2708 -0.8664 27 1 3.8520 0.6751 0.8179 28 1 4.0389 3.5128 -0.1992 29 1 4.6472 2.8175 1.3327 30 1 1.9833 3.3745 3.3346 31 1 5.0135 4.5999 1.7472 32 1 5.1219 6.0292 2.8025 33 1 5.2907 4.3976 3.4938 34 1 3.7943 8.4732 4.1556 35 1 1.5869 1.4754 2.0807 36 1 0.5287 2.4838 1.0461 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000389427485.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:09 Heat of formation + Delta-G solvation = -20.511336 kcal Electronic energy + Delta-G solvation = -14612.304965 eV Core-core repulsion = 12323.102601 eV Total energy + Delta-G solvation = -2289.202364 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.21732 -37.30276 -34.76940 -33.11084 -30.86775 -29.35279 -28.04824 -27.06921 -23.79063 -22.23356 -21.51234 -21.02615 -18.53388 -17.18134 -16.83164 -16.76016 -15.56497 -15.43281 -15.01867 -14.81510 -14.37474 -13.88615 -13.45509 -13.27906 -13.04778 -12.81937 -12.73614 -12.59201 -12.43475 -12.23165 -12.09845 -11.98050 -11.72309 -11.59712 -11.50986 -10.82829 -10.56550 -9.45556 -9.11143 -8.16423 -6.28012 1.41579 1.43089 1.52310 2.40984 3.00365 3.15136 3.67107 3.74892 3.83125 4.20772 4.29972 4.36546 4.39940 4.62545 4.63401 4.69248 4.84997 4.95675 4.96515 4.98702 5.06646 5.12996 5.14991 5.20954 5.22515 5.33177 5.48573 5.66596 5.79842 5.89523 6.11735 6.16424 6.45449 6.78756 6.99868 7.42369 8.92138 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.052936 B = 0.006622 C = 0.006145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 528.809184 B = 4227.489869 C = 4555.797736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.038 3.962 3 N -0.520 5.520 4 C 0.043 3.957 5 C -0.114 4.114 6 C 0.078 3.922 7 H 0.022 0.978 8 N -0.676 5.676 9 C 0.217 3.783 10 H -0.030 1.030 11 C -0.110 4.110 12 C -0.540 4.540 13 H 0.060 0.940 14 C 0.014 3.986 15 N -0.921 5.921 16 Si 0.962 3.038 17 H -0.274 1.274 18 H -0.284 1.284 19 H -0.267 1.267 20 C 0.045 3.955 21 H 0.075 0.925 22 H 0.047 0.953 23 H 0.059 0.941 24 H 0.087 0.913 25 H 0.034 0.966 26 H 0.093 0.907 27 H 0.047 0.953 28 H 0.061 0.939 29 H 0.072 0.928 30 H 0.332 0.668 31 H 0.038 0.962 32 H 0.035 0.965 33 H 0.030 0.970 34 H 0.262 0.738 35 H 0.052 0.948 36 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.239 -12.972 -6.429 14.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.090 4.090 3 N -0.245 5.245 4 C -0.085 4.085 5 C -0.153 4.153 6 C -0.033 4.033 7 H 0.040 0.960 8 N -0.307 5.307 9 C 0.108 3.892 10 H -0.012 1.012 11 C -0.168 4.168 12 C -0.578 4.578 13 H 0.078 0.922 14 C -0.186 4.186 15 N -0.560 5.560 16 Si 0.787 3.213 17 H -0.200 1.200 18 H -0.210 1.210 19 H -0.191 1.191 20 C -0.083 4.083 21 H 0.094 0.906 22 H 0.067 0.933 23 H 0.078 0.922 24 H 0.105 0.895 25 H 0.053 0.947 26 H 0.111 0.889 27 H 0.065 0.935 28 H 0.079 0.921 29 H 0.091 0.909 30 H 0.150 0.850 31 H 0.057 0.943 32 H 0.054 0.946 33 H 0.049 0.951 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -2.759 -12.829 -6.979 14.862 hybrid contribution -0.512 0.926 1.486 1.825 sum -3.271 -11.902 -5.492 13.510 Atomic orbital electron populations 1.21789 0.94092 1.02468 1.02126 1.22332 0.96856 0.88443 1.01354 1.65444 1.07171 1.14470 1.37426 1.23062 0.88382 0.95989 1.01051 1.22430 0.97630 0.96306 0.98904 1.22294 0.95415 0.96116 0.89478 0.96013 1.60825 1.37456 1.26927 1.05523 1.18944 0.92524 0.83376 0.94335 1.01241 1.21582 0.97893 0.99349 0.97976 1.21587 1.42713 0.96061 0.97471 0.92210 1.25751 0.94797 0.96393 1.01640 1.70081 1.46971 1.03666 1.35276 0.85515 0.78744 0.77061 0.79961 1.19998 1.21008 1.19123 1.23105 0.98246 0.94613 0.92330 0.90570 0.93341 0.92194 0.89454 0.94728 0.88888 0.93461 0.92051 0.90941 0.85004 0.94306 0.94557 0.95090 0.92859 0.92940 0.90302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.74 9.88 71.98 0.71 -2.03 16 2 C 0.04 0.80 5.64 86.30 0.49 1.29 16 3 N -0.52 -13.94 5.45 -881.46 -4.80 -18.74 16 4 C 0.04 1.14 6.49 86.45 0.56 1.70 16 5 C -0.11 -3.77 5.45 31.49 0.17 -3.60 16 6 C 0.08 2.89 3.37 45.81 0.15 3.04 16 7 H 0.02 0.92 7.49 -2.39 -0.02 0.90 16 8 N -0.68 -28.99 6.03 -468.75 -2.83 -31.82 16 9 C 0.22 11.24 2.47 44.17 0.11 11.35 16 10 H -0.03 -1.76 7.44 -2.39 -0.02 -1.78 16 11 C -0.11 -5.47 8.77 71.98 0.63 -4.84 16 12 C -0.54 -30.03 8.49 25.60 0.22 -29.81 16 13 H 0.06 3.24 7.68 -2.91 -0.02 3.22 16 14 C 0.01 0.76 5.28 84.65 0.45 1.20 16 15 N -0.92 -54.21 12.00 21.45 0.26 -53.95 16 16 Si 0.96 43.84 29.54 68.60 2.03 45.86 16 17 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 18 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 19 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 20 C 0.05 1.37 4.79 86.45 0.41 1.78 16 21 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 22 H 0.05 0.99 6.70 -2.39 -0.02 0.97 16 23 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 24 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 25 H 0.03 0.73 7.98 -2.38 -0.02 0.71 16 26 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 27 H 0.05 1.22 7.91 -2.39 -0.02 1.20 16 28 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 29 H 0.07 2.59 6.39 -2.39 -0.02 2.57 16 30 H 0.33 13.94 7.93 -89.69 -0.71 13.23 16 31 H 0.04 1.71 5.57 -2.39 -0.01 1.70 16 32 H 0.04 1.97 6.85 -2.39 -0.02 1.95 16 33 H 0.03 1.50 8.14 -2.38 -0.02 1.48 16 34 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 35 H 0.05 1.57 7.83 -2.39 -0.02 1.55 16 36 H 0.08 2.30 7.56 -2.38 -0.02 2.28 16 Total: -1.00 -60.28 279.48 -1.11 -61.39 By element: Atomic # 1 Polarization: 16.84 SS G_CDS: 0.33 Total: 17.17 kcal Atomic # 6 Polarization: -23.81 SS G_CDS: 3.90 Total: -19.91 kcal Atomic # 7 Polarization: -97.14 SS G_CDS: -7.37 Total: -104.51 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.86 kcal Total: -60.28 -1.11 -61.39 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389427485.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.876 kcal (2) G-P(sol) polarization free energy of solvation -60.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds