Wall clock time and date at job start Mon Mar 30 2020 02:19:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 110.41899 * 2 1 4 4 C 1.54905 * 110.37607 * 237.68923 * 2 1 3 5 5 C 1.55138 * 101.65114 * 204.10322 * 4 2 1 6 6 H 1.09000 * 110.85205 * 277.19480 * 5 4 2 7 7 C 1.53003 * 110.70631 * 154.03518 * 5 4 2 8 8 N 1.46901 * 109.47213 * 179.97438 * 7 5 4 9 9 C 1.46895 * 110.99820 * 179.97438 * 8 7 5 10 10 C 1.50706 * 109.47182 * 180.02562 * 9 8 7 11 11 H 1.08005 * 119.99758 * 0.02562 * 10 9 8 12 12 C 1.37871 * 120.00102 * 180.02562 * 10 9 8 13 13 N 1.31516 * 120.00217 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99766 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47483 * 269.99808 * 14 12 10 16 16 H 1.48499 * 109.47134 * 30.00322 * 14 12 10 17 17 H 1.48507 * 109.46904 * 150.00145 * 14 12 10 18 18 C 1.54313 * 103.02349 * 35.65114 * 5 4 2 19 19 N 1.47440 * 107.23245 * 337.71512 * 18 5 4 20 20 C 1.46895 * 111.00447 * 236.74205 * 19 18 5 21 21 H 1.08999 * 109.46909 * 299.14247 * 1 2 3 22 22 H 1.09005 * 109.46907 * 59.13849 * 1 2 3 23 23 H 1.08998 * 109.47174 * 179.14114 * 1 2 3 24 24 H 1.08993 * 110.99205 * 86.00682 * 4 2 1 25 25 H 1.08997 * 110.98773 * 322.18828 * 4 2 1 26 26 H 1.09006 * 109.47162 * 59.94506 * 7 5 4 27 27 H 1.09001 * 109.47081 * 299.94675 * 7 5 4 28 28 H 1.00902 * 111.00171 * 303.95481 * 8 7 5 29 29 H 1.09001 * 109.47613 * 60.00522 * 9 8 7 30 30 H 1.09006 * 109.47521 * 300.00140 * 9 8 7 31 31 H 0.97001 * 119.99646 * 359.97438 * 13 12 10 32 32 H 1.08993 * 109.89163 * 97.12262 * 18 5 4 33 33 H 1.09006 * 109.88836 * 218.15269 * 18 5 4 34 34 H 1.09001 * 109.47109 * 60.12521 * 20 19 18 35 35 H 1.09002 * 109.47341 * 180.12679 * 20 19 18 36 36 H 1.09004 * 109.47236 * 300.12974 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9103 1.0215 0.0000 4 6 2.0694 -0.7762 -1.2273 5 6 3.4786 -1.1995 -0.7357 6 1 4.1965 -0.3908 -0.8729 7 6 3.9466 -2.4640 -1.4588 8 7 5.2815 -2.8397 -0.9741 9 6 5.7638 -4.0529 -1.6475 10 6 7.1324 -4.4069 -1.1252 11 1 7.5972 -3.7923 -0.3683 12 6 7.7911 -5.5153 -1.6134 13 7 7.2254 -6.2634 -2.5354 14 14 9.4878 -5.9537 -0.9665 15 1 10.5220 -5.2823 -1.7942 16 1 9.6120 -5.5024 0.4429 17 1 9.6783 -7.4249 -1.0337 18 6 3.2536 -1.4807 0.7648 19 7 2.0448 -0.7408 1.1714 20 6 2.3357 0.1717 2.2851 21 1 -0.3633 0.5005 0.8976 22 1 -0.3633 0.5272 -0.8822 23 1 -0.3633 -1.0275 -0.0154 24 1 2.1389 -0.1271 -2.1001 25 1 1.4516 -1.6487 -1.4397 26 1 3.9891 -2.2746 -2.5315 27 1 3.2468 -3.2759 -1.2607 28 1 5.9346 -2.0790 -1.0873 29 1 5.8194 -3.8747 -2.7214 30 1 5.0762 -4.8755 -1.4507 31 1 6.3446 -6.0355 -2.8716 32 1 3.1056 -2.5488 0.9238 33 1 4.1131 -1.1359 1.3397 34 1 3.0958 0.8898 1.9774 35 1 1.4265 0.7031 2.5665 36 1 2.7007 -0.4007 3.1380 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396551539.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:10 Heat of formation + Delta-G solvation = -12.826018 kcal Electronic energy + Delta-G solvation = -14236.710933 eV Core-core repulsion = 11947.841829 eV Total energy + Delta-G solvation = -2288.869104 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.29718 -35.61175 -33.10439 -31.91217 -31.04310 -26.92319 -26.04310 -24.78830 -23.05623 -21.70502 -20.46638 -19.60721 -16.84038 -16.38103 -15.02273 -14.62593 -14.38231 -13.99324 -13.74364 -13.50483 -13.37331 -12.67917 -12.51038 -12.19976 -11.98135 -11.64049 -11.41581 -11.25615 -11.04411 -10.84540 -10.68936 -10.52984 -10.47737 -10.27816 -10.06208 -8.62155 -8.40791 -8.27251 -7.40713 -6.37366 -4.06192 3.44266 3.49035 3.64970 4.00804 4.51581 4.62575 4.68418 4.97452 5.17593 5.30581 5.37271 5.39920 5.40837 5.48166 5.52075 5.63139 5.79138 5.81082 5.87328 5.88410 5.95288 6.08597 6.17654 6.26717 6.38009 6.57579 6.94882 7.04991 7.14896 7.15773 7.78026 8.15452 8.45807 8.58302 8.87596 9.65814 11.02579 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.059612 B = 0.005398 C = 0.005085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 469.589923 B = 5186.185483 C = 5504.801710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.066 3.934 3 H 0.050 0.950 4 C -0.120 4.120 5 C -0.104 4.104 6 H 0.069 0.931 7 C 0.069 3.931 8 N -0.682 5.682 9 C 0.183 3.817 10 C -0.595 4.595 11 H 0.056 0.944 12 C 0.014 3.986 13 N -0.915 5.915 14 Si 1.076 2.924 15 H -0.289 1.289 16 H -0.288 1.288 17 H -0.284 1.284 18 C 0.060 3.940 19 N -0.535 5.535 20 C 0.022 3.978 21 H 0.051 0.949 22 H 0.054 0.946 23 H 0.062 0.938 24 H 0.069 0.931 25 H 0.077 0.923 26 H 0.018 0.982 27 H 0.066 0.934 28 H 0.329 0.671 29 H -0.025 1.025 30 H 0.018 0.982 31 H 0.267 0.733 32 H 0.084 0.916 33 H 0.056 0.944 34 H 0.024 0.976 35 H 0.062 0.938 36 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.774 13.165 4.752 17.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.042 4.042 3 H 0.068 0.932 4 C -0.159 4.159 5 C -0.124 4.124 6 H 0.087 0.913 7 C -0.061 4.061 8 N -0.312 5.312 9 C 0.056 3.944 10 C -0.633 4.633 11 H 0.074 0.926 12 C -0.190 4.190 13 N -0.551 5.551 14 Si 0.905 3.095 15 H -0.215 1.215 16 H -0.214 1.214 17 H -0.210 1.210 18 C -0.067 4.067 19 N -0.260 5.260 20 C -0.127 4.127 21 H 0.070 0.930 22 H 0.073 0.927 23 H 0.081 0.919 24 H 0.088 0.912 25 H 0.096 0.904 26 H 0.036 0.964 27 H 0.085 0.915 28 H 0.145 0.855 29 H -0.008 1.008 30 H 0.036 0.964 31 H 0.077 0.923 32 H 0.103 0.897 33 H 0.074 0.926 34 H 0.042 0.958 35 H 0.081 0.919 36 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -10.158 11.358 5.355 16.151 hybrid contribution -0.408 2.086 -1.016 2.356 sum -10.565 13.444 4.339 17.641 Atomic orbital electron populations 1.21683 0.94188 1.02338 1.00870 1.22565 0.95834 0.95752 0.90093 0.93166 1.22794 0.96124 1.00179 0.96774 1.22377 0.96043 0.98078 0.95900 0.91267 1.21888 0.93560 0.95407 0.95281 1.60564 1.01946 1.07984 1.60709 1.19659 0.96123 0.87569 0.91032 1.22031 1.01866 1.14065 1.25387 0.92580 1.25876 1.04886 0.93130 0.95085 1.70765 1.17329 1.39571 1.27431 0.83440 0.74248 0.76329 0.75528 1.21547 1.21379 1.20989 1.22750 0.90052 0.99848 0.94086 1.63564 1.29905 1.25646 1.06839 1.22502 0.99887 0.95484 0.94796 0.92981 0.92668 0.91917 0.91209 0.90415 0.96419 0.91520 0.85485 1.00761 0.96368 0.92279 0.89725 0.92591 0.95791 0.91911 0.91394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.33 9.59 37.16 0.36 -0.97 16 2 C 0.07 0.77 3.05 -66.19 -0.20 0.57 16 3 H 0.05 0.57 7.78 -51.93 -0.40 0.16 16 4 C -0.12 -1.49 5.94 -24.60 -0.15 -1.63 16 5 C -0.10 -1.53 3.13 -88.80 -0.28 -1.81 16 6 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 7 C 0.07 1.24 5.00 -3.82 -0.02 1.22 16 8 N -0.68 -14.87 6.30 -115.05 -0.72 -15.60 16 9 C 0.18 4.88 4.75 -4.98 -0.02 4.86 16 10 C -0.59 -17.33 9.32 -34.44 -0.32 -17.65 16 11 H 0.06 1.62 7.81 -52.48 -0.41 1.21 16 12 C 0.01 0.41 5.46 -17.82 -0.10 0.31 16 13 N -0.91 -28.40 13.65 55.43 0.76 -27.65 16 14 Si 1.08 25.70 29.90 -169.99 -5.08 20.62 16 15 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 16 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 17 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 18 C 0.06 0.90 6.31 -2.84 -0.02 0.88 16 19 N -0.54 -7.09 5.10 -231.60 -1.18 -8.27 16 20 C 0.02 0.25 9.12 60.06 0.55 0.80 16 21 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 22 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 23 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.08 0.98 7.96 -51.93 -0.41 0.57 16 26 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.07 1.24 8.06 -51.93 -0.42 0.82 16 28 H 0.33 6.92 8.72 -39.29 -0.34 6.58 16 29 H -0.03 -0.70 8.01 -51.93 -0.42 -1.12 16 30 H 0.02 0.52 8.01 -51.93 -0.42 0.10 16 31 H 0.27 8.28 7.22 -40.82 -0.29 7.99 16 32 H 0.08 1.44 7.76 -51.93 -0.40 1.04 16 33 H 0.06 0.85 7.59 -51.93 -0.39 0.46 16 34 H 0.02 0.26 8.10 -51.93 -0.42 -0.16 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 290.12 15.07 4.37 4.37 Total: -1.00 -30.74 290.12 -8.57 -39.31 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: -6.51 Total: 0.66 kcal Atomic # 6 Polarization: -13.23 SS G_CDS: -0.20 Total: -13.44 kcal Atomic # 7 Polarization: -50.37 SS G_CDS: -1.15 Total: -51.51 kcal Atomic # 14 Polarization: 25.70 SS G_CDS: -5.08 Total: 20.62 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -30.74 -8.57 -39.31 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396551539.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.481 kcal (2) G-P(sol) polarization free energy of solvation -30.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds