Wall clock time and date at job start Mon Mar 30 2020 02:19:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 110.41899 * 2 1 4 4 C 1.54905 * 110.37607 * 237.68923 * 2 1 3 5 5 C 1.55138 * 101.65114 * 204.10322 * 4 2 1 6 6 H 1.09000 * 110.85205 * 277.19480 * 5 4 2 7 7 C 1.53003 * 110.70631 * 154.03518 * 5 4 2 8 8 N 1.46901 * 109.47213 * 179.97438 * 7 5 4 9 9 C 1.46895 * 110.99820 * 179.97438 * 8 7 5 10 10 C 1.50706 * 109.47182 * 180.02562 * 9 8 7 11 11 H 1.08005 * 119.99758 * 0.02562 * 10 9 8 12 12 C 1.37871 * 120.00102 * 180.02562 * 10 9 8 13 13 N 1.31516 * 120.00217 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99766 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47483 * 269.99808 * 14 12 10 16 16 H 1.48499 * 109.47134 * 30.00322 * 14 12 10 17 17 H 1.48507 * 109.46904 * 150.00145 * 14 12 10 18 18 C 1.54313 * 103.02349 * 35.65114 * 5 4 2 19 19 N 1.47440 * 107.23245 * 337.71512 * 18 5 4 20 20 C 1.46895 * 111.00447 * 236.74205 * 19 18 5 21 21 H 1.08999 * 109.46909 * 299.14247 * 1 2 3 22 22 H 1.09005 * 109.46907 * 59.13849 * 1 2 3 23 23 H 1.08998 * 109.47174 * 179.14114 * 1 2 3 24 24 H 1.08993 * 110.99205 * 86.00682 * 4 2 1 25 25 H 1.08997 * 110.98773 * 322.18828 * 4 2 1 26 26 H 1.09006 * 109.47162 * 59.94506 * 7 5 4 27 27 H 1.09001 * 109.47081 * 299.94675 * 7 5 4 28 28 H 1.00902 * 111.00171 * 303.95481 * 8 7 5 29 29 H 1.09001 * 109.47613 * 60.00522 * 9 8 7 30 30 H 1.09006 * 109.47521 * 300.00140 * 9 8 7 31 31 H 0.97001 * 119.99646 * 359.97438 * 13 12 10 32 32 H 1.08993 * 109.89163 * 97.12262 * 18 5 4 33 33 H 1.09006 * 109.88836 * 218.15269 * 18 5 4 34 34 H 1.09001 * 109.47109 * 60.12521 * 20 19 18 35 35 H 1.09002 * 109.47341 * 180.12679 * 20 19 18 36 36 H 1.09004 * 109.47236 * 300.12974 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9103 1.0215 0.0000 4 6 2.0694 -0.7762 -1.2273 5 6 3.4786 -1.1995 -0.7357 6 1 4.1965 -0.3908 -0.8729 7 6 3.9466 -2.4640 -1.4588 8 7 5.2815 -2.8397 -0.9741 9 6 5.7638 -4.0529 -1.6475 10 6 7.1324 -4.4069 -1.1252 11 1 7.5972 -3.7923 -0.3683 12 6 7.7911 -5.5153 -1.6134 13 7 7.2254 -6.2634 -2.5354 14 14 9.4878 -5.9537 -0.9665 15 1 10.5220 -5.2823 -1.7942 16 1 9.6120 -5.5024 0.4429 17 1 9.6783 -7.4249 -1.0337 18 6 3.2536 -1.4807 0.7648 19 7 2.0448 -0.7408 1.1714 20 6 2.3357 0.1717 2.2851 21 1 -0.3633 0.5005 0.8976 22 1 -0.3633 0.5272 -0.8822 23 1 -0.3633 -1.0275 -0.0154 24 1 2.1389 -0.1271 -2.1001 25 1 1.4516 -1.6487 -1.4397 26 1 3.9891 -2.2746 -2.5315 27 1 3.2468 -3.2759 -1.2607 28 1 5.9346 -2.0790 -1.0873 29 1 5.8194 -3.8747 -2.7214 30 1 5.0762 -4.8755 -1.4507 31 1 6.3446 -6.0355 -2.8716 32 1 3.1056 -2.5488 0.9238 33 1 4.1131 -1.1359 1.3397 34 1 3.0958 0.8898 1.9774 35 1 1.4265 0.7031 2.5665 36 1 2.7007 -0.4007 3.1380 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396551539.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:10 Heat of formation + Delta-G solvation = -34.809938 kcal Electronic energy + Delta-G solvation = -14237.664227 eV Core-core repulsion = 11947.841829 eV Total energy + Delta-G solvation = -2289.822398 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.39012 -37.36555 -35.04710 -33.06982 -32.36253 -28.66562 -27.07172 -26.26880 -24.57658 -23.64564 -21.58176 -20.74112 -19.00985 -17.46192 -16.37721 -16.11030 -16.04186 -15.61272 -15.04989 -14.85281 -14.67823 -14.08623 -13.77244 -13.48387 -13.33941 -13.12348 -12.90171 -12.71008 -12.51514 -12.17449 -12.04089 -11.91796 -11.80574 -11.66021 -11.53746 -10.76877 -10.63835 -9.31668 -9.25007 -8.73416 -6.44439 1.52985 1.62736 1.81314 2.54824 3.01845 3.11609 3.28858 3.62573 3.78500 3.91382 4.24010 4.35366 4.39062 4.44071 4.48467 4.60089 4.63275 4.67199 4.74753 4.88351 4.92396 4.96269 4.99263 4.99429 5.04996 5.16714 5.34965 5.41783 5.68817 5.97713 6.02144 6.18325 6.35031 6.51885 6.64127 7.38175 8.66461 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.059612 B = 0.005398 C = 0.005085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 469.589923 B = 5186.185483 C = 5504.801710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.066 3.934 3 H 0.061 0.939 4 C -0.115 4.115 5 C -0.097 4.097 6 H 0.077 0.923 7 C 0.073 3.927 8 N -0.681 5.681 9 C 0.194 3.806 10 C -0.612 4.612 11 H 0.056 0.944 12 C -0.038 4.038 13 N -0.937 5.937 14 Si 1.127 2.873 15 H -0.270 1.270 16 H -0.270 1.270 17 H -0.282 1.282 18 C 0.065 3.935 19 N -0.547 5.547 20 C 0.022 3.978 21 H 0.059 0.941 22 H 0.072 0.928 23 H 0.051 0.949 24 H 0.088 0.912 25 H 0.072 0.928 26 H 0.020 0.980 27 H 0.055 0.945 28 H 0.335 0.665 29 H -0.044 1.044 30 H -0.006 1.006 31 H 0.253 0.747 32 H 0.057 0.943 33 H 0.050 0.950 34 H 0.028 0.972 35 H 0.080 0.920 36 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.755 14.772 5.362 19.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.042 4.042 3 H 0.079 0.921 4 C -0.154 4.154 5 C -0.117 4.117 6 H 0.095 0.905 7 C -0.057 4.057 8 N -0.311 5.311 9 C 0.066 3.934 10 C -0.650 4.650 11 H 0.075 0.925 12 C -0.235 4.235 13 N -0.574 5.574 14 Si 0.948 3.052 15 H -0.195 1.195 16 H -0.195 1.195 17 H -0.208 1.208 18 C -0.063 4.063 19 N -0.271 5.271 20 C -0.127 4.127 21 H 0.078 0.922 22 H 0.091 0.909 23 H 0.070 0.930 24 H 0.107 0.893 25 H 0.090 0.910 26 H 0.038 0.962 27 H 0.074 0.926 28 H 0.152 0.848 29 H -0.026 1.026 30 H 0.012 0.988 31 H 0.062 0.938 32 H 0.075 0.925 33 H 0.069 0.931 34 H 0.046 0.954 35 H 0.099 0.901 36 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -10.172 13.003 5.968 17.555 hybrid contribution -0.495 1.622 -1.199 2.077 sum -10.667 14.625 4.769 18.719 Atomic orbital electron populations 1.21657 0.92756 1.02069 1.02151 1.22658 0.96913 0.95800 0.88805 0.92062 1.22800 0.94137 1.00482 0.97946 1.22290 0.97691 0.96282 0.95430 0.90489 1.21918 0.91177 0.96810 0.95809 1.60444 1.03588 1.06817 1.60236 1.19365 0.95005 0.88933 0.90118 1.22393 1.02896 1.14296 1.25365 0.92533 1.27523 1.08557 0.92977 0.94420 1.70902 1.17046 1.40529 1.28917 0.82806 0.69944 0.76355 0.76113 1.19543 1.19480 1.20753 1.22570 0.90797 0.98658 0.94272 1.63552 1.28812 1.26789 1.07990 1.22549 1.00922 0.95233 0.93974 0.92236 0.90865 0.92976 0.89316 0.90956 0.96192 0.92640 0.84766 1.02648 0.98791 0.93767 0.92478 0.93129 0.95380 0.90144 0.91610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.24 9.59 71.98 0.69 -1.55 16 2 C 0.07 1.38 3.05 45.39 0.14 1.52 16 3 H 0.06 1.18 7.78 -2.39 -0.02 1.16 16 4 C -0.12 -2.62 5.94 31.98 0.19 -2.43 16 5 C -0.10 -2.75 3.13 -9.61 -0.03 -2.78 16 6 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 7 C 0.07 2.62 5.00 86.30 0.43 3.05 16 8 N -0.68 -30.01 6.30 -517.91 -3.26 -33.27 16 9 C 0.19 10.61 4.75 85.56 0.41 11.02 16 10 C -0.61 -35.91 9.32 25.60 0.24 -35.67 16 11 H 0.06 3.25 7.81 -2.91 -0.02 3.23 16 12 C -0.04 -2.21 5.46 84.65 0.46 -1.74 16 13 N -0.94 -59.03 13.65 21.45 0.29 -58.74 16 14 Si 1.13 50.93 29.90 68.60 2.05 52.99 16 15 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 16 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 17 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 18 C 0.06 1.92 6.31 86.64 0.55 2.46 16 19 N -0.55 -13.67 5.10 -886.66 -4.52 -18.19 16 20 C 0.02 0.44 9.12 127.69 1.16 1.60 16 21 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 22 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 23 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 24 H 0.09 1.70 8.14 -2.39 -0.02 1.69 16 25 H 0.07 1.74 7.96 -2.39 -0.02 1.72 16 26 H 0.02 0.72 8.14 -2.38 -0.02 0.70 16 27 H 0.06 2.11 8.06 -2.39 -0.02 2.09 16 28 H 0.34 14.05 8.72 -89.69 -0.78 13.26 16 29 H -0.04 -2.53 8.01 -2.39 -0.02 -2.55 16 30 H -0.01 -0.35 8.01 -2.38 -0.02 -0.37 16 31 H 0.25 16.22 7.22 -92.71 -0.67 15.55 16 32 H 0.06 1.99 7.76 -2.39 -0.02 1.97 16 33 H 0.05 1.52 7.59 -2.38 -0.02 1.50 16 34 H 0.03 0.55 8.10 -2.39 -0.02 0.53 16 35 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 Total: -1.00 -65.87 290.12 -0.86 -66.73 By element: Atomic # 1 Polarization: 14.66 SS G_CDS: 0.34 Total: 15.00 kcal Atomic # 6 Polarization: -28.76 SS G_CDS: 4.24 Total: -24.52 kcal Atomic # 7 Polarization: -102.70 SS G_CDS: -7.49 Total: -110.19 kcal Atomic # 14 Polarization: 50.93 SS G_CDS: 2.05 Total: 52.99 kcal Total: -65.87 -0.86 -66.73 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396551539.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.916 kcal (2) G-P(sol) polarization free energy of solvation -65.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds