Wall clock time and date at job start Mon Mar 30 2020 02:19:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 110.33014 * 2 1 4 4 C 1.54903 * 110.37236 * 122.25332 * 2 1 3 5 5 C 1.55268 * 101.59462 * 155.82046 * 4 2 1 6 6 H 1.08993 * 110.75800 * 82.93307 * 5 4 2 7 7 C 1.53004 * 110.74036 * 206.05273 * 5 4 2 8 8 N 1.46896 * 109.47118 * 180.15167 * 7 5 4 9 9 C 1.46899 * 110.99986 * 179.97438 * 8 7 5 10 10 C 1.50707 * 109.47194 * 179.97438 * 9 8 7 11 11 H 1.07993 * 119.99615 * 0.02562 * 10 9 8 12 12 C 1.37875 * 119.99916 * 180.02562 * 10 9 8 13 13 N 1.31508 * 119.99926 * 180.02562 * 12 10 9 14 14 Si 1.86801 * 120.00038 * 0.02562 * 12 10 9 15 15 H 1.48497 * 109.47490 * 89.99885 * 14 12 10 16 16 H 1.48497 * 109.46896 * 209.99746 * 14 12 10 17 17 H 1.48497 * 109.47021 * 329.99381 * 14 12 10 18 18 C 1.54320 * 103.08517 * 324.48794 * 5 4 2 19 19 N 1.47440 * 107.23371 * 22.20528 * 18 5 4 20 20 C 1.46900 * 111.00090 * 123.25746 * 19 18 5 21 21 H 1.08999 * 109.46680 * 179.29952 * 1 2 3 22 22 H 1.08998 * 109.47007 * 299.29812 * 1 2 3 23 23 H 1.08996 * 109.47351 * 59.30253 * 1 2 3 24 24 H 1.09000 * 110.99105 * 273.98904 * 4 2 1 25 25 H 1.08992 * 110.99149 * 37.81279 * 4 2 1 26 26 H 1.09004 * 109.46890 * 300.15373 * 7 5 4 27 27 H 1.09001 * 109.46679 * 60.15161 * 7 5 4 28 28 H 1.00901 * 111.00042 * 56.04525 * 8 7 5 29 29 H 1.08990 * 109.47759 * 300.00347 * 9 8 7 30 30 H 1.09007 * 109.46668 * 60.00640 * 9 8 7 31 31 H 0.96996 * 120.00362 * 180.02562 * 13 12 10 32 32 H 1.09001 * 109.88858 * 262.80245 * 18 5 4 33 33 H 1.08993 * 110.02497 * 141.68878 * 18 5 4 34 34 H 1.08997 * 109.47048 * 299.16204 * 20 19 18 35 35 H 1.08999 * 109.46927 * 59.15758 * 20 19 18 36 36 H 1.08999 * 109.47244 * 179.15265 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9088 1.0221 0.0000 4 6 2.0693 -0.7750 1.2281 5 6 3.4787 -1.2002 0.7345 6 1 4.1965 -0.3917 0.8725 7 6 3.9467 -2.4655 1.4563 8 7 5.2818 -2.8402 0.9718 9 6 5.7647 -4.0534 1.6447 10 6 7.1336 -4.4065 1.1225 11 1 7.5985 -3.7909 0.3667 12 6 7.7924 -5.5153 1.6097 13 7 8.9872 -5.8231 1.1544 14 14 6.9880 -6.5804 2.9165 15 1 6.1909 -7.6491 2.2625 16 1 8.0372 -7.1963 3.7679 17 1 6.0964 -5.7426 3.7581 18 6 3.2537 -1.4798 -0.7664 19 7 2.0448 -0.7396 -1.1721 20 6 2.3357 0.1742 -2.2850 21 1 -0.3632 -1.0276 -0.0126 22 1 -0.3633 0.5029 0.8962 23 1 -0.3634 0.5246 -0.8836 24 1 2.1389 -0.1249 2.1003 25 1 1.4516 -1.6472 1.4414 26 1 3.9890 -2.2771 2.5291 27 1 3.2468 -3.2771 1.2572 28 1 5.9347 -2.0794 1.0861 29 1 5.8198 -3.8758 2.7186 30 1 5.0776 -4.8763 1.4472 31 1 9.4506 -6.6034 1.4968 32 1 3.1057 -2.5478 -0.9265 33 1 4.1113 -1.1339 -1.3432 34 1 3.0865 0.8999 -1.9724 35 1 2.7128 -0.3959 -3.1340 36 1 1.4237 0.6964 -2.5742 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396551541.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:13 Heat of formation + Delta-G solvation = -4.840276 kcal Electronic energy + Delta-G solvation = -14246.328398 eV Core-core repulsion = 11957.805583 eV Total energy + Delta-G solvation = -2288.522816 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.28736 -35.60086 -32.83442 -31.92400 -31.22464 -27.66693 -26.06119 -25.10276 -23.07753 -21.14185 -20.40020 -19.61858 -16.76999 -16.36056 -15.12012 -14.83574 -14.23532 -14.11363 -13.95760 -13.38184 -13.32444 -12.69821 -12.42908 -12.39406 -12.12542 -11.74233 -11.55483 -11.24097 -11.14106 -10.86347 -10.81515 -10.53153 -10.43040 -10.23575 -9.77596 -9.28023 -8.58450 -8.26450 -7.45881 -6.05510 -4.03443 3.29461 3.36367 3.38824 4.01679 4.42457 4.59136 4.67994 4.97030 5.16578 5.27179 5.31349 5.37197 5.42115 5.47883 5.51169 5.62696 5.78795 5.82531 5.86621 5.87961 5.95254 6.07029 6.16100 6.25916 6.37433 6.57109 6.78661 7.02500 7.06295 7.15725 7.61046 7.89860 8.33319 8.65640 9.02424 9.56569 11.07855 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.056256 B = 0.005728 C = 0.005382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 497.608920 B = 4887.495215 C = 5201.347226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.066 3.934 3 H 0.050 0.950 4 C -0.120 4.120 5 C -0.104 4.104 6 H 0.070 0.930 7 C 0.068 3.932 8 N -0.680 5.680 9 C 0.164 3.836 10 C -0.516 4.516 11 H 0.079 0.921 12 C 0.068 3.932 13 N -0.901 5.901 14 Si 0.878 3.122 15 H -0.275 1.275 16 H -0.286 1.286 17 H -0.268 1.268 18 C 0.059 3.941 19 N -0.535 5.535 20 C 0.022 3.978 21 H 0.062 0.938 22 H 0.054 0.946 23 H 0.051 0.949 24 H 0.069 0.931 25 H 0.077 0.923 26 H 0.019 0.981 27 H 0.067 0.933 28 H 0.333 0.667 29 H -0.017 1.017 30 H 0.022 0.978 31 H 0.264 0.736 32 H 0.085 0.915 33 H 0.057 0.943 34 H 0.024 0.976 35 H 0.068 0.932 36 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.252 11.791 -0.978 19.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.043 4.043 3 H 0.068 0.932 4 C -0.159 4.159 5 C -0.124 4.124 6 H 0.088 0.912 7 C -0.063 4.063 8 N -0.310 5.310 9 C 0.036 3.964 10 C -0.554 4.554 11 H 0.097 0.903 12 C -0.133 4.133 13 N -0.540 5.540 14 Si 0.705 3.295 15 H -0.201 1.201 16 H -0.212 1.212 17 H -0.193 1.193 18 C -0.068 4.068 19 N -0.260 5.260 20 C -0.127 4.127 21 H 0.081 0.919 22 H 0.073 0.927 23 H 0.070 0.930 24 H 0.088 0.912 25 H 0.095 0.905 26 H 0.037 0.963 27 H 0.086 0.914 28 H 0.150 0.850 29 H 0.001 0.999 30 H 0.040 0.960 31 H 0.073 0.927 32 H 0.103 0.897 33 H 0.075 0.925 34 H 0.042 0.958 35 H 0.086 0.914 36 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -15.715 10.953 -1.701 19.231 hybrid contribution 0.604 0.273 1.791 1.910 sum -15.111 11.227 0.090 18.825 Atomic orbital electron populations 1.21684 0.94245 1.02338 1.00833 1.22562 0.95806 0.95792 0.90105 0.93167 1.22814 0.96135 1.00158 0.96765 1.22396 0.96050 0.98067 0.95900 0.91153 1.21908 0.93465 0.95537 0.95362 1.60482 1.02048 1.07908 1.60541 1.19993 0.96378 0.88466 0.91563 1.21067 0.99360 1.11577 1.23390 0.90331 1.24907 0.94732 0.97259 0.96448 1.69897 1.13251 1.27337 1.43511 0.86814 0.79330 0.81048 0.82268 1.20104 1.21222 1.19312 1.22763 0.90106 0.99875 0.94057 1.63567 1.29952 1.25619 1.06839 1.22505 0.99915 0.95469 0.94799 0.91917 0.92686 0.93021 0.91195 0.90451 0.96295 0.91425 0.84970 0.99931 0.96008 0.92654 0.89671 0.92470 0.95753 0.91358 0.91943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.29 9.59 37.16 0.36 -0.93 16 2 C 0.07 0.74 3.05 -66.18 -0.20 0.54 16 3 H 0.05 0.55 7.77 -51.93 -0.40 0.15 16 4 C -0.12 -1.41 5.96 -24.52 -0.15 -1.56 16 5 C -0.10 -1.46 3.13 -88.72 -0.28 -1.73 16 6 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 7 C 0.07 1.14 5.01 -3.82 -0.02 1.12 16 8 N -0.68 -14.07 6.30 -115.05 -0.72 -14.79 16 9 C 0.16 4.03 4.51 -4.97 -0.02 4.01 16 10 C -0.52 -14.93 9.87 -34.44 -0.34 -15.27 16 11 H 0.08 2.46 8.06 -52.49 -0.42 2.04 16 12 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 13 N -0.90 -27.93 13.96 55.43 0.77 -27.16 16 14 Si 0.88 21.81 27.47 -169.99 -4.67 17.14 16 15 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 16 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 17 H -0.27 -6.44 6.54 56.52 0.37 -6.07 16 18 C 0.06 0.86 6.31 -2.84 -0.02 0.84 16 19 N -0.54 -6.90 5.10 -231.60 -1.18 -8.08 16 20 C 0.02 0.24 9.12 60.06 0.55 0.79 16 21 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 22 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 23 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.08 0.92 7.96 -51.93 -0.41 0.51 16 26 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.07 1.16 8.06 -51.93 -0.42 0.74 16 28 H 0.33 6.70 8.72 -39.29 -0.34 6.36 16 29 H -0.02 -0.42 7.20 -51.93 -0.37 -0.79 16 30 H 0.02 0.55 7.57 -51.93 -0.39 0.15 16 31 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 32 H 0.09 1.39 7.77 -51.93 -0.40 0.99 16 33 H 0.06 0.85 7.58 -51.93 -0.39 0.46 16 34 H 0.02 0.26 8.09 -51.93 -0.42 -0.16 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 287.82 15.07 4.34 4.34 Total: -1.00 -30.35 287.82 -8.22 -38.57 By element: Atomic # 1 Polarization: 6.81 SS G_CDS: -6.53 Total: 0.28 kcal Atomic # 6 Polarization: -10.07 SS G_CDS: -0.22 Total: -10.29 kcal Atomic # 7 Polarization: -48.90 SS G_CDS: -1.13 Total: -50.03 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.67 Total: 17.14 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -30.35 -8.22 -38.57 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396551541.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.727 kcal (2) G-P(sol) polarization free energy of solvation -30.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds