Wall clock time and date at job start Mon Mar 30 2020 02:19:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 110.33014 * 2 1 4 4 C 1.54903 * 110.37236 * 122.25332 * 2 1 3 5 5 C 1.55268 * 101.59462 * 155.82046 * 4 2 1 6 6 H 1.08993 * 110.75800 * 82.93307 * 5 4 2 7 7 C 1.53004 * 110.74036 * 206.05273 * 5 4 2 8 8 N 1.46896 * 109.47118 * 180.15167 * 7 5 4 9 9 C 1.46899 * 110.99986 * 179.97438 * 8 7 5 10 10 C 1.50707 * 109.47194 * 179.97438 * 9 8 7 11 11 H 1.07993 * 119.99615 * 0.02562 * 10 9 8 12 12 C 1.37875 * 119.99916 * 180.02562 * 10 9 8 13 13 N 1.31508 * 119.99926 * 180.02562 * 12 10 9 14 14 Si 1.86801 * 120.00038 * 0.02562 * 12 10 9 15 15 H 1.48497 * 109.47490 * 89.99885 * 14 12 10 16 16 H 1.48497 * 109.46896 * 209.99746 * 14 12 10 17 17 H 1.48497 * 109.47021 * 329.99381 * 14 12 10 18 18 C 1.54320 * 103.08517 * 324.48794 * 5 4 2 19 19 N 1.47440 * 107.23371 * 22.20528 * 18 5 4 20 20 C 1.46900 * 111.00090 * 123.25746 * 19 18 5 21 21 H 1.08999 * 109.46680 * 179.29952 * 1 2 3 22 22 H 1.08998 * 109.47007 * 299.29812 * 1 2 3 23 23 H 1.08996 * 109.47351 * 59.30253 * 1 2 3 24 24 H 1.09000 * 110.99105 * 273.98904 * 4 2 1 25 25 H 1.08992 * 110.99149 * 37.81279 * 4 2 1 26 26 H 1.09004 * 109.46890 * 300.15373 * 7 5 4 27 27 H 1.09001 * 109.46679 * 60.15161 * 7 5 4 28 28 H 1.00901 * 111.00042 * 56.04525 * 8 7 5 29 29 H 1.08990 * 109.47759 * 300.00347 * 9 8 7 30 30 H 1.09007 * 109.46668 * 60.00640 * 9 8 7 31 31 H 0.96996 * 120.00362 * 180.02562 * 13 12 10 32 32 H 1.09001 * 109.88858 * 262.80245 * 18 5 4 33 33 H 1.08993 * 110.02497 * 141.68878 * 18 5 4 34 34 H 1.08997 * 109.47048 * 299.16204 * 20 19 18 35 35 H 1.08999 * 109.46927 * 59.15758 * 20 19 18 36 36 H 1.08999 * 109.47244 * 179.15265 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9088 1.0221 0.0000 4 6 2.0693 -0.7750 1.2281 5 6 3.4787 -1.2002 0.7345 6 1 4.1965 -0.3917 0.8725 7 6 3.9467 -2.4655 1.4563 8 7 5.2818 -2.8402 0.9718 9 6 5.7647 -4.0534 1.6447 10 6 7.1336 -4.4065 1.1225 11 1 7.5985 -3.7909 0.3667 12 6 7.7924 -5.5153 1.6097 13 7 8.9872 -5.8231 1.1544 14 14 6.9880 -6.5804 2.9165 15 1 6.1909 -7.6491 2.2625 16 1 8.0372 -7.1963 3.7679 17 1 6.0964 -5.7426 3.7581 18 6 3.2537 -1.4798 -0.7664 19 7 2.0448 -0.7396 -1.1721 20 6 2.3357 0.1742 -2.2850 21 1 -0.3632 -1.0276 -0.0126 22 1 -0.3633 0.5029 0.8962 23 1 -0.3634 0.5246 -0.8836 24 1 2.1389 -0.1249 2.1003 25 1 1.4516 -1.6472 1.4414 26 1 3.9890 -2.2771 2.5291 27 1 3.2468 -3.2771 1.2572 28 1 5.9347 -2.0794 1.0861 29 1 5.8198 -3.8758 2.7186 30 1 5.0776 -4.8763 1.4472 31 1 9.4506 -6.6034 1.4968 32 1 3.1057 -2.5478 -0.9265 33 1 4.1113 -1.1339 -1.3432 34 1 3.0865 0.8999 -1.9724 35 1 2.7128 -0.3959 -3.1340 36 1 1.4237 0.6964 -2.5742 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396551541.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:13 Heat of formation + Delta-G solvation = -27.185903 kcal Electronic energy + Delta-G solvation = -14247.297377 eV Core-core repulsion = 11957.805583 eV Total energy + Delta-G solvation = -2289.491795 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.32250 -37.19514 -34.77422 -33.14731 -32.44068 -29.43130 -27.05644 -26.36451 -24.37215 -23.04891 -21.48090 -20.69838 -18.92959 -17.39629 -16.75926 -16.05931 -15.90365 -15.58147 -14.98178 -14.85509 -14.44321 -14.34596 -13.92403 -13.38484 -13.29571 -13.12934 -12.87119 -12.64458 -12.53617 -12.12721 -11.98850 -11.85851 -11.73084 -11.60443 -11.54929 -11.29497 -10.81851 -9.26502 -9.12991 -8.31237 -6.35989 1.34747 1.36051 1.47096 2.33296 3.02887 3.06515 3.35763 3.69748 3.85358 3.98546 4.29325 4.41994 4.46488 4.49238 4.52222 4.65672 4.69426 4.75860 4.80767 4.94095 4.97614 5.01447 5.02420 5.07686 5.10976 5.22449 5.41657 5.45401 5.51201 5.93447 6.06527 6.21570 6.54284 6.64544 6.75481 7.29265 8.85604 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.056256 B = 0.005728 C = 0.005382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 497.608920 B = 4887.495215 C = 5201.347226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.064 3.936 3 H 0.058 0.942 4 C -0.113 4.113 5 C -0.099 4.099 6 H 0.073 0.927 7 C 0.071 3.929 8 N -0.688 5.688 9 C 0.175 3.825 10 C -0.529 4.529 11 H 0.037 0.963 12 C 0.008 3.992 13 N -0.948 5.948 14 Si 0.953 3.047 15 H -0.266 1.266 16 H -0.280 1.280 17 H -0.251 1.251 18 C 0.063 3.937 19 N -0.546 5.546 20 C 0.022 3.978 21 H 0.053 0.947 22 H 0.072 0.928 23 H 0.056 0.944 24 H 0.089 0.911 25 H 0.076 0.924 26 H 0.028 0.972 27 H 0.064 0.936 28 H 0.335 0.665 29 H -0.013 1.013 30 H 0.022 0.978 31 H 0.268 0.732 32 H 0.061 0.939 33 H 0.046 0.954 34 H 0.026 0.974 35 H 0.064 0.936 36 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.409 12.418 0.362 21.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.044 4.044 3 H 0.076 0.924 4 C -0.152 4.152 5 C -0.119 4.119 6 H 0.092 0.908 7 C -0.058 4.058 8 N -0.318 5.318 9 C 0.046 3.954 10 C -0.567 4.567 11 H 0.055 0.945 12 C -0.190 4.190 13 N -0.588 5.588 14 Si 0.776 3.224 15 H -0.191 1.191 16 H -0.205 1.205 17 H -0.175 1.175 18 C -0.065 4.065 19 N -0.271 5.271 20 C -0.127 4.127 21 H 0.072 0.928 22 H 0.091 0.909 23 H 0.075 0.925 24 H 0.107 0.893 25 H 0.094 0.906 26 H 0.047 0.953 27 H 0.083 0.917 28 H 0.152 0.848 29 H 0.005 0.995 30 H 0.041 0.959 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.064 0.936 34 H 0.045 0.955 35 H 0.083 0.917 36 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -17.895 11.609 -0.370 21.334 hybrid contribution 1.303 0.150 1.276 1.830 sum -16.592 11.759 0.907 20.357 Atomic orbital electron populations 1.21655 0.92811 1.02122 1.02032 1.22666 0.96880 0.95780 0.89038 0.92401 1.22811 0.94155 1.00543 0.97673 1.22323 0.97627 0.96691 0.95254 0.90825 1.21950 0.90983 0.96771 0.96142 1.60373 1.03766 1.07009 1.60686 1.19741 0.93909 0.90133 0.91610 1.21347 1.01443 1.11317 1.22642 0.94508 1.25891 0.95221 0.98815 0.99045 1.70049 1.15078 1.28312 1.45379 0.85637 0.78599 0.79066 0.79138 1.19085 1.20508 1.17472 1.22603 0.90566 0.98812 0.94505 1.63565 1.28929 1.26647 1.07950 1.22540 1.00840 0.95216 0.94094 0.92797 0.90882 0.92494 0.89287 0.90550 0.95338 0.91750 0.84773 0.99541 0.95949 0.92310 0.92052 0.93584 0.95548 0.91734 0.90233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.12 9.59 71.98 0.69 -1.43 16 2 C 0.06 1.29 3.05 45.39 0.14 1.43 16 3 H 0.06 1.09 7.77 -2.39 -0.02 1.08 16 4 C -0.11 -2.37 5.96 32.02 0.19 -2.17 16 5 C -0.10 -2.62 3.13 -9.57 -0.03 -2.65 16 6 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 7 C 0.07 2.29 5.01 86.31 0.43 2.72 16 8 N -0.69 -28.34 6.30 -517.92 -3.26 -31.60 16 9 C 0.17 8.50 4.51 85.56 0.39 8.89 16 10 C -0.53 -31.25 9.87 25.60 0.25 -31.00 16 11 H 0.04 2.41 8.06 -2.91 -0.02 2.38 16 12 C 0.01 0.46 5.47 84.66 0.46 0.92 16 13 N -0.95 -59.93 13.96 21.45 0.30 -59.63 16 14 Si 0.95 44.54 27.47 68.60 1.88 46.43 16 15 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 16 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 17 H -0.25 -10.95 6.54 99.48 0.65 -10.30 16 18 C 0.06 1.80 6.31 86.65 0.55 2.35 16 19 N -0.55 -13.31 5.10 -886.65 -4.52 -17.84 16 20 C 0.02 0.44 9.12 127.69 1.17 1.61 16 21 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 22 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 23 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 24 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 25 H 0.08 1.63 7.96 -2.39 -0.02 1.61 16 26 H 0.03 0.88 8.14 -2.38 -0.02 0.86 16 27 H 0.06 2.12 8.06 -2.39 -0.02 2.10 16 28 H 0.34 13.53 8.72 -89.69 -0.78 12.75 16 29 H -0.01 -0.62 7.20 -2.39 -0.02 -0.64 16 30 H 0.02 1.09 7.57 -2.38 -0.02 1.07 16 31 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 32 H 0.06 2.03 7.77 -2.39 -0.02 2.01 16 33 H 0.05 1.38 7.58 -2.39 -0.02 1.37 16 34 H 0.03 0.53 8.09 -2.39 -0.02 0.51 16 35 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 Total: -1.00 -65.47 287.82 -1.18 -66.65 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: 0.18 Total: 15.34 kcal Atomic # 6 Polarization: -23.58 SS G_CDS: 4.23 Total: -19.34 kcal Atomic # 7 Polarization: -101.59 SS G_CDS: -7.48 Total: -109.07 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 1.88 Total: 46.43 kcal Total: -65.47 -1.18 -66.65 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396551541.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.460 kcal (2) G-P(sol) polarization free energy of solvation -65.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds