Wall clock time and date at job start Mon Mar 30 2020 02:19:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.90414 * 2 1 4 4 C 1.53992 * 110.08376 * 121.20586 * 2 1 3 5 5 C 1.54596 * 105.13996 * 120.67273 * 4 2 1 6 6 H 1.09000 * 110.87696 * 263.52781 * 5 4 2 7 7 C 1.53003 * 110.72454 * 140.31719 * 5 4 2 8 8 N 1.46903 * 109.47090 * 180.02562 * 7 5 4 9 9 C 1.46893 * 110.99924 * 179.97438 * 8 7 5 10 10 C 1.50706 * 109.47176 * 179.97438 * 9 8 7 11 11 H 1.07999 * 119.99515 * 0.02562 * 10 9 8 12 12 C 1.37870 * 120.00176 * 180.02562 * 10 9 8 13 13 N 1.31520 * 119.99883 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 120.00043 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47293 * 89.99746 * 14 12 10 16 16 H 1.48504 * 109.47104 * 209.99992 * 14 12 10 17 17 H 1.48495 * 109.47249 * 329.99739 * 14 12 10 18 18 C 1.54934 * 102.92119 * 21.95538 * 5 4 2 19 19 N 1.47901 * 109.91785 * 238.89440 * 2 1 3 20 20 C 1.46906 * 110.99671 * 94.60376 * 19 2 1 21 21 H 1.09002 * 109.46783 * 179.65403 * 1 2 3 22 22 H 1.08995 * 109.47387 * 299.64825 * 1 2 3 23 23 H 1.08995 * 109.47440 * 59.65263 * 1 2 3 24 24 H 1.09001 * 110.31094 * 1.75168 * 4 2 1 25 25 H 1.09006 * 110.31148 * 239.58557 * 4 2 1 26 26 H 1.08993 * 109.47042 * 60.04600 * 7 5 4 27 27 H 1.09003 * 109.46902 * 300.03831 * 7 5 4 28 28 H 1.00893 * 110.99793 * 303.95597 * 8 7 5 29 29 H 1.09001 * 109.46739 * 60.00281 * 9 8 7 30 30 H 1.09000 * 109.47767 * 300.00540 * 9 8 7 31 31 H 0.97004 * 119.99507 * 180.02562 * 13 12 10 32 32 H 1.09000 * 110.66342 * 81.02282 * 18 5 4 33 33 H 1.09003 * 110.66951 * 204.15231 * 18 5 4 34 34 H 1.08997 * 109.46697 * 177.52288 * 20 19 2 35 35 H 1.08999 * 109.46881 * 297.52091 * 20 19 2 36 36 H 1.09001 * 109.47100 * 57.52319 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9011 1.0249 0.0000 4 6 2.0588 -0.7493 1.2370 5 6 2.9124 -1.9082 0.6728 6 1 2.3331 -2.8303 0.6260 7 6 4.1767 -2.1073 1.5111 8 7 4.9663 -3.2125 0.9514 9 6 6.1909 -3.4327 1.7322 10 6 6.9728 -4.5716 1.1298 11 1 6.5976 -5.0806 0.2543 12 6 8.1669 -4.9637 1.6965 13 7 8.6235 -4.3442 2.7630 14 14 9.1363 -6.3750 0.9494 15 1 10.0790 -5.8442 -0.0678 16 1 9.8997 -7.0707 2.0165 17 1 8.2010 -7.3320 0.3058 18 6 3.2708 -1.4132 -0.7509 19 7 2.0338 -0.7184 -1.1906 20 6 2.3167 0.2159 -2.2885 21 1 -0.3633 -1.0277 -0.0062 22 1 -0.3634 0.5083 0.8931 23 1 -0.3634 0.5192 -0.8868 24 1 1.2291 -1.1420 1.8249 25 1 2.6748 -0.0873 1.8457 26 1 3.8983 -2.3438 2.5380 27 1 4.7700 -1.1930 1.4967 28 1 4.4168 -4.0567 0.8942 29 1 5.9267 -3.6778 2.7609 30 1 6.7981 -2.5276 1.7189 31 1 9.4639 -4.6199 3.1614 32 1 4.1105 -0.7190 -0.7168 33 1 3.4928 -2.2552 -1.4066 34 1 2.7270 -0.3331 -3.1360 35 1 1.3943 0.7126 -2.5895 36 1 3.0385 0.9612 -1.9545 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396551543.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:16 Heat of formation + Delta-G solvation = -8.981515 kcal Electronic energy + Delta-G solvation = -14204.495531 eV Core-core repulsion = 11915.793138 eV Total energy + Delta-G solvation = -2288.702393 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.21706 -35.43866 -32.88926 -31.90107 -31.01579 -27.18895 -26.00960 -24.95445 -23.04928 -21.34204 -20.28215 -19.75362 -16.45300 -15.57370 -15.48032 -14.70165 -14.57257 -14.18147 -13.69924 -13.36161 -13.14578 -12.58594 -12.45310 -12.20672 -11.88644 -11.55872 -11.24271 -11.13403 -11.04384 -10.86660 -10.81108 -10.49394 -10.41261 -10.24616 -9.81352 -9.15458 -8.46685 -8.36056 -7.26350 -6.02130 -4.04017 3.33263 3.38809 3.42879 4.07166 4.43922 4.70580 4.77545 4.99839 5.24256 5.33424 5.34103 5.43903 5.46796 5.57512 5.65755 5.72690 5.84374 5.88076 5.90749 5.98709 6.05151 6.13023 6.23563 6.30347 6.44098 6.61331 7.01903 7.15127 7.26912 7.43810 7.80003 8.14281 8.41680 8.63518 9.05603 9.61009 11.09089 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.059733 B = 0.005343 C = 0.005094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 468.642061 B = 5238.899330 C = 5494.855789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.060 3.940 3 H 0.048 0.952 4 C -0.123 4.123 5 C -0.086 4.086 6 H 0.078 0.922 7 C 0.068 3.932 8 N -0.689 5.689 9 C 0.193 3.807 10 C -0.513 4.513 11 H 0.062 0.938 12 C 0.055 3.945 13 N -0.899 5.899 14 Si 0.899 3.101 15 H -0.280 1.280 16 H -0.287 1.287 17 H -0.273 1.273 18 C 0.055 3.945 19 N -0.524 5.524 20 C 0.018 3.982 21 H 0.061 0.939 22 H 0.054 0.946 23 H 0.050 0.950 24 H 0.070 0.930 25 H 0.067 0.933 26 H 0.019 0.981 27 H 0.062 0.938 28 H 0.328 0.672 29 H -0.015 1.015 30 H 0.026 0.974 31 H 0.261 0.739 32 H 0.046 0.954 33 H 0.087 0.913 34 H 0.068 0.932 35 H 0.062 0.938 36 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.748 8.446 -4.927 16.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.048 4.048 3 H 0.066 0.934 4 C -0.162 4.162 5 C -0.105 4.105 6 H 0.096 0.904 7 C -0.063 4.063 8 N -0.319 5.319 9 C 0.067 3.933 10 C -0.552 4.552 11 H 0.081 0.919 12 C -0.146 4.146 13 N -0.539 5.539 14 Si 0.727 3.273 15 H -0.206 1.206 16 H -0.213 1.213 17 H -0.198 1.198 18 C -0.073 4.073 19 N -0.249 5.249 20 C -0.131 4.131 21 H 0.080 0.920 22 H 0.073 0.927 23 H 0.069 0.931 24 H 0.089 0.911 25 H 0.085 0.915 26 H 0.038 0.962 27 H 0.080 0.920 28 H 0.145 0.855 29 H 0.003 0.997 30 H 0.044 0.956 31 H 0.071 0.929 32 H 0.065 0.935 33 H 0.106 0.894 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -13.658 8.487 -5.473 16.986 hybrid contribution 0.948 -0.454 0.775 1.306 sum -12.710 8.033 -4.698 15.753 Atomic orbital electron populations 1.21736 0.94315 1.02226 1.00774 1.22380 0.95975 0.96008 0.90470 0.93439 1.22518 0.99527 0.97439 0.96726 1.22074 0.95908 0.97923 0.94636 0.90370 1.21906 0.92854 0.96776 0.94745 1.60650 1.08166 1.08025 1.55088 1.19546 0.86135 0.96952 0.90687 1.21199 1.05381 1.15855 1.12737 0.91934 1.24996 0.97556 0.97085 0.94988 1.69972 1.21080 1.41514 1.21307 0.86477 0.79975 0.82130 0.78689 1.20628 1.21320 1.19822 1.23142 0.89871 0.98235 0.96008 1.64717 1.27814 1.26000 1.06341 1.22473 1.00147 0.95243 0.95231 0.91964 0.92745 0.93107 0.91103 0.91460 0.96246 0.91995 0.85526 0.99683 0.95567 0.92942 0.93549 0.89443 0.91324 0.91874 0.95634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.34 9.33 37.16 0.35 -1.00 16 2 C 0.06 0.72 3.08 -66.65 -0.20 0.51 16 3 H 0.05 0.55 7.70 -51.93 -0.40 0.16 16 4 C -0.12 -1.54 6.15 -25.37 -0.16 -1.70 16 5 C -0.09 -1.27 3.25 -88.76 -0.29 -1.56 16 6 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 7 C 0.07 1.21 5.00 -3.82 -0.02 1.19 16 8 N -0.69 -14.86 6.30 -115.06 -0.73 -15.59 16 9 C 0.19 5.15 5.44 -4.98 -0.03 5.12 16 10 C -0.51 -14.71 9.32 -34.44 -0.32 -15.04 16 11 H 0.06 1.76 7.81 -52.49 -0.41 1.35 16 12 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 13 N -0.90 -27.17 13.29 55.43 0.74 -26.44 16 14 Si 0.90 21.87 29.54 -169.99 -5.02 16.85 16 15 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 16 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 17 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 18 C 0.05 0.81 5.82 -1.90 -0.01 0.80 16 19 N -0.52 -6.93 5.18 -230.79 -1.20 -8.12 16 20 C 0.02 0.20 9.41 60.07 0.57 0.77 16 21 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 22 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 23 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 24 H 0.07 0.81 7.69 -51.93 -0.40 0.41 16 25 H 0.07 0.83 7.85 -51.93 -0.41 0.42 16 26 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.06 1.14 8.10 -51.93 -0.42 0.72 16 28 H 0.33 6.80 8.72 -39.30 -0.34 6.46 16 29 H -0.01 -0.41 8.14 -51.93 -0.42 -0.84 16 30 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 32 H 0.05 0.73 7.87 -51.93 -0.41 0.33 16 33 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.03 0.28 7.99 -51.93 -0.42 -0.13 16 LS Contribution 291.35 15.07 4.39 4.39 Total: -1.00 -29.83 291.35 -8.59 -38.43 By element: Atomic # 1 Polarization: 6.45 SS G_CDS: -6.57 Total: -0.12 kcal Atomic # 6 Polarization: -9.19 SS G_CDS: -0.21 Total: -9.40 kcal Atomic # 7 Polarization: -48.96 SS G_CDS: -1.19 Total: -50.15 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -29.83 -8.59 -38.43 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396551543.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.444 kcal (2) G-P(sol) polarization free energy of solvation -29.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds