Wall clock time and date at job start Mon Mar 30 2020 02:19:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.90414 * 2 1 4 4 C 1.53992 * 110.08376 * 121.20586 * 2 1 3 5 5 C 1.54596 * 105.13996 * 120.67273 * 4 2 1 6 6 H 1.09000 * 110.87696 * 263.52781 * 5 4 2 7 7 C 1.53003 * 110.72454 * 140.31719 * 5 4 2 8 8 N 1.46903 * 109.47090 * 180.02562 * 7 5 4 9 9 C 1.46893 * 110.99924 * 179.97438 * 8 7 5 10 10 C 1.50706 * 109.47176 * 179.97438 * 9 8 7 11 11 H 1.07999 * 119.99515 * 0.02562 * 10 9 8 12 12 C 1.37870 * 120.00176 * 180.02562 * 10 9 8 13 13 N 1.31520 * 119.99883 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 120.00043 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47293 * 89.99746 * 14 12 10 16 16 H 1.48504 * 109.47104 * 209.99992 * 14 12 10 17 17 H 1.48495 * 109.47249 * 329.99739 * 14 12 10 18 18 C 1.54934 * 102.92119 * 21.95538 * 5 4 2 19 19 N 1.47901 * 109.91785 * 238.89440 * 2 1 3 20 20 C 1.46906 * 110.99671 * 94.60376 * 19 2 1 21 21 H 1.09002 * 109.46783 * 179.65403 * 1 2 3 22 22 H 1.08995 * 109.47387 * 299.64825 * 1 2 3 23 23 H 1.08995 * 109.47440 * 59.65263 * 1 2 3 24 24 H 1.09001 * 110.31094 * 1.75168 * 4 2 1 25 25 H 1.09006 * 110.31148 * 239.58557 * 4 2 1 26 26 H 1.08993 * 109.47042 * 60.04600 * 7 5 4 27 27 H 1.09003 * 109.46902 * 300.03831 * 7 5 4 28 28 H 1.00893 * 110.99793 * 303.95597 * 8 7 5 29 29 H 1.09001 * 109.46739 * 60.00281 * 9 8 7 30 30 H 1.09000 * 109.47767 * 300.00540 * 9 8 7 31 31 H 0.97004 * 119.99507 * 180.02562 * 13 12 10 32 32 H 1.09000 * 110.66342 * 81.02282 * 18 5 4 33 33 H 1.09003 * 110.66951 * 204.15231 * 18 5 4 34 34 H 1.08997 * 109.46697 * 177.52288 * 20 19 2 35 35 H 1.08999 * 109.46881 * 297.52091 * 20 19 2 36 36 H 1.09001 * 109.47100 * 57.52319 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9011 1.0249 0.0000 4 6 2.0588 -0.7493 1.2370 5 6 2.9124 -1.9082 0.6728 6 1 2.3331 -2.8303 0.6260 7 6 4.1767 -2.1073 1.5111 8 7 4.9663 -3.2125 0.9514 9 6 6.1909 -3.4327 1.7322 10 6 6.9728 -4.5716 1.1298 11 1 6.5976 -5.0806 0.2543 12 6 8.1669 -4.9637 1.6965 13 7 8.6235 -4.3442 2.7630 14 14 9.1363 -6.3750 0.9494 15 1 10.0790 -5.8442 -0.0678 16 1 9.8997 -7.0707 2.0165 17 1 8.2010 -7.3320 0.3058 18 6 3.2708 -1.4132 -0.7509 19 7 2.0338 -0.7184 -1.1906 20 6 2.3167 0.2159 -2.2885 21 1 -0.3633 -1.0277 -0.0062 22 1 -0.3634 0.5083 0.8931 23 1 -0.3634 0.5192 -0.8868 24 1 1.2291 -1.1420 1.8249 25 1 2.6748 -0.0873 1.8457 26 1 3.8983 -2.3438 2.5380 27 1 4.7700 -1.1930 1.4967 28 1 4.4168 -4.0567 0.8942 29 1 5.9267 -3.6778 2.7609 30 1 6.7981 -2.5276 1.7189 31 1 9.4639 -4.6199 3.1614 32 1 4.1105 -0.7190 -0.7168 33 1 3.4928 -2.2552 -1.4066 34 1 2.7270 -0.3331 -3.1360 35 1 1.3943 0.7126 -2.5895 36 1 3.0385 0.9612 -1.9545 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396551543.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:15 Heat of formation + Delta-G solvation = -30.140848 kcal Electronic energy + Delta-G solvation = -14205.413069 eV Core-core repulsion = 11915.793138 eV Total energy + Delta-G solvation = -2289.619931 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.31211 -37.14337 -34.81657 -33.12903 -32.31044 -28.99830 -27.07293 -26.33773 -24.45831 -23.29238 -21.47574 -20.81775 -18.56457 -16.93571 -16.70838 -16.44924 -16.04137 -15.43400 -14.95951 -14.83207 -14.52686 -14.13675 -13.61390 -13.41817 -13.22438 -13.14846 -12.81731 -12.66931 -12.50824 -12.17809 -12.06819 -11.98802 -11.78421 -11.58602 -11.41479 -11.17478 -10.66398 -9.39912 -9.11276 -8.23210 -6.34599 1.41499 1.43423 1.54803 2.40034 3.04662 3.10252 3.45912 3.70261 3.85942 4.09405 4.16484 4.41520 4.49631 4.53769 4.54615 4.67252 4.70327 4.78345 4.90183 4.94188 4.99084 5.02719 5.05969 5.11127 5.24913 5.27017 5.34504 5.45144 5.61089 5.96689 6.01073 6.16455 6.43847 6.71760 6.88768 7.36685 8.88606 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.059733 B = 0.005343 C = 0.005094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 468.642061 B = 5238.899330 C = 5494.855789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.058 3.942 3 H 0.052 0.948 4 C -0.119 4.119 5 C -0.079 4.079 6 H 0.080 0.920 7 C 0.071 3.929 8 N -0.686 5.686 9 C 0.208 3.792 10 C -0.536 4.536 11 H 0.065 0.935 12 C 0.000 4.000 13 N -0.936 5.936 14 Si 0.975 3.025 15 H -0.273 1.273 16 H -0.281 1.281 17 H -0.262 1.262 18 C 0.058 3.942 19 N -0.531 5.531 20 C 0.017 3.983 21 H 0.056 0.944 22 H 0.070 0.930 23 H 0.057 0.943 24 H 0.086 0.914 25 H 0.068 0.932 26 H 0.020 0.980 27 H 0.053 0.947 28 H 0.335 0.665 29 H -0.040 1.040 30 H -0.003 1.003 31 H 0.265 0.735 32 H 0.032 0.968 33 H 0.074 0.926 34 H 0.068 0.932 35 H 0.081 0.919 36 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.779 8.284 -5.742 17.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.050 4.050 3 H 0.070 0.930 4 C -0.158 4.158 5 C -0.099 4.099 6 H 0.098 0.902 7 C -0.059 4.059 8 N -0.316 5.316 9 C 0.080 3.920 10 C -0.574 4.574 11 H 0.084 0.916 12 C -0.198 4.198 13 N -0.576 5.576 14 Si 0.799 3.201 15 H -0.199 1.199 16 H -0.206 1.206 17 H -0.186 1.186 18 C -0.070 4.070 19 N -0.255 5.255 20 C -0.132 4.132 21 H 0.075 0.925 22 H 0.089 0.911 23 H 0.076 0.924 24 H 0.104 0.896 25 H 0.086 0.914 26 H 0.038 0.962 27 H 0.071 0.929 28 H 0.152 0.848 29 H -0.022 1.022 30 H 0.015 0.985 31 H 0.074 0.926 32 H 0.050 0.950 33 H 0.092 0.908 34 H 0.087 0.913 35 H 0.099 0.901 36 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -14.719 8.338 -6.299 18.052 hybrid contribution 1.234 -0.341 1.037 1.648 sum -13.486 7.997 -5.262 16.538 Atomic orbital electron populations 1.21701 0.92615 1.02214 1.01971 1.22476 0.97260 0.95854 0.89414 0.92997 1.22520 0.99543 0.96456 0.97260 1.21962 0.94508 0.99144 0.94239 0.90160 1.21938 0.93684 0.94875 0.95360 1.60521 1.07531 1.09252 1.54316 1.19201 0.87769 0.95156 0.89878 1.21555 1.06174 1.16575 1.13065 0.91649 1.25974 0.98608 0.99901 0.95275 1.70100 1.21676 1.43166 1.22651 0.85305 0.78354 0.78541 0.77925 1.19876 1.20648 1.18637 1.23000 0.90422 0.97753 0.95802 1.64738 1.26507 1.26984 1.07267 1.22534 1.01107 0.94952 0.94597 0.92533 0.91092 0.92439 0.89576 0.91357 0.96186 0.92884 0.84759 1.02219 0.98459 0.92606 0.94976 0.90777 0.91288 0.90056 0.95699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.22 9.33 71.98 0.67 -1.54 16 2 C 0.06 1.26 3.08 45.06 0.14 1.40 16 3 H 0.05 1.09 7.70 -2.39 -0.02 1.08 16 4 C -0.12 -2.77 6.15 31.47 0.19 -2.57 16 5 C -0.08 -2.28 3.25 -9.59 -0.03 -2.31 16 6 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 7 C 0.07 2.57 5.00 86.30 0.43 3.01 16 8 N -0.69 -30.04 6.30 -517.93 -3.26 -33.30 16 9 C 0.21 11.40 5.44 85.56 0.47 11.87 16 10 C -0.54 -31.04 9.32 25.60 0.24 -30.80 16 11 H 0.07 3.67 7.81 -2.91 -0.02 3.65 16 12 C 0.00 0.03 5.46 84.65 0.46 0.49 16 13 N -0.94 -57.27 13.29 21.45 0.28 -56.99 16 14 Si 0.97 44.66 29.54 68.60 2.03 46.69 16 15 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 16 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 17 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 18 C 0.06 1.70 5.82 86.65 0.50 2.21 16 19 N -0.53 -13.21 5.18 -884.08 -4.58 -17.79 16 20 C 0.02 0.35 9.41 127.69 1.20 1.55 16 21 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 22 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 23 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 24 H 0.09 1.75 7.69 -2.39 -0.02 1.73 16 25 H 0.07 1.58 7.85 -2.38 -0.02 1.56 16 26 H 0.02 0.72 8.14 -2.39 -0.02 0.71 16 27 H 0.05 2.00 8.10 -2.39 -0.02 1.98 16 28 H 0.34 13.94 8.72 -89.70 -0.78 13.15 16 29 H -0.04 -2.34 8.14 -2.39 -0.02 -2.36 16 30 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 31 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 32 H 0.03 1.02 7.87 -2.39 -0.02 1.00 16 33 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 34 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.02 0.52 7.99 -2.39 -0.02 0.50 16 Total: -1.00 -63.53 291.35 -1.02 -64.56 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: 0.24 Total: 13.55 kcal Atomic # 6 Polarization: -20.99 SS G_CDS: 4.28 Total: -16.71 kcal Atomic # 7 Polarization: -100.52 SS G_CDS: -7.56 Total: -108.09 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Total: -63.53 -1.02 -64.56 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396551543.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.415 kcal (2) G-P(sol) polarization free energy of solvation -63.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds