Wall clock time and date at job start Mon Mar 30 2020 02:19:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 110.45827 * 2 1 4 4 C 1.54371 * 110.41141 * 237.58316 * 2 1 3 5 5 C 1.54261 * 105.05997 * 217.37001 * 4 2 1 6 6 H 1.09000 * 110.41172 * 118.94372 * 5 4 2 7 7 C 1.53004 * 110.32098 * 241.10273 * 5 4 2 8 8 N 1.46901 * 109.46916 * 182.08884 * 7 5 4 9 9 C 1.46905 * 110.99870 * 180.02562 * 8 7 5 10 10 C 1.50697 * 109.47066 * 180.02562 * 9 8 7 11 11 H 1.08000 * 120.00144 * 0.02562 * 10 9 8 12 12 C 1.37881 * 120.00103 * 179.97438 * 10 9 8 13 13 N 1.31510 * 119.99826 * 0.02562 * 12 10 9 14 14 Si 1.86796 * 120.00043 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.46586 * 90.00817 * 14 12 10 16 16 H 1.48496 * 109.47489 * 210.00373 * 14 12 10 17 17 H 1.48495 * 109.47395 * 330.00672 * 14 12 10 18 18 C 1.54374 * 105.05999 * 359.97438 * 5 4 2 19 19 N 1.48557 * 104.59803 * 23.85351 * 18 5 4 20 20 C 1.46892 * 111.00259 * 200.95985 * 19 18 5 21 21 H 1.09000 * 109.47073 * 299.04438 * 1 2 3 22 22 H 1.08998 * 109.47222 * 59.04149 * 1 2 3 23 23 H 1.09004 * 109.47460 * 179.04656 * 1 2 3 24 24 H 1.08999 * 110.32284 * 98.47096 * 4 2 1 25 25 H 1.09001 * 110.32509 * 336.26081 * 4 2 1 26 26 H 1.09004 * 109.46889 * 62.09265 * 7 5 4 27 27 H 1.08995 * 109.47384 * 302.08905 * 7 5 4 28 28 H 1.00901 * 111.00067 * 303.95263 * 8 7 5 29 29 H 1.09001 * 109.46798 * 300.00327 * 9 8 7 30 30 H 1.08998 * 109.46961 * 60.00043 * 9 8 7 31 31 H 0.96997 * 120.00392 * 179.97438 * 13 12 10 32 32 H 1.09001 * 110.41307 * 142.63712 * 18 5 4 33 33 H 1.09005 * 110.41375 * 265.07359 * 18 5 4 34 34 H 1.08996 * 109.47581 * 59.87301 * 20 19 18 35 35 H 1.09003 * 109.46959 * 179.87713 * 20 19 18 36 36 H 1.09002 * 109.47128 * 299.87044 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9110 1.0213 0.0000 4 6 2.0684 -0.7756 -1.2213 5 6 3.3177 -1.5189 -0.7052 6 1 3.1879 -2.5964 -0.8065 7 6 4.5619 -1.0605 -1.4686 8 7 5.7310 -1.8149 -0.9975 9 6 6.9472 -1.4000 -1.7096 10 6 8.1226 -2.1942 -1.2011 11 1 7.9804 -2.9335 -0.4268 12 6 9.3794 -1.9778 -1.7251 13 7 9.5525 -1.0778 -2.6684 14 14 10.8366 -2.9617 -1.0943 15 1 10.9848 -4.1993 -1.9016 16 1 12.0718 -2.1455 -1.2085 17 1 10.6115 -3.3227 0.3284 18 6 3.4294 -1.1293 0.7844 19 7 2.0486 -0.7454 1.1755 20 6 2.0577 0.1027 2.3748 21 1 -0.3633 0.4989 0.8984 22 1 -0.3633 0.5286 -0.8812 23 1 -0.3634 -1.0275 -0.0171 24 1 2.3415 -0.0842 -2.0185 25 1 1.3235 -1.4881 -1.5758 26 1 4.7225 0.0037 -1.2959 27 1 4.4202 -1.2383 -2.5346 28 1 5.8458 -1.7181 0.0003 29 1 6.8221 -1.5798 -2.7773 30 1 7.1241 -0.3382 -1.5382 31 1 10.4367 -0.9252 -3.0368 32 1 3.7693 -1.9798 1.3753 33 1 4.1078 -0.2849 0.9067 34 1 2.6309 1.0081 2.1753 35 1 1.0345 0.3710 2.6379 36 1 2.5145 -0.4417 3.2014 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396551545.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:18 Heat of formation + Delta-G solvation = -9.223579 kcal Electronic energy + Delta-G solvation = -14238.674218 eV Core-core repulsion = 11949.961328 eV Total energy + Delta-G solvation = -2288.712890 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.30440 -35.45173 -32.91863 -31.91404 -31.05874 -27.22610 -26.05794 -24.99115 -23.12966 -21.39977 -20.25994 -19.71366 -16.52008 -15.58574 -15.50761 -15.01407 -14.57113 -14.23535 -13.63688 -13.23211 -13.05415 -12.85417 -12.47112 -12.18051 -11.81897 -11.76354 -11.26709 -11.19623 -11.13437 -10.93064 -10.71639 -10.52809 -10.38719 -10.24048 -9.81275 -9.15968 -8.49652 -8.47005 -7.28507 -6.02595 -4.04584 3.32966 3.38471 3.42436 4.00800 4.43460 4.65729 4.75520 5.02828 5.14737 5.28693 5.33316 5.40710 5.42239 5.48691 5.65362 5.66836 5.79653 5.80067 5.87185 5.88328 6.01590 6.12013 6.18342 6.23476 6.44982 6.59468 6.90136 7.05170 7.26470 7.42622 7.79487 8.13723 8.40640 8.62676 9.04873 9.60405 11.08637 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.060292 B = 0.005390 C = 0.005140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 464.298222 B = 5193.698149 C = 5445.641853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.055 3.945 3 H 0.049 0.951 4 C -0.115 4.115 5 C -0.088 4.088 6 H 0.087 0.913 7 C 0.067 3.933 8 N -0.690 5.690 9 C 0.193 3.807 10 C -0.514 4.514 11 H 0.062 0.938 12 C 0.055 3.945 13 N -0.899 5.899 14 Si 0.900 3.100 15 H -0.280 1.280 16 H -0.287 1.287 17 H -0.273 1.273 18 C 0.037 3.963 19 N -0.513 5.513 20 C 0.014 3.986 21 H 0.050 0.950 22 H 0.056 0.944 23 H 0.063 0.937 24 H 0.068 0.932 25 H 0.072 0.928 26 H 0.015 0.985 27 H 0.066 0.934 28 H 0.327 0.673 29 H 0.028 0.972 30 H -0.015 1.015 31 H 0.261 0.739 32 H 0.084 0.916 33 H 0.043 0.957 34 H 0.026 0.974 35 H 0.065 0.935 36 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.604 3.052 5.938 16.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.054 4.054 3 H 0.067 0.933 4 C -0.154 4.154 5 C -0.108 4.108 6 H 0.105 0.895 7 C -0.064 4.064 8 N -0.320 5.320 9 C 0.066 3.934 10 C -0.553 4.553 11 H 0.081 0.919 12 C -0.146 4.146 13 N -0.538 5.538 14 Si 0.727 3.273 15 H -0.206 1.206 16 H -0.213 1.213 17 H -0.198 1.198 18 C -0.091 4.091 19 N -0.237 5.237 20 C -0.135 4.135 21 H 0.069 0.931 22 H 0.075 0.925 23 H 0.082 0.918 24 H 0.087 0.913 25 H 0.090 0.910 26 H 0.033 0.967 27 H 0.084 0.916 28 H 0.143 0.857 29 H 0.046 0.954 30 H 0.002 0.998 31 H 0.071 0.929 32 H 0.102 0.898 33 H 0.061 0.939 34 H 0.044 0.956 35 H 0.084 0.916 36 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -15.903 2.140 5.544 16.978 hybrid contribution 1.611 1.239 0.510 2.095 sum -14.292 3.380 6.055 15.886 Atomic orbital electron populations 1.21697 0.94082 1.02337 1.01049 1.22679 0.95805 0.95835 0.91032 0.93334 1.22415 0.97322 0.99005 0.96659 1.21940 0.94112 1.01249 0.93485 0.89487 1.21992 0.90692 0.94568 0.99099 1.60689 1.04431 1.57935 1.08938 1.19556 0.85533 0.93717 0.94568 1.21199 0.91862 1.20909 1.21283 0.91944 1.24997 0.99031 0.95454 0.95123 1.69963 1.22999 1.33541 1.27338 0.86473 0.81648 0.79869 0.79264 1.20575 1.21317 1.19837 1.23197 0.88988 1.00327 0.96543 1.65335 1.18778 1.36731 1.02899 1.22493 1.01511 0.95642 0.93877 0.93079 0.92451 0.91822 0.91280 0.90959 0.96688 0.91597 0.85665 0.95432 0.99757 0.92923 0.89779 0.93898 0.95558 0.91584 0.91339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.31 9.35 37.16 0.35 -0.96 16 2 C 0.05 0.65 2.89 -66.09 -0.19 0.46 16 3 H 0.05 0.59 7.90 -51.93 -0.41 0.18 16 4 C -0.12 -1.44 6.20 -25.35 -0.16 -1.60 16 5 C -0.09 -1.31 3.31 -89.24 -0.30 -1.61 16 6 H 0.09 1.36 8.14 -51.93 -0.42 0.93 16 7 C 0.07 1.21 4.85 -3.82 -0.02 1.19 16 8 N -0.69 -15.09 6.49 -115.05 -0.75 -15.84 16 9 C 0.19 5.18 5.44 -4.97 -0.03 5.15 16 10 C -0.51 -14.82 9.32 -34.44 -0.32 -15.14 16 11 H 0.06 1.77 7.81 -52.49 -0.41 1.36 16 12 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 13 N -0.90 -27.20 13.29 55.43 0.74 -26.46 16 14 Si 0.90 21.90 29.54 -169.99 -5.02 16.88 16 15 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 16 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 17 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 18 C 0.04 0.53 5.19 -2.19 -0.01 0.52 16 19 N -0.51 -6.60 5.34 -230.38 -1.23 -7.83 16 20 C 0.01 0.15 9.42 60.06 0.57 0.72 16 21 H 0.05 0.47 7.54 -51.93 -0.39 0.08 16 22 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 23 H 0.06 0.64 8.12 -51.93 -0.42 0.22 16 24 H 0.07 0.84 7.71 -51.93 -0.40 0.44 16 25 H 0.07 0.84 7.84 -51.93 -0.41 0.43 16 26 H 0.02 0.28 8.05 -51.93 -0.42 -0.14 16 27 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 28 H 0.33 6.84 7.91 -39.29 -0.31 6.52 16 29 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 30 H -0.02 -0.44 8.14 -51.93 -0.42 -0.86 16 31 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 32 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 33 H 0.04 0.64 7.62 -51.93 -0.40 0.25 16 34 H 0.03 0.29 7.97 -51.93 -0.41 -0.13 16 35 H 0.07 0.63 7.53 -51.93 -0.39 0.24 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 288.72 15.07 4.35 4.35 Total: -1.00 -30.11 288.72 -8.58 -38.69 By element: Atomic # 1 Polarization: 6.46 SS G_CDS: -6.46 Total: -0.01 kcal Atomic # 6 Polarization: -9.57 SS G_CDS: -0.21 Total: -9.78 kcal Atomic # 7 Polarization: -48.90 SS G_CDS: -1.24 Total: -50.14 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -30.11 -8.58 -38.69 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396551545.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.471 kcal (2) G-P(sol) polarization free energy of solvation -30.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds