Wall clock time and date at job start Mon Mar 30 2020 03:17:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.46376 * 2 1 4 4 C 1.50700 * 109.47215 * 240.00055 * 2 1 3 5 5 H 1.08000 * 119.99708 * 239.99624 * 4 2 1 6 6 C 1.37880 * 119.99845 * 59.99914 * 4 2 1 7 7 N 1.31506 * 120.00246 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99519 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47381 * 89.99987 * 8 6 4 10 10 H 1.48506 * 109.46914 * 209.99753 * 8 6 4 11 11 H 1.48500 * 109.47213 * 329.99428 * 8 6 4 12 12 N 1.46900 * 109.47083 * 119.99872 * 2 1 3 13 13 C 1.46903 * 110.99744 * 275.00339 * 12 2 1 14 14 C 1.53003 * 109.46723 * 175.52282 * 13 12 2 15 15 N 1.46894 * 115.54919 * 324.13417 * 14 13 12 16 16 C 1.46900 * 110.99856 * 173.91185 * 15 14 13 17 17 C 1.46900 * 111.00459 * 297.86429 * 15 14 13 18 18 C 1.53002 * 117.49867 * 109.80969 * 14 13 12 19 19 C 1.53006 * 117.49601 * 178.46709 * 14 13 12 20 20 H 1.09008 * 109.47029 * 179.97438 * 1 2 3 21 21 H 1.08999 * 109.47568 * 299.99866 * 1 2 3 22 22 H 1.09007 * 109.46960 * 60.00491 * 1 2 3 23 23 H 0.97004 * 119.99911 * 180.02562 * 7 6 4 24 24 H 1.00894 * 110.99756 * 151.05293 * 12 2 1 25 25 H 1.08994 * 109.47426 * 55.52181 * 13 12 2 26 26 H 1.08999 * 109.47219 * 295.51965 * 13 12 2 27 27 H 1.09003 * 109.47060 * 181.95711 * 16 15 14 28 28 H 1.08994 * 109.47319 * 61.95572 * 16 15 14 29 29 H 1.09006 * 109.47052 * 301.95219 * 16 15 14 30 30 H 1.09005 * 109.47182 * 300.00270 * 17 15 14 31 31 H 1.08995 * 109.47206 * 59.99813 * 17 15 14 32 32 H 1.08997 * 109.47503 * 180.02562 * 17 15 14 33 33 H 1.09002 * 117.49341 * 215.00071 * 18 14 13 34 34 H 1.08995 * 117.49697 * 0.02562 * 18 14 13 35 35 H 1.08995 * 117.49789 * 359.97271 * 19 14 13 36 36 H 1.08998 * 117.49444 * 144.97110 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6534 -1.5884 -1.1313 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3214 -1.1204 -4.0079 9 1 1.3429 -2.1617 -4.4118 10 1 2.4866 -0.1414 -5.1123 11 1 3.6294 -1.7582 -3.7121 12 7 2.0197 -0.6925 1.1995 13 6 2.0824 0.2227 2.3469 14 6 2.4883 -0.5569 3.5993 15 7 1.9608 -1.9246 3.6929 16 6 2.5245 -2.6280 4.8528 17 6 0.4926 -1.9205 3.7423 18 6 3.8829 -0.2968 4.1722 19 6 2.6448 0.2306 4.9017 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8901 23 1 0.7082 1.1608 -3.4845 24 1 2.9173 -1.1204 1.0288 25 1 1.1041 0.6772 2.5030 26 1 2.8181 1.0025 2.1500 27 1 2.1440 -3.6492 4.8786 28 1 2.2363 -2.1097 5.7673 29 1 3.6114 -2.6472 4.7731 30 1 0.1599 -1.3572 4.6142 31 1 0.1000 -1.4556 2.8380 32 1 0.1285 -2.9455 3.8118 33 1 4.4090 -1.1406 4.6186 34 1 4.5110 0.4300 3.6572 35 1 2.4591 1.3041 4.8662 36 1 2.3560 -0.2661 5.8280 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397797945.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:57 Heat of formation + Delta-G solvation = 37.901335 kcal Electronic energy + Delta-G solvation = -14754.216460 eV Core-core repulsion = 12467.547059 eV Total energy + Delta-G solvation = -2286.669400 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.15654 -35.42202 -33.51597 -32.24647 -28.92380 -27.22027 -25.31985 -24.59734 -23.31204 -22.29585 -19.64899 -18.64035 -16.71157 -15.96421 -14.97888 -14.73532 -14.29091 -13.98042 -13.49432 -13.20025 -12.73481 -12.36367 -12.13189 -11.87205 -11.72178 -11.33753 -11.01950 -10.96721 -10.81676 -10.69108 -10.54626 -10.22255 -10.07558 -9.81236 -9.60759 -8.75527 -8.41169 -7.78810 -7.06080 -5.96770 -4.02170 3.34050 3.40086 3.43766 3.88716 4.22821 4.45461 4.84078 5.04319 5.09101 5.33650 5.35284 5.46482 5.74211 5.76170 5.83228 5.87273 5.91005 6.10173 6.12023 6.21784 6.26214 6.33004 6.50679 6.94092 7.20110 7.29539 7.40314 7.42694 7.61314 7.86342 7.98837 8.35790 8.53805 8.80911 9.11198 9.63630 11.09691 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.044769 B = 0.007162 C = 0.007107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.281603 B = 3908.478117 C = 3938.933279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.210 3.790 3 H -0.004 1.004 4 C -0.513 4.513 5 H 0.060 0.940 6 C 0.060 3.940 7 N -0.892 5.892 8 Si 0.896 3.104 9 H -0.281 1.281 10 H -0.288 1.288 11 H -0.275 1.275 12 N -0.669 5.669 13 C 0.106 3.894 14 C 0.067 3.933 15 N -0.483 5.483 16 C 0.014 3.986 17 C 0.034 3.966 18 C -0.179 4.179 19 C -0.222 4.222 20 H 0.031 0.969 21 H 0.001 0.999 22 H 0.078 0.922 23 H 0.260 0.740 24 H 0.334 0.666 25 H 0.064 0.936 26 H 0.024 0.976 27 H 0.066 0.934 28 H 0.021 0.979 29 H 0.068 0.932 30 H 0.012 0.988 31 H 0.088 0.912 32 H 0.059 0.941 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.092 0.908 36 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.206 -2.481 12.916 13.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.102 3.898 3 H 0.014 0.986 4 C -0.551 4.551 5 H 0.078 0.922 6 C -0.141 4.141 7 N -0.532 5.532 8 Si 0.724 3.276 9 H -0.207 1.207 10 H -0.214 1.214 11 H -0.200 1.200 12 N -0.300 5.300 13 C -0.025 4.025 14 C -0.025 4.025 15 N -0.203 5.203 16 C -0.134 4.134 17 C -0.113 4.113 18 C -0.216 4.216 19 C -0.262 4.262 20 H 0.051 0.949 21 H 0.020 0.980 22 H 0.097 0.903 23 H 0.069 0.931 24 H 0.152 0.848 25 H 0.083 0.917 26 H 0.042 0.958 27 H 0.084 0.916 28 H 0.039 0.961 29 H 0.086 0.914 30 H 0.031 0.969 31 H 0.107 0.893 32 H 0.078 0.922 33 H 0.114 0.886 34 H 0.114 0.886 35 H 0.111 0.889 36 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 1.623 -2.891 12.485 12.918 hybrid contribution 0.843 0.576 -0.233 1.047 sum 2.466 -2.315 12.252 12.711 Atomic orbital electron populations 1.21706 0.98059 0.99239 0.99069 1.19105 0.92513 0.92173 0.85978 0.98597 1.21285 1.31109 1.12335 0.90420 0.92163 1.24919 0.95166 0.95006 0.99012 1.69901 1.36915 1.23027 1.23310 0.86537 0.79234 0.79307 0.82534 1.20673 1.21398 1.19953 1.60520 1.32636 1.31972 1.04823 1.21325 0.99280 0.92670 0.89251 1.22009 0.97803 0.89187 0.93475 1.61657 1.07189 1.12683 1.38813 1.22580 1.00704 0.98666 0.91467 1.22310 0.86748 1.00982 1.01308 1.23307 0.91181 1.03132 1.03984 1.23499 1.04057 1.00819 0.97869 0.94949 0.97976 0.90290 0.93051 0.84814 0.91736 0.95849 0.91560 0.96079 0.91368 0.96900 0.89334 0.92173 0.88624 0.88597 0.88932 0.89216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.07 9.19 37.16 0.34 -2.73 16 2 C 0.21 5.38 2.60 -68.86 -0.18 5.20 16 3 H 0.00 -0.10 7.85 -51.93 -0.41 -0.51 16 4 C -0.51 -14.28 8.59 -34.44 -0.30 -14.58 16 5 H 0.06 1.67 7.62 -52.49 -0.40 1.27 16 6 C 0.06 1.69 5.30 -17.82 -0.09 1.59 16 7 N -0.89 -25.83 11.32 55.43 0.63 -25.20 16 8 Si 0.90 21.60 29.54 -169.99 -5.02 16.58 16 9 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 10 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 12 N -0.67 -14.52 5.46 -107.95 -0.59 -15.10 16 13 C 0.11 1.96 4.79 -3.82 -0.02 1.94 16 14 C 0.07 1.04 2.19 -131.60 -0.29 0.75 16 15 N -0.48 -7.52 4.74 -235.40 -1.12 -8.64 16 16 C 0.01 0.18 8.68 60.06 0.52 0.70 16 17 C 0.03 0.52 9.37 60.06 0.56 1.08 16 18 C -0.18 -2.40 9.44 -26.69 -0.25 -2.65 16 19 C -0.22 -2.92 9.63 -26.69 -0.26 -3.18 16 20 H 0.03 0.80 8.14 -51.92 -0.42 0.38 16 21 H 0.00 0.03 7.39 -51.93 -0.38 -0.36 16 22 H 0.08 2.16 6.07 -51.93 -0.32 1.85 16 23 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 24 H 0.33 7.40 8.27 -39.29 -0.33 7.08 16 25 H 0.06 1.23 7.33 -51.93 -0.38 0.85 16 26 H 0.02 0.44 7.90 -51.93 -0.41 0.03 16 27 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.02 0.24 6.40 -51.93 -0.33 -0.09 16 29 H 0.07 0.81 6.10 -51.93 -0.32 0.50 16 30 H 0.01 0.18 8.14 -51.93 -0.42 -0.25 16 31 H 0.09 1.56 7.18 -51.93 -0.37 1.19 16 32 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.10 1.17 6.00 -51.93 -0.31 0.86 16 34 H 0.10 1.27 8.06 -51.93 -0.42 0.85 16 35 H 0.09 1.18 8.14 -51.93 -0.42 0.75 16 36 H 0.09 1.10 6.48 -51.93 -0.34 0.76 16 LS Contribution 283.82 15.07 4.28 4.28 Total: -1.00 -28.44 283.82 -7.74 -36.18 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -5.96 Total: 3.79 kcal Atomic # 6 Polarization: -11.92 SS G_CDS: 0.04 Total: -11.87 kcal Atomic # 7 Polarization: -47.87 SS G_CDS: -1.08 Total: -48.95 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -28.44 -7.74 -36.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397797945.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.081 kcal (2) G-P(sol) polarization free energy of solvation -28.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.179 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds