Wall clock time and date at job start Mon Mar 30 2020 03:17:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.47537 * 2 1 4 4 C 1.50701 * 109.47368 * 120.00189 * 2 1 3 5 5 H 1.08000 * 120.00291 * 119.99650 * 4 2 1 6 6 C 1.37883 * 119.99718 * 299.99883 * 4 2 1 7 7 N 1.31505 * 120.00024 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 119.99712 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47176 * 359.97438 * 8 6 4 10 10 H 1.48495 * 109.46844 * 120.00127 * 8 6 4 11 11 H 1.48499 * 109.46698 * 240.00093 * 8 6 4 12 12 N 1.46906 * 109.47112 * 240.00232 * 2 1 3 13 13 C 1.46894 * 110.99988 * 84.99923 * 12 2 1 14 14 C 1.53000 * 109.47015 * 176.02102 * 13 12 2 15 15 N 1.46897 * 115.55118 * 83.00448 * 14 13 12 16 16 C 1.46894 * 111.00048 * 279.94961 * 15 14 13 17 17 C 1.46902 * 110.99794 * 43.90319 * 15 14 13 18 18 C 1.53008 * 117.51852 * 228.70878 * 14 13 12 19 19 C 1.53002 * 117.49985 * 297.33789 * 14 13 12 20 20 H 1.09001 * 109.47064 * 179.97438 * 1 2 3 21 21 H 1.08999 * 109.46733 * 300.00127 * 1 2 3 22 22 H 1.08995 * 109.46959 * 59.99567 * 1 2 3 23 23 H 0.97003 * 120.00059 * 180.02562 * 7 6 4 24 24 H 1.00903 * 110.99425 * 208.95493 * 12 2 1 25 25 H 1.09001 * 109.47014 * 56.02434 * 13 12 2 26 26 H 1.08996 * 109.47128 * 296.02104 * 13 12 2 27 27 H 1.09002 * 109.47410 * 177.68563 * 16 15 14 28 28 H 1.08997 * 109.47309 * 297.67940 * 16 15 14 29 29 H 1.08994 * 109.47468 * 57.68296 * 16 15 14 30 30 H 1.09003 * 109.47038 * 296.04269 * 17 15 14 31 31 H 1.08998 * 109.47378 * 56.04718 * 17 15 14 32 32 H 1.09005 * 109.46823 * 176.05011 * 17 15 14 33 33 H 1.09000 * 117.49519 * 214.97084 * 18 14 13 34 34 H 1.08999 * 117.49756 * 359.97438 * 18 14 13 35 35 H 1.09007 * 117.49839 * 359.97159 * 19 14 13 36 36 H 1.08995 * 117.50368 * 144.97719 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9428 0.8296 2.6034 8 14 2.3214 -1.1204 4.0079 9 1 3.1455 -2.2878 3.6037 10 1 3.1467 -0.1874 4.8164 11 1 1.1661 -1.5867 4.8160 12 7 2.0196 -0.6925 -1.1995 13 6 2.0824 0.2226 -2.3469 14 6 2.6884 -0.5062 -3.5479 15 7 1.7532 -1.3267 -4.3290 16 6 1.5192 -2.6224 -3.6777 17 6 0.4884 -0.6140 -4.5532 18 6 3.8148 0.1978 -4.3074 19 6 4.1283 -1.0068 -3.4176 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8899 23 1 0.7088 1.1612 3.4844 24 1 2.9173 -1.1205 -1.0287 25 1 2.7027 1.0821 -2.0926 26 1 1.0770 0.5614 -2.5969 27 1 0.7920 -3.1933 -4.2552 28 1 2.4562 -3.1767 -3.6241 29 1 1.1357 -2.4589 -2.6707 30 1 -0.0053 -0.4406 -3.5970 31 1 0.6905 0.3418 -5.0365 32 1 -0.1587 -1.2148 -5.1924 33 1 3.8618 0.0521 -5.3865 34 1 4.1240 1.1806 -3.9516 35 1 4.6441 -0.8165 -2.4763 36 1 4.3817 -1.9450 -3.9111 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397797949.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:59 Heat of formation + Delta-G solvation = 30.735614 kcal Electronic energy + Delta-G solvation = -14836.832467 eV Core-core repulsion = 12549.852337 eV Total energy + Delta-G solvation = -2286.980129 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.88653 -35.32821 -33.94930 -32.25244 -28.74028 -27.34307 -25.44988 -24.57039 -23.38544 -22.06080 -19.74131 -18.65722 -16.71735 -15.90639 -14.93844 -14.73777 -14.34512 -13.99955 -13.51173 -13.31809 -12.86602 -12.34859 -12.08477 -11.51893 -11.41931 -11.40730 -11.19846 -11.13599 -10.92736 -10.78716 -10.32634 -10.24245 -10.13807 -9.92565 -9.53526 -8.84165 -8.50136 -7.99184 -7.23627 -6.04766 -4.11297 3.26786 3.34736 3.38868 3.98544 4.17596 4.38835 4.97562 5.17322 5.26950 5.36554 5.41181 5.72674 5.76044 5.84757 5.89531 5.94111 6.08435 6.09843 6.13487 6.27054 6.38384 6.44481 6.52597 6.85133 7.10383 7.20091 7.32587 7.42314 7.47790 7.76161 7.87437 8.24937 8.37319 8.65338 8.99789 9.54890 11.01519 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.041292 B = 0.007694 C = 0.007355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.929719 B = 3638.530783 C = 3805.852639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.211 3.789 3 H -0.001 1.001 4 C -0.517 4.517 5 H 0.060 0.940 6 C 0.061 3.939 7 N -0.890 5.890 8 Si 0.896 3.104 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.284 1.284 12 N -0.682 5.682 13 C 0.070 3.930 14 C 0.041 3.959 15 N -0.508 5.508 16 C 0.021 3.979 17 C 0.024 3.976 18 C -0.163 4.163 19 C -0.163 4.163 20 H 0.030 0.970 21 H 0.080 0.920 22 H 0.001 0.999 23 H 0.260 0.740 24 H 0.330 0.670 25 H 0.024 0.976 26 H 0.071 0.929 27 H 0.054 0.946 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.039 0.961 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.095 0.905 34 H 0.090 0.910 35 H 0.094 0.906 36 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.338 -2.240 -11.236 11.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.103 3.897 3 H 0.017 0.983 4 C -0.555 4.555 5 H 0.078 0.922 6 C -0.141 4.141 7 N -0.529 5.529 8 Si 0.724 3.276 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.210 1.210 12 N -0.314 5.314 13 C -0.062 4.062 14 C -0.050 4.050 15 N -0.230 5.230 16 C -0.127 4.127 17 C -0.124 4.124 18 C -0.201 4.201 19 C -0.201 4.201 20 H 0.049 0.951 21 H 0.099 0.901 22 H 0.020 0.980 23 H 0.070 0.930 24 H 0.148 0.852 25 H 0.042 0.958 26 H 0.089 0.911 27 H 0.072 0.928 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.058 0.942 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.114 0.886 34 H 0.109 0.891 35 H 0.112 0.888 36 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 1.822 -2.475 -11.715 12.111 hybrid contribution 0.625 0.301 1.886 2.010 sum 2.447 -2.173 -9.829 10.360 Atomic orbital electron populations 1.21695 0.97966 0.99167 0.99213 1.19120 0.92549 0.92288 0.85729 0.98320 1.21291 1.31347 1.12447 0.90429 0.92217 1.24928 0.95053 0.95000 0.99074 1.69905 1.36683 1.22951 1.23352 0.86471 0.78616 0.79623 0.82880 1.19748 1.21094 1.20972 1.60748 1.32109 1.32796 1.05726 1.21927 0.99932 0.93818 0.90484 1.21683 0.88296 0.99875 0.95176 1.62086 1.11723 1.03626 1.45602 1.22382 1.00977 0.90015 0.99315 1.22353 0.91031 0.98581 1.00478 1.23094 1.01998 0.96507 0.98543 1.22948 0.97310 0.98445 1.01392 0.95090 0.90127 0.97983 0.92985 0.85243 0.95818 0.91062 0.92752 0.92239 0.92062 0.94245 0.92014 0.92014 0.88637 0.89127 0.88793 0.88706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.06 9.19 37.16 0.34 -2.72 16 2 C 0.21 5.35 2.60 -68.86 -0.18 5.17 16 3 H 0.00 -0.02 7.74 -51.93 -0.40 -0.42 16 4 C -0.52 -14.18 8.59 -34.44 -0.30 -14.47 16 5 H 0.06 1.62 7.62 -52.49 -0.40 1.22 16 6 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 7 N -0.89 -25.54 11.32 55.43 0.63 -24.91 16 8 Si 0.90 21.30 29.54 -169.99 -5.02 16.28 16 9 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 12 N -0.68 -14.45 5.13 -107.96 -0.55 -15.01 16 13 C 0.07 1.29 5.23 -3.83 -0.02 1.27 16 14 C 0.04 0.63 1.42 -131.60 -0.19 0.44 16 15 N -0.51 -7.65 5.12 -235.40 -1.21 -8.86 16 16 C 0.02 0.31 9.40 60.06 0.56 0.88 16 17 C 0.02 0.34 8.79 60.07 0.53 0.86 16 18 C -0.16 -2.20 10.11 -26.72 -0.27 -2.47 16 19 C -0.16 -2.31 9.09 -26.73 -0.24 -2.56 16 20 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 21 H 0.08 2.20 6.07 -51.93 -0.32 1.89 16 22 H 0.00 0.03 7.53 -51.93 -0.39 -0.36 16 23 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 24 H 0.33 6.94 7.36 -39.29 -0.29 6.66 16 25 H 0.02 0.46 7.74 -51.93 -0.40 0.05 16 26 H 0.07 1.36 5.24 -51.93 -0.27 1.09 16 27 H 0.05 0.72 8.12 -51.93 -0.42 0.30 16 28 H 0.06 0.85 7.56 -51.93 -0.39 0.46 16 29 H 0.06 1.07 6.91 -51.93 -0.36 0.71 16 30 H 0.04 0.62 6.50 -51.93 -0.34 0.29 16 31 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.10 1.21 8.14 -51.93 -0.42 0.78 16 34 H 0.09 1.17 8.07 -51.93 -0.42 0.75 16 35 H 0.09 1.36 7.84 -51.92 -0.41 0.95 16 36 H 0.09 1.27 7.87 -51.93 -0.41 0.86 16 LS Contribution 285.19 15.07 4.30 4.30 Total: -1.00 -28.02 285.19 -7.75 -35.77 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: -6.04 Total: 4.41 kcal Atomic # 6 Polarization: -12.14 SS G_CDS: 0.15 Total: -11.99 kcal Atomic # 7 Polarization: -47.64 SS G_CDS: -1.13 Total: -48.77 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -28.02 -7.75 -35.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397797949.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.507 kcal (2) G-P(sol) polarization free energy of solvation -28.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.772 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds