Wall clock time and date at job start Mon Mar 30 2020 03:17:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.47537 * 2 1 4 4 C 1.50701 * 109.47368 * 120.00189 * 2 1 3 5 5 H 1.08000 * 120.00291 * 119.99650 * 4 2 1 6 6 C 1.37883 * 119.99718 * 299.99883 * 4 2 1 7 7 N 1.31505 * 120.00024 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 119.99712 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47176 * 359.97438 * 8 6 4 10 10 H 1.48495 * 109.46844 * 120.00127 * 8 6 4 11 11 H 1.48499 * 109.46698 * 240.00093 * 8 6 4 12 12 N 1.46906 * 109.47112 * 240.00232 * 2 1 3 13 13 C 1.46894 * 110.99988 * 84.99923 * 12 2 1 14 14 C 1.53000 * 109.47015 * 176.02102 * 13 12 2 15 15 N 1.46897 * 115.55118 * 83.00448 * 14 13 12 16 16 C 1.46894 * 111.00048 * 279.94961 * 15 14 13 17 17 C 1.46902 * 110.99794 * 43.90319 * 15 14 13 18 18 C 1.53008 * 117.51852 * 228.70878 * 14 13 12 19 19 C 1.53002 * 117.49985 * 297.33789 * 14 13 12 20 20 H 1.09001 * 109.47064 * 179.97438 * 1 2 3 21 21 H 1.08999 * 109.46733 * 300.00127 * 1 2 3 22 22 H 1.08995 * 109.46959 * 59.99567 * 1 2 3 23 23 H 0.97003 * 120.00059 * 180.02562 * 7 6 4 24 24 H 1.00903 * 110.99425 * 208.95493 * 12 2 1 25 25 H 1.09001 * 109.47014 * 56.02434 * 13 12 2 26 26 H 1.08996 * 109.47128 * 296.02104 * 13 12 2 27 27 H 1.09002 * 109.47410 * 177.68563 * 16 15 14 28 28 H 1.08997 * 109.47309 * 297.67940 * 16 15 14 29 29 H 1.08994 * 109.47468 * 57.68296 * 16 15 14 30 30 H 1.09003 * 109.47038 * 296.04269 * 17 15 14 31 31 H 1.08998 * 109.47378 * 56.04718 * 17 15 14 32 32 H 1.09005 * 109.46823 * 176.05011 * 17 15 14 33 33 H 1.09000 * 117.49519 * 214.97084 * 18 14 13 34 34 H 1.08999 * 117.49756 * 359.97438 * 18 14 13 35 35 H 1.09007 * 117.49839 * 359.97159 * 19 14 13 36 36 H 1.08995 * 117.50368 * 144.97719 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9428 0.8296 2.6034 8 14 2.3214 -1.1204 4.0079 9 1 3.1455 -2.2878 3.6037 10 1 3.1467 -0.1874 4.8164 11 1 1.1661 -1.5867 4.8160 12 7 2.0196 -0.6925 -1.1995 13 6 2.0824 0.2226 -2.3469 14 6 2.6884 -0.5062 -3.5479 15 7 1.7532 -1.3267 -4.3290 16 6 1.5192 -2.6224 -3.6777 17 6 0.4884 -0.6140 -4.5532 18 6 3.8148 0.1978 -4.3074 19 6 4.1283 -1.0068 -3.4176 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8899 23 1 0.7088 1.1612 3.4844 24 1 2.9173 -1.1205 -1.0287 25 1 2.7027 1.0821 -2.0926 26 1 1.0770 0.5614 -2.5969 27 1 0.7920 -3.1933 -4.2552 28 1 2.4562 -3.1767 -3.6241 29 1 1.1357 -2.4589 -2.6707 30 1 -0.0053 -0.4406 -3.5970 31 1 0.6905 0.3418 -5.0365 32 1 -0.1587 -1.2148 -5.1924 33 1 3.8618 0.0521 -5.3865 34 1 4.1240 1.1806 -3.9516 35 1 4.6441 -0.8165 -2.4763 36 1 4.3817 -1.9450 -3.9111 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397797949.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:59 Heat of formation + Delta-G solvation = 11.904318 kcal Electronic energy + Delta-G solvation = -14837.649053 eV Core-core repulsion = 12549.852337 eV Total energy + Delta-G solvation = -2287.796716 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.16209 -37.17424 -35.14080 -34.21832 -30.62644 -28.55946 -27.44877 -26.17185 -24.69283 -23.19501 -21.71000 -19.99035 -18.55020 -17.41714 -16.75514 -16.16009 -15.66138 -15.58474 -15.15079 -14.72339 -14.55907 -13.83590 -13.58709 -13.26631 -12.90323 -12.81522 -12.72232 -12.54487 -12.49231 -12.30720 -12.21257 -12.17989 -11.95567 -11.25263 -10.96516 -10.73891 -10.59841 -9.32349 -8.96199 -8.16038 -6.30678 1.39274 1.41134 1.52958 2.38816 2.81008 3.00680 3.12564 3.58287 3.94651 4.02611 4.27352 4.32889 4.54564 4.66829 4.74196 4.75427 4.77779 4.80518 4.86720 4.97973 5.01215 5.06367 5.13233 5.16538 5.28032 5.32355 5.42795 5.63725 5.81049 6.14258 6.17489 6.21216 6.44193 6.73639 6.96745 7.40067 8.89698 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.041292 B = 0.007694 C = 0.007355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.929719 B = 3638.530783 C = 3805.852639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.215 3.785 3 H -0.035 1.035 4 C -0.535 4.535 5 H 0.059 0.941 6 C 0.012 3.988 7 N -0.919 5.919 8 Si 0.963 3.037 9 H -0.266 1.266 10 H -0.280 1.280 11 H -0.280 1.280 12 N -0.674 5.674 13 C 0.074 3.926 14 C 0.024 3.976 15 N -0.503 5.503 16 C 0.025 3.975 17 C 0.025 3.975 18 C -0.143 4.143 19 C -0.159 4.159 20 H 0.026 0.974 21 H 0.056 0.944 22 H 0.016 0.984 23 H 0.263 0.737 24 H 0.331 0.669 25 H 0.014 0.986 26 H 0.063 0.937 27 H 0.071 0.929 28 H 0.065 0.935 29 H 0.031 0.969 30 H 0.016 0.984 31 H 0.070 0.930 32 H 0.080 0.920 33 H 0.112 0.888 34 H 0.095 0.905 35 H 0.087 0.913 36 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.118 -3.130 -12.165 12.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.107 3.893 3 H -0.017 1.017 4 C -0.573 4.573 5 H 0.077 0.923 6 C -0.187 4.187 7 N -0.558 5.558 8 Si 0.789 3.211 9 H -0.190 1.190 10 H -0.206 1.206 11 H -0.206 1.206 12 N -0.304 5.304 13 C -0.057 4.057 14 C -0.067 4.067 15 N -0.225 5.225 16 C -0.123 4.123 17 C -0.123 4.123 18 C -0.181 4.181 19 C -0.197 4.197 20 H 0.045 0.955 21 H 0.075 0.925 22 H 0.035 0.965 23 H 0.072 0.928 24 H 0.149 0.851 25 H 0.032 0.968 26 H 0.081 0.919 27 H 0.090 0.910 28 H 0.084 0.916 29 H 0.050 0.950 30 H 0.034 0.966 31 H 0.089 0.911 32 H 0.099 0.901 33 H 0.130 0.870 34 H 0.114 0.886 35 H 0.106 0.894 36 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 2.607 -3.369 -12.666 13.363 hybrid contribution 0.367 0.608 2.123 2.238 sum 2.974 -2.761 -10.543 11.298 Atomic orbital electron populations 1.21496 0.97852 0.98613 0.98715 1.18923 0.92616 0.90610 0.87154 1.01741 1.21587 1.31604 1.12614 0.91517 0.92274 1.25755 0.95154 0.95673 1.02123 1.70030 1.37497 1.24141 1.24143 0.85423 0.78120 0.78608 0.78966 1.18988 1.20589 1.20597 1.60665 1.32107 1.32798 1.04875 1.21900 0.99665 0.93405 0.90694 1.21587 0.89033 1.01214 0.94899 1.62183 1.11977 1.03529 1.44793 1.22357 1.01638 0.90401 0.97952 1.22387 0.90789 0.99462 0.99669 1.23156 0.99277 0.96466 0.99234 1.22986 0.95696 0.99457 1.01521 0.95464 0.92489 0.96527 0.92823 0.85137 0.96823 0.91882 0.91006 0.91620 0.95006 0.96578 0.91105 0.90092 0.87013 0.88632 0.89438 0.87473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.54 9.19 71.98 0.66 -4.88 16 2 C 0.22 11.18 2.60 44.17 0.11 11.29 16 3 H -0.03 -2.02 7.74 -2.39 -0.02 -2.04 16 4 C -0.53 -29.62 8.59 25.60 0.22 -29.40 16 5 H 0.06 3.21 7.62 -2.91 -0.02 3.19 16 6 C 0.01 0.67 5.30 84.66 0.45 1.12 16 7 N -0.92 -53.41 11.32 21.45 0.24 -53.17 16 8 Si 0.96 43.64 29.54 68.60 2.03 45.67 16 9 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 10 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 11 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 12 N -0.67 -28.78 5.13 -495.46 -2.54 -31.32 16 13 C 0.07 2.75 5.23 86.30 0.45 3.20 16 14 C 0.02 0.70 1.42 3.53 0.01 0.71 16 15 N -0.50 -14.16 5.12 -898.68 -4.60 -18.76 16 16 C 0.02 0.69 9.40 127.69 1.20 1.89 16 17 C 0.03 0.67 8.79 127.69 1.12 1.79 16 18 C -0.14 -3.51 10.11 30.60 0.31 -3.20 16 19 C -0.16 -4.18 9.09 30.60 0.28 -3.91 16 20 H 0.03 1.35 8.14 -2.39 -0.02 1.34 16 21 H 0.06 3.18 6.07 -2.39 -0.01 3.17 16 22 H 0.02 0.75 7.53 -2.39 -0.02 0.73 16 23 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 24 H 0.33 13.97 7.36 -89.69 -0.66 13.31 16 25 H 0.01 0.53 7.74 -2.39 -0.02 0.51 16 26 H 0.06 2.42 5.24 -2.39 -0.01 2.41 16 27 H 0.07 1.75 8.12 -2.39 -0.02 1.73 16 28 H 0.06 1.75 7.56 -2.39 -0.02 1.73 16 29 H 0.03 1.09 6.91 -2.39 -0.02 1.07 16 30 H 0.02 0.49 6.50 -2.39 -0.02 0.48 16 31 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.08 1.82 8.14 -2.38 -0.02 1.80 16 33 H 0.11 2.42 8.14 -2.39 -0.02 2.40 16 34 H 0.10 2.26 8.07 -2.39 -0.02 2.24 16 35 H 0.09 2.42 7.84 -2.38 -0.02 2.40 16 36 H 0.11 2.57 7.87 -2.39 -0.02 2.55 16 Total: -1.00 -59.28 285.19 0.32 -58.96 By element: Atomic # 1 Polarization: 19.62 SS G_CDS: 0.38 Total: 20.01 kcal Atomic # 6 Polarization: -26.19 SS G_CDS: 4.81 Total: -21.38 kcal Atomic # 7 Polarization: -96.35 SS G_CDS: -6.90 Total: -103.26 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Total: -59.28 0.32 -58.96 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397797949.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.864 kcal (2) G-P(sol) polarization free energy of solvation -59.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.960 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds