Wall clock time and date at job start Mon Mar 30 2020 03:00:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47559 * 2 1 4 4 N 1.46906 * 109.46889 * 240.00359 * 2 1 3 5 5 C 1.46898 * 110.99888 * 85.00162 * 4 2 1 6 6 C 1.50705 * 109.46661 * 180.02562 * 5 4 2 7 7 H 1.07998 * 120.00458 * 359.97438 * 6 5 4 8 8 C 1.37877 * 119.99662 * 180.02562 * 6 5 4 9 9 N 1.31519 * 120.00400 * 359.97438 * 8 6 5 10 10 Si 1.86804 * 120.00094 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.46657 * 89.99635 * 10 8 6 12 12 H 1.48493 * 109.47462 * 209.99859 * 10 8 6 13 13 H 1.48501 * 109.47005 * 330.00227 * 10 8 6 14 14 C 1.53000 * 109.47146 * 120.00680 * 2 1 3 15 15 C 1.53119 * 109.52363 * 59.67905 * 14 2 1 16 16 C 1.53041 * 109.27572 * 182.44255 * 15 14 2 17 17 N 1.46844 * 109.52459 * 59.18240 * 16 15 14 18 18 C 1.46854 * 111.19780 * 298.25451 * 17 16 15 19 19 C 1.53037 * 109.52085 * 61.74293 * 18 17 16 20 20 H 1.09002 * 109.46959 * 299.99827 * 1 2 3 21 21 H 1.09003 * 109.47335 * 59.99421 * 1 2 3 22 22 H 1.09002 * 109.47311 * 179.97438 * 1 2 3 23 23 H 1.00902 * 110.99923 * 208.96103 * 4 2 1 24 24 H 1.08995 * 109.47296 * 299.99911 * 5 4 2 25 25 H 1.08997 * 109.47334 * 60.00212 * 5 4 2 26 26 H 0.96997 * 120.00478 * 180.02562 * 9 8 6 27 27 H 1.08994 * 109.52400 * 179.87190 * 14 2 1 28 28 H 1.08997 * 109.50513 * 302.37947 * 15 14 2 29 29 H 1.08999 * 109.50556 * 62.50595 * 15 14 2 30 30 H 1.09001 * 109.46487 * 299.16337 * 16 15 14 31 31 H 1.09005 * 109.46056 * 179.19068 * 16 15 14 32 32 H 1.00905 * 111.00463 * 174.16213 * 17 16 15 33 33 H 1.09001 * 109.46342 * 301.73019 * 18 17 16 34 34 H 1.08993 * 109.46311 * 181.75657 * 18 17 16 35 35 H 1.08999 * 109.50355 * 180.88324 * 19 18 17 36 36 H 1.09000 * 109.50708 * 60.76198 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0196 -0.6925 -1.1995 5 6 2.0824 0.2227 -2.3469 6 6 2.5872 -0.5217 -3.5561 7 1 2.8368 -1.5697 -3.4798 8 6 2.7314 0.1354 -4.7596 9 7 2.4279 1.4117 -4.8525 10 14 3.3578 -0.7871 -6.2583 11 1 2.2086 -1.3691 -6.9972 12 1 4.0929 0.1502 -7.1450 13 1 4.2696 -1.8757 -5.8241 14 6 2.0400 -0.7214 1.2492 15 6 1.5236 -2.1629 1.2542 16 6 1.9862 -2.8607 2.5354 17 7 1.4724 -2.1337 3.7031 18 6 1.9926 -0.7610 3.7452 19 6 1.5302 -0.0005 2.5003 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3634 -1.0277 -0.0005 23 1 2.9172 -1.1206 -1.0288 24 1 1.0870 0.6165 -2.5525 25 1 2.7588 1.0462 -2.1182 26 1 2.5289 1.8739 -5.6992 27 1 3.1299 -0.7239 1.2489 28 1 0.4344 -2.1595 1.2148 29 1 1.9182 -2.6939 0.3879 30 1 3.0756 -2.8760 2.5676 31 1 1.6081 -3.8830 2.5489 32 1 1.6836 -2.6267 4.5578 33 1 3.0820 -0.7861 3.7717 34 1 1.6192 -0.2583 4.6373 35 1 1.9295 1.0134 2.5240 36 1 0.4411 0.0370 2.4802 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000400515892.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:08 Heat of formation + Delta-G solvation = -17.410545 kcal Electronic energy + Delta-G solvation = -14548.702235 eV Core-core repulsion = 12259.634331 eV Total energy + Delta-G solvation = -2289.067903 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.03298 -35.85042 -33.08623 -31.39143 -30.64891 -28.60120 -26.20846 -24.12462 -22.91391 -21.61468 -20.34522 -18.64897 -16.73570 -16.22301 -14.80246 -14.77013 -14.48473 -14.41139 -13.92231 -13.55307 -12.84794 -12.49473 -12.33886 -11.97508 -11.77066 -11.54162 -11.40446 -11.09009 -10.80095 -10.71976 -10.50345 -10.23556 -10.13578 -9.89881 -9.58901 -9.09362 -8.47931 -8.44550 -7.21481 -6.00237 -4.01932 3.33785 3.39328 3.43067 4.21629 4.45074 4.89626 4.94683 5.04647 5.33106 5.35273 5.37335 5.48448 5.58179 5.63328 5.80014 5.87134 5.89886 6.10630 6.13415 6.22660 6.26945 6.36691 6.61125 6.63796 6.66962 6.94986 7.03293 7.34120 7.34295 7.47783 7.83254 8.18662 8.47591 8.68188 9.07986 9.62892 11.10918 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.056850 B = 0.006118 C = 0.005797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 492.405692 B = 4575.597335 C = 4828.982229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.088 3.912 3 H 0.031 0.969 4 N -0.683 5.683 5 C 0.194 3.806 6 C -0.512 4.512 7 H 0.061 0.939 8 C 0.055 3.945 9 N -0.899 5.899 10 Si 0.898 3.102 11 H -0.280 1.280 12 H -0.288 1.288 13 H -0.274 1.274 14 C -0.087 4.087 15 C -0.106 4.106 16 C 0.055 3.945 17 N -0.690 5.690 18 C 0.059 3.941 19 C -0.114 4.114 20 H 0.046 0.954 21 H 0.052 0.948 22 H 0.059 0.941 23 H 0.326 0.674 24 H 0.028 0.972 25 H -0.016 1.016 26 H 0.261 0.739 27 H 0.058 0.942 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.025 0.975 31 H 0.070 0.930 32 H 0.336 0.664 33 H 0.025 0.975 34 H 0.069 0.931 35 H 0.062 0.938 36 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.784 -4.712 15.452 16.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.023 4.023 3 H 0.049 0.951 4 N -0.314 5.314 5 C 0.068 3.932 6 C -0.551 4.551 7 H 0.080 0.920 8 C -0.146 4.146 9 N -0.538 5.538 10 Si 0.726 3.274 11 H -0.206 1.206 12 H -0.213 1.213 13 H -0.199 1.199 14 C -0.106 4.106 15 C -0.143 4.143 16 C -0.074 4.074 17 N -0.321 5.321 18 C -0.070 4.070 19 C -0.152 4.152 20 H 0.065 0.935 21 H 0.071 0.929 22 H 0.078 0.922 23 H 0.143 0.857 24 H 0.046 0.954 25 H 0.001 0.999 26 H 0.070 0.930 27 H 0.077 0.923 28 H 0.092 0.908 29 H 0.095 0.905 30 H 0.043 0.957 31 H 0.089 0.911 32 H 0.153 0.847 33 H 0.044 0.956 34 H 0.088 0.912 35 H 0.080 0.920 36 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -1.990 -4.617 14.821 15.651 hybrid contribution 2.083 0.083 -0.416 2.126 sum 0.093 -4.535 14.405 15.102 Atomic orbital electron populations 1.21845 0.95459 1.01802 1.00350 1.21430 0.95745 0.95323 0.89796 0.95095 1.60730 1.32102 1.34737 1.03835 1.19580 0.96385 0.90186 0.87096 1.21209 1.43121 0.96678 0.94109 0.92036 1.24993 0.95741 0.94879 0.99000 1.69967 1.49062 1.09004 1.25812 0.86495 0.78881 0.79452 0.82539 1.20622 1.21349 1.19898 1.21339 0.99112 0.95733 0.94397 1.21598 1.02052 0.94841 0.95836 1.22015 0.96648 0.97307 0.91392 1.60297 1.63335 1.03108 1.05389 1.21911 0.96623 0.89701 0.98762 1.21702 1.02153 0.97973 0.93384 0.93543 0.92864 0.92189 0.85735 0.95391 0.99862 0.92971 0.92308 0.90805 0.90456 0.95666 0.91138 0.84693 0.95630 0.91236 0.91978 0.90584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.35 8.71 37.16 0.32 -2.02 16 2 C 0.09 1.58 2.45 -67.71 -0.17 1.42 16 3 H 0.03 0.61 7.80 -51.93 -0.40 0.20 16 4 N -0.68 -14.76 5.63 -107.99 -0.61 -15.37 16 5 C 0.19 5.19 5.24 -4.97 -0.03 5.16 16 6 C -0.51 -14.75 9.32 -34.44 -0.32 -15.07 16 7 H 0.06 1.74 7.81 -52.49 -0.41 1.33 16 8 C 0.05 1.59 5.46 -17.82 -0.10 1.50 16 9 N -0.90 -27.28 13.29 55.43 0.74 -26.54 16 10 Si 0.90 21.96 29.54 -169.99 -5.02 16.94 16 11 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 13 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 14 C -0.09 -1.28 1.94 -90.49 -0.18 -1.45 16 15 C -0.11 -1.48 4.89 -26.65 -0.13 -1.61 16 16 C 0.06 0.65 6.55 -3.83 -0.03 0.63 16 17 N -0.69 -7.66 6.85 -113.81 -0.78 -8.44 16 18 C 0.06 0.65 6.55 -3.83 -0.03 0.63 16 19 C -0.11 -1.45 5.09 -26.65 -0.14 -1.58 16 20 H 0.05 0.68 6.38 -51.93 -0.33 0.35 16 21 H 0.05 1.01 7.45 -51.93 -0.39 0.63 16 22 H 0.06 1.01 6.38 -51.93 -0.33 0.68 16 23 H 0.33 6.79 8.20 -39.29 -0.32 6.47 16 24 H 0.03 0.81 7.44 -51.93 -0.39 0.42 16 25 H -0.02 -0.47 8.05 -51.93 -0.42 -0.89 16 26 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 27 H 0.06 0.89 8.12 -51.93 -0.42 0.47 16 28 H 0.07 1.10 6.31 -51.93 -0.33 0.77 16 29 H 0.08 1.17 7.59 -51.93 -0.39 0.78 16 30 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.34 3.00 8.90 -39.29 -0.35 2.65 16 33 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.08 1.00 6.31 -51.93 -0.33 0.68 16 LS Contribution 278.58 15.07 4.20 4.20 Total: -1.00 -30.07 278.58 -8.31 -38.38 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: -6.06 Total: 3.24 kcal Atomic # 6 Polarization: -11.63 SS G_CDS: -0.78 Total: -12.41 kcal Atomic # 7 Polarization: -49.70 SS G_CDS: -0.65 Total: -50.35 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -30.07 -8.31 -38.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400515892.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.970 kcal (2) G-P(sol) polarization free energy of solvation -30.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds