Wall clock time and date at job start Mon Mar 30 2020 03:00:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47559 * 2 1 4 4 N 1.46906 * 109.46889 * 240.00359 * 2 1 3 5 5 C 1.46898 * 110.99888 * 85.00162 * 4 2 1 6 6 C 1.50705 * 109.46661 * 180.02562 * 5 4 2 7 7 H 1.07998 * 120.00458 * 359.97438 * 6 5 4 8 8 C 1.37877 * 119.99662 * 180.02562 * 6 5 4 9 9 N 1.31519 * 120.00400 * 359.97438 * 8 6 5 10 10 Si 1.86804 * 120.00094 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.46657 * 89.99635 * 10 8 6 12 12 H 1.48493 * 109.47462 * 209.99859 * 10 8 6 13 13 H 1.48501 * 109.47005 * 330.00227 * 10 8 6 14 14 C 1.53000 * 109.47146 * 120.00680 * 2 1 3 15 15 C 1.53119 * 109.52363 * 59.67905 * 14 2 1 16 16 C 1.53041 * 109.27572 * 182.44255 * 15 14 2 17 17 N 1.46844 * 109.52459 * 59.18240 * 16 15 14 18 18 C 1.46854 * 111.19780 * 298.25451 * 17 16 15 19 19 C 1.53037 * 109.52085 * 61.74293 * 18 17 16 20 20 H 1.09002 * 109.46959 * 299.99827 * 1 2 3 21 21 H 1.09003 * 109.47335 * 59.99421 * 1 2 3 22 22 H 1.09002 * 109.47311 * 179.97438 * 1 2 3 23 23 H 1.00902 * 110.99923 * 208.96103 * 4 2 1 24 24 H 1.08995 * 109.47296 * 299.99911 * 5 4 2 25 25 H 1.08997 * 109.47334 * 60.00212 * 5 4 2 26 26 H 0.96997 * 120.00478 * 180.02562 * 9 8 6 27 27 H 1.08994 * 109.52400 * 179.87190 * 14 2 1 28 28 H 1.08997 * 109.50513 * 302.37947 * 15 14 2 29 29 H 1.08999 * 109.50556 * 62.50595 * 15 14 2 30 30 H 1.09001 * 109.46487 * 299.16337 * 16 15 14 31 31 H 1.09005 * 109.46056 * 179.19068 * 16 15 14 32 32 H 1.00905 * 111.00463 * 174.16213 * 17 16 15 33 33 H 1.09001 * 109.46342 * 301.73019 * 18 17 16 34 34 H 1.08993 * 109.46311 * 181.75657 * 18 17 16 35 35 H 1.08999 * 109.50355 * 180.88324 * 19 18 17 36 36 H 1.09000 * 109.50708 * 60.76198 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0196 -0.6925 -1.1995 5 6 2.0824 0.2227 -2.3469 6 6 2.5872 -0.5217 -3.5561 7 1 2.8368 -1.5697 -3.4798 8 6 2.7314 0.1354 -4.7596 9 7 2.4279 1.4117 -4.8525 10 14 3.3578 -0.7871 -6.2583 11 1 2.2086 -1.3691 -6.9972 12 1 4.0929 0.1502 -7.1450 13 1 4.2696 -1.8757 -5.8241 14 6 2.0400 -0.7214 1.2492 15 6 1.5236 -2.1629 1.2542 16 6 1.9862 -2.8607 2.5354 17 7 1.4724 -2.1337 3.7031 18 6 1.9926 -0.7610 3.7452 19 6 1.5302 -0.0005 2.5003 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3634 -1.0277 -0.0005 23 1 2.9172 -1.1206 -1.0288 24 1 1.0870 0.6165 -2.5525 25 1 2.7588 1.0462 -2.1182 26 1 2.5289 1.8739 -5.6992 27 1 3.1299 -0.7239 1.2489 28 1 0.4344 -2.1595 1.2148 29 1 1.9182 -2.6939 0.3879 30 1 3.0756 -2.8760 2.5676 31 1 1.6081 -3.8830 2.5489 32 1 1.6836 -2.6267 4.5578 33 1 3.0820 -0.7861 3.7717 34 1 1.6192 -0.2583 4.6373 35 1 1.9295 1.0134 2.5240 36 1 0.4411 0.0370 2.4802 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000400515892.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:07 Heat of formation + Delta-G solvation = -39.405415 kcal Electronic energy + Delta-G solvation = -14549.656004 eV Core-core repulsion = 12259.634331 eV Total energy + Delta-G solvation = -2290.021673 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.20819 -37.32272 -35.04642 -33.04143 -31.65684 -30.07499 -28.18536 -25.52729 -24.06366 -23.35434 -21.68238 -19.92688 -18.57062 -17.51406 -16.71245 -16.35043 -15.88020 -15.51195 -15.28318 -14.77667 -14.44454 -13.93910 -13.83538 -13.53830 -13.28850 -12.94087 -12.83818 -12.75709 -12.52274 -12.35276 -12.06817 -11.72087 -11.42720 -11.36856 -11.17088 -10.87846 -10.65471 -9.34071 -9.08854 -8.22950 -6.34485 1.40359 1.42674 1.53750 2.39549 3.10145 3.36854 3.51292 3.80716 3.89288 4.08767 4.35514 4.38296 4.48148 4.54182 4.57668 4.76273 4.83107 4.86516 4.94403 4.98564 5.07021 5.11266 5.14922 5.25446 5.32636 5.35062 5.44063 5.61644 5.65248 6.04021 6.12386 6.48409 6.59542 6.74797 6.90623 7.36810 8.88831 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.056850 B = 0.006118 C = 0.005797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 492.405692 B = 4575.597335 C = 4828.982229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.084 3.916 3 H 0.013 0.987 4 N -0.678 5.678 5 C 0.211 3.789 6 C -0.535 4.535 7 H 0.065 0.935 8 C 0.000 4.000 9 N -0.936 5.936 10 Si 0.975 3.025 11 H -0.273 1.273 12 H -0.281 1.281 13 H -0.262 1.262 14 C -0.078 4.078 15 C -0.103 4.103 16 C 0.061 3.939 17 N -0.695 5.695 18 C 0.062 3.938 19 C -0.112 4.112 20 H 0.074 0.926 21 H 0.025 0.975 22 H 0.063 0.937 23 H 0.331 0.669 24 H -0.002 1.002 25 H -0.046 1.046 26 H 0.265 0.735 27 H 0.055 0.945 28 H 0.066 0.934 29 H 0.062 0.938 30 H 0.028 0.972 31 H 0.083 0.917 32 H 0.352 0.648 33 H 0.028 0.972 34 H 0.089 0.911 35 H 0.065 0.935 36 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.429 -6.043 16.457 17.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.026 4.026 3 H 0.031 0.969 4 N -0.309 5.309 5 C 0.083 3.917 6 C -0.573 4.573 7 H 0.083 0.917 8 C -0.198 4.198 9 N -0.576 5.576 10 Si 0.799 3.201 11 H -0.198 1.198 12 H -0.207 1.207 13 H -0.187 1.187 14 C -0.097 4.097 15 C -0.140 4.140 16 C -0.068 4.068 17 N -0.327 5.327 18 C -0.067 4.067 19 C -0.150 4.150 20 H 0.092 0.908 21 H 0.044 0.956 22 H 0.082 0.918 23 H 0.148 0.852 24 H 0.016 0.984 25 H -0.028 1.028 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.084 0.916 29 H 0.080 0.920 30 H 0.046 0.954 31 H 0.102 0.898 32 H 0.171 0.829 33 H 0.046 0.954 34 H 0.107 0.893 35 H 0.084 0.916 36 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -1.637 -5.964 15.863 17.026 hybrid contribution 1.940 0.532 -0.678 2.123 sum 0.303 -5.432 15.185 16.130 Atomic orbital electron populations 1.21791 0.94603 1.01998 1.00342 1.21558 0.96379 0.94587 0.90029 0.96859 1.60628 1.32343 1.33791 1.04097 1.19204 0.93696 0.89960 0.88850 1.21567 1.43600 0.97009 0.95165 0.91704 1.25986 0.95606 0.95752 1.02466 1.70101 1.49830 1.10768 1.26917 0.85304 0.78511 0.78236 0.78056 1.19834 1.20675 1.18651 1.21251 0.98836 0.96157 0.93492 1.21530 1.01388 0.94272 0.96848 1.21920 0.96802 0.97668 0.90441 1.60252 1.63380 1.03244 1.05871 1.21895 0.96835 0.89611 0.98359 1.21682 1.01910 0.98288 0.93106 0.90770 0.95619 0.91830 0.85160 0.98352 1.02808 0.92636 0.92607 0.91579 0.91982 0.95387 0.89847 0.82914 0.95351 0.89254 0.91588 0.90827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.48 8.71 71.98 0.63 -3.85 16 2 C 0.08 3.10 2.45 44.91 0.11 3.21 16 3 H 0.01 0.54 7.80 -2.39 -0.02 0.52 16 4 N -0.68 -30.02 5.63 -495.58 -2.79 -32.81 16 5 C 0.21 11.73 5.24 85.56 0.45 12.17 16 6 C -0.54 -31.32 9.32 25.60 0.24 -31.08 16 7 H 0.06 3.67 7.81 -2.91 -0.02 3.65 16 8 C 0.00 -0.01 5.46 84.65 0.46 0.45 16 9 N -0.94 -57.86 13.29 21.45 0.28 -57.57 16 10 Si 0.97 45.00 29.54 68.60 2.03 47.03 16 11 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 12 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 13 H -0.26 -11.53 7.11 99.48 0.71 -10.83 16 14 C -0.08 -2.24 1.94 -10.71 -0.02 -2.26 16 15 C -0.10 -2.76 4.89 30.65 0.15 -2.61 16 16 C 0.06 1.29 6.55 86.33 0.57 1.86 16 17 N -0.69 -13.35 6.85 -513.99 -3.52 -16.87 16 18 C 0.06 1.19 6.55 86.32 0.57 1.76 16 19 C -0.11 -2.63 5.09 30.65 0.16 -2.47 16 20 H 0.07 2.12 6.38 -2.39 -0.02 2.11 16 21 H 0.02 1.00 7.45 -2.39 -0.02 0.98 16 22 H 0.06 2.13 6.38 -2.39 -0.02 2.12 16 23 H 0.33 14.01 8.20 -89.69 -0.74 13.28 16 24 H 0.00 -0.10 7.44 -2.39 -0.02 -0.12 16 25 H -0.05 -2.75 8.05 -2.39 -0.02 -2.77 16 26 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 27 H 0.06 1.64 8.12 -2.39 -0.02 1.62 16 28 H 0.07 1.88 6.31 -2.39 -0.02 1.87 16 29 H 0.06 1.84 7.59 -2.39 -0.02 1.83 16 30 H 0.03 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.08 1.57 8.14 -2.38 -0.02 1.55 16 32 H 0.35 5.10 8.90 -89.69 -0.80 4.30 16 33 H 0.03 0.54 8.14 -2.39 -0.02 0.52 16 34 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.07 1.78 6.31 -2.39 -0.02 1.76 16 Total: -1.00 -64.95 278.58 -1.17 -66.12 By element: Atomic # 1 Polarization: 17.39 SS G_CDS: -0.48 Total: 16.92 kcal Atomic # 6 Polarization: -26.11 SS G_CDS: 3.30 Total: -22.81 kcal Atomic # 7 Polarization: -101.23 SS G_CDS: -6.02 Total: -107.25 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Total: -64.95 -1.17 -66.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400515892.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.715 kcal (2) G-P(sol) polarization free energy of solvation -64.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds