Wall clock time and date at job start Mon Mar 30 2020 03:12:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09010 * 109.46745 * 2 1 4 4 C 1.52998 * 109.47389 * 240.00253 * 2 1 3 5 5 H 1.09006 * 110.64214 * 306.71309 * 4 2 1 6 6 C 1.54591 * 110.72905 * 183.55608 * 4 2 1 7 7 C 1.53990 * 105.14207 * 219.68375 * 6 4 2 8 8 N 1.47895 * 107.06066 * 358.77400 * 7 6 4 9 9 C 1.48538 * 105.82105 * 25.32735 * 8 7 6 10 10 N 1.46897 * 109.47445 * 119.99995 * 2 1 3 11 11 C 1.46898 * 110.99763 * 54.44857 * 10 2 1 12 12 C 1.46900 * 111.00014 * 290.49525 * 10 2 1 13 13 C 1.50697 * 109.47113 * 189.99717 * 12 10 2 14 14 H 1.08001 * 120.00140 * 359.97438 * 13 12 10 15 15 C 1.37880 * 119.99776 * 179.97438 * 13 12 10 16 16 N 1.31520 * 119.99949 * 179.97438 * 15 13 12 17 17 Si 1.86799 * 120.00137 * 0.02562 * 15 13 12 18 18 H 1.48503 * 109.46774 * 90.00057 * 17 15 13 19 19 H 1.48504 * 109.47119 * 209.99459 * 17 15 13 20 20 H 1.48495 * 109.46921 * 329.99742 * 17 15 13 21 21 H 1.08998 * 109.47215 * 294.03974 * 1 2 3 22 22 H 1.08994 * 109.47164 * 174.04125 * 1 2 3 23 23 H 1.08997 * 109.47039 * 54.04223 * 1 2 3 24 24 H 1.09003 * 110.30479 * 338.60360 * 6 4 2 25 25 H 1.09000 * 110.30781 * 100.76211 * 6 4 2 26 26 H 1.09007 * 109.91659 * 118.12743 * 7 6 4 27 27 H 1.08999 * 109.91780 * 239.22159 * 7 6 4 28 28 H 1.00907 * 111.00350 * 264.82107 * 8 7 6 29 29 H 1.08993 * 110.66978 * 202.35904 * 9 8 7 30 30 H 1.09005 * 110.66077 * 79.22674 * 9 8 7 31 31 H 1.08998 * 109.47576 * 54.22188 * 11 10 2 32 32 H 1.09000 * 109.47257 * 174.22725 * 11 10 2 33 33 H 1.09006 * 109.47263 * 294.22185 * 11 10 2 34 34 H 1.08996 * 109.47076 * 309.99786 * 12 10 2 35 35 H 1.08996 * 109.47170 * 69.99694 * 12 10 2 36 36 H 0.96995 * 120.00272 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7212 -1.2492 5 1 1.5932 -1.7121 -1.3302 6 6 3.5830 -0.8162 -1.2345 7 6 4.0156 -0.5606 -2.6901 8 7 2.7817 -0.3647 -3.4815 9 6 1.7567 0.1177 -2.5207 10 7 2.0197 -0.6925 1.1994 11 6 1.4434 -2.0398 1.3015 12 6 1.7425 0.0918 2.4102 13 6 2.4666 -0.5199 3.5817 14 1 3.0718 -1.4033 3.4410 15 6 2.3564 0.0481 4.8332 16 7 2.9879 -0.4861 5.8557 17 14 1.3090 1.5756 5.0767 18 1 -0.0816 1.1743 5.4090 19 1 1.8686 2.3876 6.1870 20 1 1.3075 2.3789 3.8278 21 1 -0.3633 0.4186 0.9385 22 1 -0.3633 -1.0221 -0.1067 23 1 -0.3633 0.6034 -0.8318 24 1 4.0025 -0.0557 -0.5760 25 1 3.8977 -1.8097 -0.9151 26 1 4.6357 0.3344 -2.7415 27 1 4.5707 -1.4189 -3.0687 28 1 2.4909 -1.2270 -3.9176 29 1 0.7532 -0.0808 -2.8969 30 1 1.8895 1.1804 -2.3180 31 1 1.6353 -2.5880 0.3792 32 1 1.8992 -2.5674 2.1393 33 1 0.3679 -1.9638 1.4619 34 1 2.0855 1.1163 2.2658 35 1 0.6702 0.0918 2.6055 36 1 2.9101 -0.0867 6.7362 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000400634424.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:59 Heat of formation + Delta-G solvation = 2.863554 kcal Electronic energy + Delta-G solvation = -14867.995761 eV Core-core repulsion = 12579.807008 eV Total energy + Delta-G solvation = -2288.188753 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.17116 -36.67336 -32.76620 -31.05151 -29.32554 -27.73300 -27.57547 -25.20669 -22.63617 -21.23962 -20.28955 -18.86214 -16.92167 -16.57982 -15.20379 -14.87597 -14.12033 -14.01955 -13.62122 -13.40265 -13.11782 -12.83286 -12.29555 -12.23995 -11.71218 -11.52716 -11.31843 -11.07586 -10.98620 -10.73170 -10.51611 -10.46956 -10.30856 -9.94560 -9.78438 -9.28478 -8.60627 -8.57038 -7.31740 -6.05246 -4.02107 3.27205 3.35180 3.37180 4.30427 4.41676 4.66304 4.88237 5.06613 5.25853 5.29532 5.37445 5.54849 5.56028 5.61445 5.73608 5.89011 5.97746 6.01612 6.13070 6.14132 6.21849 6.28513 6.41618 6.50440 6.60800 6.70348 6.81921 6.89309 7.02754 7.33971 7.61615 7.93213 8.08239 8.67144 9.03570 9.56850 11.08018 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.045459 B = 0.007716 C = 0.007370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.785054 B = 3628.136094 C = 3798.480499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.087 3.913 3 H 0.075 0.925 4 C -0.110 4.110 5 H 0.070 0.930 6 C -0.131 4.131 7 C 0.037 3.963 8 N -0.678 5.678 9 C 0.047 3.953 10 N -0.521 5.521 11 C 0.035 3.965 12 C 0.161 3.839 13 C -0.507 4.507 14 H 0.080 0.920 15 C 0.067 3.933 16 N -0.901 5.901 17 Si 0.874 3.126 18 H -0.278 1.278 19 H -0.286 1.286 20 H -0.267 1.267 21 H 0.057 0.943 22 H 0.054 0.946 23 H 0.051 0.949 24 H 0.079 0.921 25 H 0.066 0.934 26 H 0.072 0.928 27 H 0.060 0.940 28 H 0.332 0.668 29 H 0.069 0.931 30 H 0.079 0.921 31 H 0.045 0.955 32 H 0.074 0.926 33 H 0.015 0.985 34 H 0.026 0.974 35 H -0.015 1.015 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.312 0.010 -15.054 15.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.022 4.022 3 H 0.094 0.906 4 C -0.131 4.131 5 H 0.088 0.912 6 C -0.170 4.170 7 C -0.092 4.092 8 N -0.304 5.304 9 C -0.082 4.082 10 N -0.244 5.244 11 C -0.113 4.113 12 C 0.035 3.965 13 C -0.546 4.546 14 H 0.098 0.902 15 C -0.134 4.134 16 N -0.541 5.541 17 Si 0.702 3.298 18 H -0.204 1.204 19 H -0.211 1.211 20 H -0.192 1.192 21 H 0.076 0.924 22 H 0.073 0.927 23 H 0.070 0.930 24 H 0.098 0.902 25 H 0.084 0.916 26 H 0.091 0.909 27 H 0.079 0.921 28 H 0.147 0.853 29 H 0.088 0.912 30 H 0.098 0.902 31 H 0.064 0.936 32 H 0.093 0.907 33 H 0.033 0.967 34 H 0.044 0.956 35 H 0.003 0.997 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.568 0.645 -15.207 15.436 hybrid contribution -1.686 0.045 1.035 1.979 sum -4.254 0.690 -14.172 14.812 Atomic orbital electron populations 1.22484 0.98491 1.01604 1.01785 1.21679 0.91874 0.97919 0.90771 0.90646 1.22732 0.96300 0.99060 0.94981 0.91195 1.22622 0.94962 1.03109 0.96265 1.22812 0.93020 1.00989 0.92429 1.62784 1.04390 1.33896 1.29357 1.23165 0.94828 0.99948 0.90305 1.62174 1.57410 1.02595 1.02219 1.22244 0.96627 0.91472 1.00949 1.20192 0.94184 0.93872 0.88235 1.21049 1.29305 1.13734 0.90473 0.90211 1.24904 0.95541 0.96987 0.95957 1.69894 1.43230 1.40764 1.00169 0.86873 0.80825 0.83997 0.78122 1.20423 1.21145 1.19190 0.92356 0.92714 0.92952 0.90188 0.91557 0.90945 0.92116 0.85330 0.91227 0.90236 0.93609 0.90680 0.96665 0.95608 0.99749 0.92700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.78 8.16 37.16 0.30 -2.48 16 2 C 0.09 1.44 1.75 -67.72 -0.12 1.32 16 3 H 0.08 1.29 7.83 -51.92 -0.41 0.89 16 4 C -0.11 -1.51 2.16 -88.76 -0.19 -1.70 16 5 H 0.07 0.96 6.82 -51.93 -0.35 0.60 16 6 C -0.13 -1.84 6.07 -25.38 -0.15 -1.99 16 7 C 0.04 0.44 7.51 -2.76 -0.02 0.42 16 8 N -0.68 -7.90 7.51 -110.09 -0.83 -8.73 16 9 C 0.05 0.57 6.43 -1.89 -0.01 0.56 16 10 N -0.52 -10.61 4.25 -236.34 -1.00 -11.62 16 11 C 0.04 0.67 8.44 60.06 0.51 1.18 16 12 C 0.16 3.90 3.36 -4.98 -0.02 3.88 16 13 C -0.51 -14.42 9.09 -34.44 -0.31 -14.73 16 14 H 0.08 2.47 7.34 -52.49 -0.39 2.08 16 15 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 16 N -0.90 -27.72 13.96 55.43 0.77 -26.94 16 17 Si 0.87 21.63 27.47 -169.99 -4.67 16.96 16 18 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 19 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 20 H -0.27 -6.36 6.54 56.52 0.37 -5.99 16 21 H 0.06 0.98 6.65 -51.93 -0.35 0.64 16 22 H 0.05 0.79 6.83 -51.93 -0.35 0.44 16 23 H 0.05 0.66 7.80 -51.93 -0.41 0.26 16 24 H 0.08 1.29 7.85 -51.93 -0.41 0.88 16 25 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 26 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.33 3.34 8.92 -39.29 -0.35 2.99 16 29 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.08 1.00 7.96 -51.93 -0.41 0.59 16 31 H 0.05 0.75 6.37 -51.93 -0.33 0.42 16 32 H 0.07 1.60 6.91 -51.93 -0.36 1.24 16 33 H 0.01 0.28 6.70 -51.93 -0.35 -0.07 16 34 H 0.03 0.64 6.99 -51.93 -0.36 0.28 16 35 H -0.02 -0.37 6.33 -51.93 -0.33 -0.69 16 36 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 274.57 15.07 4.14 4.14 Total: -1.00 -29.83 274.57 -7.71 -37.54 By element: Atomic # 1 Polarization: 6.34 SS G_CDS: -6.01 Total: 0.33 kcal Atomic # 6 Polarization: -11.57 SS G_CDS: -0.11 Total: -11.68 kcal Atomic # 7 Polarization: -46.23 SS G_CDS: -1.06 Total: -47.29 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.67 Total: 16.96 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -29.83 -7.71 -37.54 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400634424.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.403 kcal (2) G-P(sol) polarization free energy of solvation -29.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.540 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds