Wall clock time and date at job start Mon Mar 30 2020 03:13:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 109.46934 * 2 1 4 4 C 1.53002 * 109.47416 * 120.00164 * 2 1 3 5 5 H 1.09000 * 110.62544 * 182.65242 * 4 2 1 6 6 C 1.55138 * 110.70367 * 305.94776 * 4 2 1 7 7 C 1.54905 * 101.65382 * 154.03361 * 6 4 2 8 8 N 1.47847 * 104.79600 * 322.93223 * 7 6 4 9 9 C 1.47445 * 108.56426 * 24.09442 * 8 7 6 10 10 N 1.46901 * 109.47051 * 240.00339 * 2 1 3 11 11 C 1.46898 * 111.00105 * 49.48239 * 10 2 1 12 12 C 1.46909 * 111.00022 * 173.43760 * 10 2 1 13 13 C 1.50697 * 109.47304 * 169.99790 * 12 10 2 14 14 H 1.08000 * 120.00090 * 359.97438 * 13 12 10 15 15 C 1.37875 * 120.00186 * 179.97438 * 13 12 10 16 16 N 1.31517 * 119.99698 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 120.00156 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.46769 * 0.02562 * 17 15 13 19 19 H 1.48496 * 109.47115 * 120.00311 * 17 15 13 20 20 H 1.48494 * 109.46965 * 240.00336 * 17 15 13 21 21 H 1.09004 * 109.46934 * 180.02562 * 1 2 3 22 22 H 1.08994 * 109.47267 * 299.99842 * 1 2 3 23 23 H 1.09005 * 109.47361 * 60.00047 * 1 2 3 24 24 H 1.08992 * 110.99313 * 272.12890 * 6 4 2 25 25 H 1.09008 * 110.98928 * 35.94395 * 6 4 2 26 26 H 1.08991 * 110.37987 * 204.10289 * 7 6 4 27 27 H 1.09001 * 110.46836 * 81.80538 * 7 6 4 28 28 H 1.00899 * 111.00240 * 146.35793 * 8 7 6 29 29 H 1.09001 * 109.88331 * 239.59929 * 9 8 7 30 30 H 1.08998 * 110.02457 * 118.49637 * 9 8 7 31 31 H 1.08996 * 109.47137 * 54.17510 * 11 10 2 32 32 H 1.09002 * 109.47185 * 174.17751 * 11 10 2 33 33 H 1.09001 * 109.47029 * 294.17431 * 11 10 2 34 34 H 1.08999 * 109.46724 * 290.00012 * 12 10 2 35 35 H 1.08996 * 109.47237 * 49.99536 * 12 10 2 36 36 H 0.96997 * 119.99981 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 3.1288 -0.6915 1.2921 6 6 1.4197 -0.1044 2.5304 7 6 1.4798 -1.2997 3.5139 8 7 1.1866 -2.4872 2.6833 9 6 1.5322 -2.1780 1.2837 10 7 2.0196 -0.6924 -1.1995 11 6 1.3551 -0.1862 -2.4078 12 6 3.4797 -0.5778 -1.3144 13 6 3.9713 -1.4945 -2.4047 14 1 3.2695 -2.1020 -2.9568 15 6 5.3171 -1.5579 -2.6975 16 7 6.1719 -0.8186 -2.0248 17 14 5.9265 -2.6938 -4.0496 18 1 4.7734 -3.4115 -4.6500 19 1 6.6109 -1.8940 -5.0969 20 1 6.8792 -3.6783 -3.4769 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8899 23 1 -0.3634 0.5138 -0.8900 24 1 2.0205 0.7297 2.8925 25 1 0.3894 0.2055 2.3551 26 1 0.7273 -1.1874 4.2943 27 1 2.4734 -1.3810 3.9547 28 1 1.6966 -3.2933 3.0120 29 1 0.6488 -2.2779 0.6530 30 1 2.3147 -2.8519 0.9349 31 1 1.4687 0.8967 -2.4583 32 1 1.8080 -0.6405 -3.2890 33 1 0.2954 -0.4391 -2.3727 34 1 3.7453 0.4510 -1.5575 35 1 3.9418 -0.8584 -0.3680 36 1 7.1187 -0.8634 -2.2305 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000400635119.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:02 Heat of formation + Delta-G solvation = -16.828454 kcal Electronic energy + Delta-G solvation = -14951.798503 eV Core-core repulsion = 12662.755841 eV Total energy + Delta-G solvation = -2289.042662 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.38729 -37.78566 -34.89732 -32.76004 -30.33451 -29.74779 -28.07552 -26.93743 -24.09631 -22.75151 -21.98515 -19.68513 -18.56625 -17.62612 -16.93606 -16.74699 -16.22163 -15.32134 -14.86529 -14.64840 -14.35028 -13.93867 -13.50962 -13.37051 -13.30309 -13.07618 -12.74857 -12.56579 -12.50818 -12.23543 -12.08543 -11.88349 -11.72637 -11.55743 -11.19529 -11.15864 -10.61247 -9.33338 -8.96179 -8.21829 -6.31407 1.38827 1.39332 1.53171 2.38640 3.10312 3.24786 3.38809 3.80339 3.94392 3.96296 4.32692 4.38115 4.43615 4.51027 4.59771 4.70529 4.73320 4.83126 4.93289 5.05097 5.07999 5.10538 5.15592 5.18614 5.22100 5.31173 5.39144 5.58320 5.66618 5.94359 6.07162 6.37484 6.48804 6.68413 6.86165 7.38269 8.89368 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.035899 B = 0.008409 C = 0.007634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.768141 B = 3329.041287 C = 3667.068042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.088 3.912 3 H 0.015 0.985 4 C -0.100 4.100 5 H 0.041 0.959 6 C -0.123 4.123 7 C 0.046 3.954 8 N -0.688 5.688 9 C 0.072 3.928 10 N -0.539 5.539 11 C 0.037 3.963 12 C 0.210 3.790 13 C -0.520 4.520 14 H 0.063 0.937 15 C -0.001 4.001 16 N -0.936 5.936 17 Si 0.969 3.031 18 H -0.263 1.263 19 H -0.278 1.278 20 H -0.279 1.279 21 H 0.066 0.934 22 H 0.078 0.922 23 H 0.060 0.940 24 H 0.075 0.925 25 H 0.094 0.906 26 H 0.096 0.904 27 H 0.040 0.960 28 H 0.341 0.659 29 H 0.081 0.919 30 H 0.026 0.974 31 H 0.008 0.992 32 H 0.054 0.946 33 H 0.083 0.917 34 H -0.048 1.048 35 H 0.007 0.993 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.603 0.423 7.434 12.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.021 4.021 3 H 0.033 0.967 4 C -0.120 4.120 5 H 0.059 0.941 6 C -0.161 4.161 7 C -0.082 4.082 8 N -0.317 5.317 9 C -0.057 4.057 10 N -0.263 5.263 11 C -0.111 4.111 12 C 0.083 3.917 13 C -0.558 4.558 14 H 0.081 0.919 15 C -0.198 4.198 16 N -0.576 5.576 17 Si 0.793 3.207 18 H -0.186 1.186 19 H -0.204 1.204 20 H -0.205 1.205 21 H 0.085 0.915 22 H 0.097 0.903 23 H 0.079 0.921 24 H 0.094 0.906 25 H 0.112 0.888 26 H 0.114 0.886 27 H 0.059 0.941 28 H 0.156 0.844 29 H 0.099 0.901 30 H 0.045 0.955 31 H 0.027 0.973 32 H 0.073 0.927 33 H 0.102 0.898 34 H -0.030 1.030 35 H 0.025 0.975 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -11.252 0.083 7.424 13.481 hybrid contribution 2.329 0.501 -0.811 2.517 sum -8.923 0.585 6.613 11.122 Atomic orbital electron populations 1.21996 0.92322 1.02875 1.02397 1.21550 0.96753 0.93735 0.90101 0.96711 1.22301 0.98331 0.96374 0.95013 0.94069 1.22906 1.02294 0.97681 0.93226 1.22875 0.99998 0.89291 0.96077 1.62006 1.60766 1.06776 1.02135 1.22365 0.99189 0.94255 0.89932 1.62109 1.06167 1.55723 1.02343 1.22277 0.99382 0.96219 0.93215 1.19354 0.83808 0.92736 0.95768 1.21522 0.92518 1.23700 1.18084 0.91870 1.25926 0.97060 0.97604 0.99244 1.70101 1.02904 1.41837 1.42806 0.85342 0.78338 0.78442 0.78559 1.18646 1.20422 1.20476 0.91498 0.90298 0.92093 0.90613 0.88755 0.88597 0.94130 0.84355 0.90130 0.95530 0.97314 0.92707 0.89804 1.03029 0.97547 0.92799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.82 7.98 71.98 0.57 -3.25 16 2 C 0.09 3.15 2.01 44.91 0.09 3.24 16 3 H 0.01 0.58 8.12 -2.38 -0.02 0.56 16 4 C -0.10 -3.46 2.59 -9.62 -0.02 -3.48 16 5 H 0.04 1.71 6.57 -2.39 -0.02 1.70 16 6 C -0.12 -3.17 6.39 31.98 0.20 -2.97 16 7 C 0.05 1.10 7.57 86.77 0.66 1.76 16 8 N -0.69 -18.77 7.39 -504.45 -3.73 -22.50 16 9 C 0.07 2.39 6.66 86.64 0.58 2.97 16 10 N -0.54 -23.47 4.27 -901.61 -3.85 -27.32 16 11 C 0.04 1.45 8.57 127.69 1.09 2.54 16 12 C 0.21 11.41 4.59 85.55 0.39 11.80 16 13 C -0.52 -29.93 8.37 25.60 0.21 -29.71 16 14 H 0.06 3.57 7.18 -2.91 -0.02 3.55 16 15 C 0.00 -0.04 5.46 84.65 0.46 0.42 16 16 N -0.94 -57.19 13.29 21.45 0.28 -56.91 16 17 Si 0.97 44.89 29.54 68.60 2.03 46.92 16 18 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 19 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 20 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 21 H 0.07 1.87 6.12 -2.38 -0.01 1.85 16 22 H 0.08 1.80 5.99 -2.39 -0.01 1.79 16 23 H 0.06 1.58 6.44 -2.38 -0.02 1.56 16 24 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 25 H 0.09 2.17 5.61 -2.38 -0.01 2.16 16 26 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 27 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.34 8.47 8.91 -89.69 -0.80 7.67 16 29 H 0.08 2.73 5.76 -2.39 -0.01 2.72 16 30 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.01 0.32 8.12 -2.39 -0.02 0.30 16 32 H 0.05 2.33 6.65 -2.39 -0.02 2.31 16 33 H 0.08 2.67 6.58 -2.39 -0.02 2.65 16 34 H -0.05 -2.88 8.12 -2.39 -0.02 -2.90 16 35 H 0.01 0.38 6.19 -2.39 -0.01 0.37 16 36 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 Total: -1.00 -64.25 273.24 -0.77 -65.02 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: 0.26 Total: 11.47 kcal Atomic # 6 Polarization: -20.92 SS G_CDS: 4.24 Total: -16.68 kcal Atomic # 7 Polarization: -99.43 SS G_CDS: -7.30 Total: -106.73 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Total: -64.25 -0.77 -65.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400635119.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.194 kcal (2) G-P(sol) polarization free energy of solvation -64.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds