Wall clock time and date at job start Mon Mar 30 2020 03:13:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.46811 * 2 1 4 4 C 1.52994 * 109.47099 * 120.00751 * 2 1 3 5 5 H 1.08999 * 110.27881 * 59.36255 * 4 2 1 6 6 C 1.54602 * 110.30785 * 297.16477 * 4 2 1 7 7 C 1.54938 * 102.92148 * 219.12976 * 6 4 2 8 8 N 1.48531 * 103.22599 * 37.41589 * 7 6 4 9 9 C 1.47900 * 105.82223 * 320.78860 * 8 7 6 10 10 N 1.46900 * 109.46881 * 240.00430 * 2 1 3 11 11 C 1.46897 * 111.00122 * 306.04693 * 10 2 1 12 12 C 1.46907 * 111.00174 * 69.99892 * 10 2 1 13 13 C 1.50695 * 109.47119 * 169.99800 * 12 10 2 14 14 H 1.07995 * 120.00496 * 0.02562 * 13 12 10 15 15 C 1.37880 * 119.99572 * 180.02562 * 13 12 10 16 16 N 1.31511 * 120.00327 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 119.99951 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.47297 * 59.99744 * 17 15 13 19 19 H 1.48503 * 109.47261 * 299.99924 * 17 15 13 20 20 H 1.48500 * 109.47454 * 179.97438 * 17 15 13 21 21 H 1.09002 * 109.46944 * 299.99269 * 1 2 3 22 22 H 1.08999 * 109.47508 * 59.99180 * 1 2 3 23 23 H 1.09000 * 109.47248 * 179.97438 * 1 2 3 24 24 H 1.08998 * 110.72513 * 337.49024 * 6 4 2 25 25 H 1.09005 * 110.71788 * 100.77254 * 6 4 2 26 26 H 1.09003 * 110.66785 * 278.97954 * 7 6 4 27 27 H 1.08995 * 110.66349 * 155.85099 * 7 6 4 28 28 H 1.00896 * 111.00209 * 81.30692 * 8 7 6 29 29 H 1.08994 * 109.91999 * 265.97885 * 9 8 7 30 30 H 1.09001 * 110.07722 * 144.77449 * 9 8 7 31 31 H 1.09003 * 109.47400 * 183.95158 * 11 10 2 32 32 H 1.08998 * 109.46894 * 303.95011 * 11 10 2 33 33 H 1.09004 * 109.47284 * 63.95403 * 11 10 2 34 34 H 1.09002 * 109.46929 * 49.99750 * 12 10 2 35 35 H 1.08998 * 109.47035 * 290.00562 * 12 10 2 36 36 H 0.97006 * 119.99995 * 359.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7214 1.2491 5 1 1.6747 -1.7482 1.2680 6 6 1.5947 0.0323 2.5234 7 6 2.8356 -0.0809 3.4443 8 7 3.9736 0.0498 2.4988 9 6 3.5794 -0.7010 1.2870 10 7 2.0196 -0.6924 -1.1995 11 6 1.4342 -2.0353 -1.3080 12 6 1.7528 0.0974 -2.4091 13 6 2.4773 -0.5160 -3.5795 14 1 3.0757 -1.4040 -3.4390 15 6 2.3761 0.0565 -4.8297 16 7 1.6478 1.1381 -5.0007 17 14 3.2735 -0.7042 -6.2807 18 1 2.7963 -2.0958 -6.4836 19 1 4.7334 -0.7163 -6.0088 20 1 3.0039 0.0942 -7.5034 21 1 -0.3633 0.5137 0.8901 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3634 -1.0277 -0.0005 24 1 1.3759 1.0760 2.2976 25 1 0.7316 -0.4544 2.9775 26 1 2.8582 -1.0505 3.9418 27 1 2.8475 0.7279 4.1748 28 1 4.1536 1.0185 2.2814 29 1 3.9630 -1.7198 1.3402 30 1 3.9662 -0.2047 0.3970 31 1 1.8663 -2.5519 -2.1651 32 1 1.6466 -2.5987 -0.3994 33 1 0.3554 -1.9519 -1.4400 34 1 2.1024 1.1191 -2.2604 35 1 0.6813 0.1056 -2.6087 36 1 1.1815 1.5330 -4.2473 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000400635120.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:05 Heat of formation + Delta-G solvation = -3.749080 kcal Electronic energy + Delta-G solvation = -14880.483139 eV Core-core repulsion = 12592.007641 eV Total energy + Delta-G solvation = -2288.475498 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.21531 -36.61410 -33.09018 -30.98128 -28.86253 -27.96062 -26.81937 -24.97655 -22.65538 -21.61801 -20.56044 -18.83695 -16.78139 -16.08609 -15.74566 -14.86668 -14.08986 -13.88093 -13.70967 -13.50304 -13.07079 -12.63392 -12.16109 -11.88703 -11.52990 -11.41731 -11.18756 -11.15241 -10.90289 -10.72600 -10.64158 -10.52747 -10.44850 -10.09238 -9.87121 -8.66271 -8.49409 -8.36756 -7.28257 -6.36345 -4.04853 3.44851 3.47233 3.65636 4.38826 4.50564 4.67722 4.84448 5.06488 5.25538 5.38234 5.40628 5.50020 5.57660 5.72803 5.74268 5.83256 5.92712 5.99405 6.07794 6.14201 6.20639 6.31337 6.38477 6.51824 6.60963 6.69112 6.91347 7.02154 7.12841 7.46592 7.81058 8.00053 8.34116 8.59642 8.87773 9.65770 11.02701 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.047164 B = 0.007293 C = 0.006935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 593.530177 B = 3838.630115 C = 4036.699698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.086 3.914 3 H 0.070 0.930 4 C -0.106 4.106 5 H 0.073 0.927 6 C -0.152 4.152 7 C 0.042 3.958 8 N -0.680 5.680 9 C 0.054 3.946 10 N -0.525 5.525 11 C 0.035 3.965 12 C 0.183 3.817 13 C -0.587 4.587 14 H 0.057 0.943 15 C 0.013 3.987 16 N -0.915 5.915 17 Si 1.072 2.928 18 H -0.289 1.289 19 H -0.287 1.287 20 H -0.283 1.283 21 H 0.050 0.950 22 H 0.056 0.944 23 H 0.055 0.945 24 H 0.066 0.934 25 H 0.067 0.933 26 H 0.075 0.925 27 H 0.069 0.931 28 H 0.334 0.666 29 H 0.069 0.931 30 H 0.084 0.916 31 H 0.072 0.928 32 H 0.046 0.954 33 H 0.014 0.986 34 H 0.016 0.984 35 H -0.018 1.018 36 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.581 -2.684 13.394 13.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.023 4.023 3 H 0.088 0.912 4 C -0.126 4.126 5 H 0.091 0.909 6 C -0.192 4.192 7 C -0.088 4.088 8 N -0.307 5.307 9 C -0.075 4.075 10 N -0.248 5.248 11 C -0.113 4.113 12 C 0.058 3.942 13 C -0.626 4.626 14 H 0.075 0.925 15 C -0.190 4.190 16 N -0.552 5.552 17 Si 0.900 3.100 18 H -0.215 1.215 19 H -0.213 1.213 20 H -0.209 1.209 21 H 0.069 0.931 22 H 0.075 0.925 23 H 0.074 0.926 24 H 0.085 0.915 25 H 0.086 0.914 26 H 0.094 0.906 27 H 0.087 0.913 28 H 0.149 0.851 29 H 0.088 0.912 30 H 0.102 0.898 31 H 0.091 0.909 32 H 0.065 0.935 33 H 0.033 0.967 34 H 0.034 0.966 35 H -0.001 1.001 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.684 -3.087 12.088 12.494 hybrid contribution -2.069 0.519 1.145 2.421 sum -1.385 -2.568 13.232 13.550 Atomic orbital electron populations 1.22463 0.98517 1.01758 1.01466 1.21738 0.92005 0.97595 0.91000 0.91189 1.22419 0.97000 0.99604 0.93571 0.90856 1.23178 0.99015 1.00743 0.96219 1.23081 0.88563 1.01761 0.95368 1.62754 1.38916 1.16846 1.12148 1.22680 0.92993 0.99511 0.92359 1.62227 1.57168 1.02790 1.02644 1.22244 0.96494 0.91657 1.00919 1.19818 0.94212 0.93079 0.87113 1.21983 1.32404 1.14437 0.93746 0.92504 1.25849 0.97010 0.95623 1.00544 1.70802 1.29501 1.20028 1.34856 0.83497 0.75750 0.75291 0.75451 1.21519 1.21349 1.20870 0.93112 0.92500 0.92620 0.91526 0.91380 0.90620 0.91284 0.85067 0.91220 0.89757 0.90943 0.93512 0.96709 0.96575 1.00060 0.92421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.00 8.25 37.16 0.31 -2.69 16 2 C 0.09 1.50 1.55 -67.72 -0.11 1.40 16 3 H 0.07 1.29 7.92 -51.93 -0.41 0.88 16 4 C -0.11 -1.53 2.32 -89.26 -0.21 -1.74 16 5 H 0.07 1.08 6.56 -51.93 -0.34 0.74 16 6 C -0.15 -1.82 5.60 -24.87 -0.14 -1.95 16 7 C 0.04 0.47 7.55 -1.90 -0.01 0.46 16 8 N -0.68 -9.03 7.51 -110.09 -0.83 -9.85 16 9 C 0.05 0.81 6.95 -2.75 -0.02 0.79 16 10 N -0.53 -11.13 4.13 -236.33 -0.98 -12.11 16 11 C 0.04 0.69 8.48 60.06 0.51 1.20 16 12 C 0.18 4.73 3.60 -4.97 -0.02 4.71 16 13 C -0.59 -16.70 8.52 -34.44 -0.29 -17.00 16 14 H 0.06 1.62 7.10 -52.49 -0.37 1.24 16 15 C 0.01 0.38 5.46 -17.82 -0.10 0.28 16 16 N -0.92 -28.07 13.65 55.43 0.76 -27.31 16 17 Si 1.07 25.48 29.90 -169.99 -5.08 20.40 16 18 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 19 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 20 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 21 H 0.05 0.71 7.26 -51.93 -0.38 0.33 16 22 H 0.06 1.05 6.91 -51.93 -0.36 0.69 16 23 H 0.05 0.89 6.41 -51.93 -0.33 0.56 16 24 H 0.07 0.80 7.73 -51.93 -0.40 0.40 16 25 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 27 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.33 4.16 8.92 -39.29 -0.35 3.81 16 29 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.08 1.46 7.41 -51.93 -0.38 1.08 16 31 H 0.07 1.54 6.86 -51.93 -0.36 1.19 16 32 H 0.05 0.79 6.33 -51.93 -0.33 0.46 16 33 H 0.01 0.29 6.46 -51.93 -0.34 -0.05 16 34 H 0.02 0.44 7.80 -51.93 -0.40 0.04 16 35 H -0.02 -0.50 6.93 -51.93 -0.36 -0.86 16 36 H 0.27 8.13 7.22 -40.82 -0.29 7.83 16 LS Contribution 275.17 15.07 4.15 4.15 Total: -1.00 -29.97 275.17 -7.96 -37.92 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: -5.90 Total: 1.34 kcal Atomic # 6 Polarization: -14.46 SS G_CDS: -0.08 Total: -14.54 kcal Atomic # 7 Polarization: -48.22 SS G_CDS: -1.05 Total: -49.27 kcal Atomic # 14 Polarization: 25.48 SS G_CDS: -5.08 Total: 20.40 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -29.97 -7.96 -37.92 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400635120.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.173 kcal (2) G-P(sol) polarization free energy of solvation -29.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds