Wall clock time and date at job start Mon Mar 30 2020 03:13:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 109.46878 * 2 1 4 4 C 1.53001 * 109.47032 * 240.00481 * 2 1 3 5 5 H 1.08997 * 110.36939 * 303.00463 * 4 2 1 6 6 C 1.54254 * 110.32881 * 65.19252 * 4 2 1 7 7 C 1.54374 * 105.06428 * 118.89299 * 6 4 2 8 8 N 1.48559 * 104.59553 * 23.85705 * 7 6 4 9 9 C 1.48569 * 104.21925 * 320.51283 * 8 7 6 10 10 N 1.46902 * 109.47517 * 119.99945 * 2 1 3 11 11 C 1.46899 * 110.99619 * 290.31103 * 10 2 1 12 12 C 1.46889 * 110.99894 * 54.26930 * 10 2 1 13 13 C 1.50701 * 109.47278 * 170.00088 * 12 10 2 14 14 H 1.07995 * 119.99597 * 359.97438 * 13 12 10 15 15 C 1.37871 * 120.00120 * 179.97438 * 13 12 10 16 16 N 1.31516 * 120.00270 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 120.00060 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47095 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47238 * 119.99869 * 17 15 13 20 20 H 1.48505 * 109.47049 * 239.99914 * 17 15 13 21 21 H 1.08998 * 109.47857 * 60.00198 * 1 2 3 22 22 H 1.09007 * 109.46878 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47204 * 299.99538 * 1 2 3 24 24 H 1.08998 * 110.32196 * 237.79870 * 6 4 2 25 25 H 1.09002 * 110.32020 * 359.97438 * 6 4 2 26 26 H 1.09001 * 110.41028 * 142.63070 * 7 6 4 27 27 H 1.08998 * 110.41491 * 264.95410 * 7 6 4 28 28 H 1.00896 * 111.00240 * 200.96131 * 8 7 6 29 29 H 1.08997 * 110.41006 * 280.70722 * 9 8 7 30 30 H 1.09004 * 110.41149 * 158.25652 * 9 8 7 31 31 H 1.09002 * 109.46838 * 65.98745 * 11 10 2 32 32 H 1.09008 * 109.46580 * 185.97645 * 11 10 2 33 33 H 1.08992 * 109.47669 * 305.98022 * 11 10 2 34 34 H 1.09006 * 109.46970 * 290.00117 * 12 10 2 35 35 H 1.09003 * 109.47842 * 49.99682 * 12 10 2 36 36 H 0.97003 * 119.99971 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 1 1.6416 -1.7349 -1.2914 6 6 1.6464 0.0623 -2.5185 7 6 2.9851 0.4401 -3.1880 8 7 3.9526 -0.5694 -2.6863 9 6 3.5835 -0.7508 -1.2587 10 7 2.0197 -0.6925 1.1994 11 6 1.7464 0.0939 2.4097 12 6 1.4402 -2.0382 1.3038 13 6 2.1424 -2.8043 2.3952 14 1 2.9397 -2.3381 2.9549 15 6 1.7669 -4.1001 2.6791 16 7 0.7956 -4.6676 1.9978 17 14 2.6368 -5.0494 4.0324 18 1 3.6845 -4.1925 4.6434 19 1 1.6522 -5.4448 5.0713 20 1 3.2658 -6.2659 3.4580 21 1 -0.3635 0.5138 -0.8899 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5137 0.8900 24 1 1.0547 -0.5669 -3.1834 25 1 1.0894 0.9604 -2.2514 26 1 2.8986 0.3775 -4.2728 27 1 3.2899 1.4430 -2.8890 28 1 4.9010 -0.2367 -2.7751 29 1 3.9831 0.0649 -0.6562 30 1 3.9475 -1.7101 -0.8909 31 1 0.6696 0.1565 2.5668 32 1 2.2114 -0.3888 3.2693 33 1 2.1553 1.0973 2.2912 34 1 0.3790 -1.9594 1.5402 35 1 1.5633 -2.5615 0.3556 36 1 0.5312 -5.5792 2.1978 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000400635122.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:07 Heat of formation + Delta-G solvation = 0.910352 kcal Electronic energy + Delta-G solvation = -14972.607751 eV Core-core repulsion = 12684.334301 eV Total energy + Delta-G solvation = -2288.273450 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.93497 -36.39129 -32.71388 -31.15753 -28.74204 -27.94490 -27.08518 -24.74388 -22.72593 -21.21652 -20.40276 -18.51289 -16.53120 -16.13456 -15.43694 -14.59646 -14.02222 -13.74663 -13.62485 -13.37998 -12.76729 -12.38778 -12.09025 -11.95435 -11.60128 -11.35325 -11.09739 -10.98477 -10.83054 -10.69429 -10.54213 -10.34978 -10.20910 -10.02983 -9.56538 -9.08977 -8.38459 -8.32074 -7.14296 -5.99002 -3.99497 3.32774 3.40301 3.44888 4.45427 4.56430 4.87138 5.01255 5.22726 5.36562 5.42161 5.50040 5.71454 5.74676 5.87181 5.99514 6.01444 6.11727 6.18541 6.25970 6.26498 6.31063 6.48173 6.59092 6.72392 6.77506 6.84104 7.07774 7.38569 7.43334 7.55396 7.85085 8.15492 8.26462 8.62001 9.08645 9.64437 11.11813 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.036026 B = 0.008457 C = 0.007853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.022463 B = 3309.877094 C = 3564.703268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.089 3.911 3 H 0.062 0.938 4 C -0.080 4.080 5 H 0.084 0.916 6 C -0.121 4.121 7 C 0.036 3.964 8 N -0.673 5.673 9 C 0.057 3.943 10 N -0.534 5.534 11 C 0.038 3.962 12 C 0.190 3.810 13 C -0.506 4.506 14 H 0.062 0.938 15 C 0.054 3.946 16 N -0.898 5.898 17 Si 0.895 3.105 18 H -0.273 1.273 19 H -0.286 1.286 20 H -0.284 1.284 21 H 0.049 0.951 22 H 0.066 0.934 23 H 0.049 0.951 24 H 0.067 0.933 25 H 0.066 0.934 26 H 0.072 0.928 27 H 0.034 0.966 28 H 0.330 0.670 29 H 0.042 0.958 30 H 0.086 0.914 31 H 0.013 0.987 32 H 0.071 0.929 33 H 0.040 0.960 34 H -0.007 1.007 35 H 0.034 0.966 36 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.959 10.220 -6.524 12.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.021 4.021 3 H 0.080 0.920 4 C -0.099 4.099 5 H 0.103 0.897 6 C -0.159 4.159 7 C -0.094 4.094 8 N -0.301 5.301 9 C -0.071 4.071 10 N -0.258 5.258 11 C -0.110 4.110 12 C 0.065 3.935 13 C -0.544 4.544 14 H 0.080 0.920 15 C -0.146 4.146 16 N -0.538 5.538 17 Si 0.723 3.277 18 H -0.197 1.197 19 H -0.212 1.212 20 H -0.210 1.210 21 H 0.068 0.932 22 H 0.085 0.915 23 H 0.069 0.931 24 H 0.086 0.914 25 H 0.084 0.916 26 H 0.090 0.910 27 H 0.052 0.948 28 H 0.144 0.856 29 H 0.060 0.940 30 H 0.104 0.896 31 H 0.032 0.968 32 H 0.090 0.910 33 H 0.059 0.941 34 H 0.011 0.989 35 H 0.052 0.948 36 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 2.060 9.376 -6.847 11.791 hybrid contribution -0.256 0.307 1.263 1.325 sum 1.805 9.684 -5.584 11.323 Atomic orbital electron populations 1.22477 0.98365 1.02825 1.00673 1.21697 0.92146 0.96674 0.91553 0.91992 1.21885 0.95223 1.00211 0.92622 0.89747 1.22388 0.96515 0.99988 0.97013 1.22876 0.93383 0.93466 0.99657 1.63771 1.05795 1.43277 1.17265 1.22780 0.95257 1.02014 0.87064 1.62333 1.58806 1.04431 1.00222 1.22181 0.98039 0.96143 0.94667 1.19781 0.92891 0.83139 0.97661 1.21234 1.18175 0.97575 1.17449 0.91997 1.24976 0.95290 0.97658 0.96719 1.69967 1.28950 1.13965 1.40935 0.86489 0.79499 0.79914 0.81796 1.19739 1.21206 1.21046 0.93242 0.91508 0.93148 0.91421 0.91573 0.90953 0.94795 0.85616 0.93971 0.89573 0.96811 0.91021 0.94090 0.98905 0.94826 0.93074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.15 8.27 37.15 0.31 -2.84 16 2 C 0.09 1.58 1.57 -67.71 -0.11 1.47 16 3 H 0.06 1.02 7.99 -51.93 -0.42 0.61 16 4 C -0.08 -1.38 2.33 -89.24 -0.21 -1.59 16 5 H 0.08 1.70 6.55 -51.93 -0.34 1.36 16 6 C -0.12 -1.68 6.13 -25.35 -0.16 -1.84 16 7 C 0.04 0.46 7.47 -2.19 -0.02 0.44 16 8 N -0.67 -9.83 7.62 -109.65 -0.84 -10.66 16 9 C 0.06 0.97 6.64 -2.17 -0.01 0.96 16 10 N -0.53 -11.33 4.31 -236.33 -1.02 -12.35 16 11 C 0.04 0.75 9.00 60.06 0.54 1.29 16 12 C 0.19 4.87 3.68 -4.98 -0.02 4.85 16 13 C -0.51 -14.19 8.54 -34.44 -0.29 -14.48 16 14 H 0.06 1.73 7.10 -52.49 -0.37 1.36 16 15 C 0.05 1.55 5.46 -17.82 -0.10 1.46 16 16 N -0.90 -26.78 13.29 55.43 0.74 -26.04 16 17 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16 18 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 19 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 20 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 21 H 0.05 0.71 6.84 -51.93 -0.36 0.36 16 22 H 0.07 1.30 6.56 -51.93 -0.34 0.96 16 23 H 0.05 0.85 6.81 -51.93 -0.35 0.49 16 24 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 25 H 0.07 0.84 6.75 -51.93 -0.35 0.49 16 26 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 27 H 0.03 0.40 8.14 -51.93 -0.42 -0.03 16 28 H 0.33 4.10 8.92 -39.29 -0.35 3.75 16 29 H 0.04 0.70 7.86 -51.93 -0.41 0.29 16 30 H 0.09 1.66 8.14 -51.93 -0.42 1.24 16 31 H 0.01 0.26 6.86 -51.93 -0.36 -0.09 16 32 H 0.07 1.49 6.92 -51.92 -0.36 1.13 16 33 H 0.04 0.68 8.02 -51.93 -0.42 0.27 16 34 H -0.01 -0.19 6.81 -51.93 -0.35 -0.54 16 35 H 0.03 0.93 6.15 -51.93 -0.32 0.61 16 36 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 276.16 15.07 4.16 4.16 Total: -1.00 -29.38 276.16 -7.96 -37.34 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: -5.92 Total: 1.05 kcal Atomic # 6 Polarization: -10.22 SS G_CDS: -0.06 Total: -10.28 kcal Atomic # 7 Polarization: -47.94 SS G_CDS: -1.12 Total: -49.06 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -29.38 -7.96 -37.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400635122.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.249 kcal (2) G-P(sol) polarization free energy of solvation -29.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.338 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds