Wall clock time and date at job start Mon Mar 30 2020 03:13:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 109.46878 * 2 1 4 4 C 1.53001 * 109.47032 * 240.00481 * 2 1 3 5 5 H 1.08997 * 110.36939 * 303.00463 * 4 2 1 6 6 C 1.54254 * 110.32881 * 65.19252 * 4 2 1 7 7 C 1.54374 * 105.06428 * 118.89299 * 6 4 2 8 8 N 1.48559 * 104.59553 * 23.85705 * 7 6 4 9 9 C 1.48569 * 104.21925 * 320.51283 * 8 7 6 10 10 N 1.46902 * 109.47517 * 119.99945 * 2 1 3 11 11 C 1.46899 * 110.99619 * 290.31103 * 10 2 1 12 12 C 1.46889 * 110.99894 * 54.26930 * 10 2 1 13 13 C 1.50701 * 109.47278 * 170.00088 * 12 10 2 14 14 H 1.07995 * 119.99597 * 359.97438 * 13 12 10 15 15 C 1.37871 * 120.00120 * 179.97438 * 13 12 10 16 16 N 1.31516 * 120.00270 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 120.00060 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47095 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47238 * 119.99869 * 17 15 13 20 20 H 1.48505 * 109.47049 * 239.99914 * 17 15 13 21 21 H 1.08998 * 109.47857 * 60.00198 * 1 2 3 22 22 H 1.09007 * 109.46878 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47204 * 299.99538 * 1 2 3 24 24 H 1.08998 * 110.32196 * 237.79870 * 6 4 2 25 25 H 1.09002 * 110.32020 * 359.97438 * 6 4 2 26 26 H 1.09001 * 110.41028 * 142.63070 * 7 6 4 27 27 H 1.08998 * 110.41491 * 264.95410 * 7 6 4 28 28 H 1.00896 * 111.00240 * 200.96131 * 8 7 6 29 29 H 1.08997 * 110.41006 * 280.70722 * 9 8 7 30 30 H 1.09004 * 110.41149 * 158.25652 * 9 8 7 31 31 H 1.09002 * 109.46838 * 65.98745 * 11 10 2 32 32 H 1.09008 * 109.46580 * 185.97645 * 11 10 2 33 33 H 1.08992 * 109.47669 * 305.98022 * 11 10 2 34 34 H 1.09006 * 109.46970 * 290.00117 * 12 10 2 35 35 H 1.09003 * 109.47842 * 49.99682 * 12 10 2 36 36 H 0.97003 * 119.99971 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 1 1.6416 -1.7349 -1.2914 6 6 1.6464 0.0623 -2.5185 7 6 2.9851 0.4401 -3.1880 8 7 3.9526 -0.5694 -2.6863 9 6 3.5835 -0.7508 -1.2587 10 7 2.0197 -0.6925 1.1994 11 6 1.7464 0.0939 2.4097 12 6 1.4402 -2.0382 1.3038 13 6 2.1424 -2.8043 2.3952 14 1 2.9397 -2.3381 2.9549 15 6 1.7669 -4.1001 2.6791 16 7 0.7956 -4.6676 1.9978 17 14 2.6368 -5.0494 4.0324 18 1 3.6845 -4.1925 4.6434 19 1 1.6522 -5.4448 5.0713 20 1 3.2658 -6.2659 3.4580 21 1 -0.3635 0.5138 -0.8899 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5137 0.8900 24 1 1.0547 -0.5669 -3.1834 25 1 1.0894 0.9604 -2.2514 26 1 2.8986 0.3775 -4.2728 27 1 3.2899 1.4430 -2.8890 28 1 4.9010 -0.2367 -2.7751 29 1 3.9831 0.0649 -0.6562 30 1 3.9475 -1.7101 -0.8909 31 1 0.6696 0.1565 2.5668 32 1 2.2114 -0.3888 3.2693 33 1 2.1553 1.0973 2.2912 34 1 0.3790 -1.9594 1.5402 35 1 1.5633 -2.5615 0.3556 36 1 0.5312 -5.5792 2.1978 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000400635122.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:07 Heat of formation + Delta-G solvation = -20.804238 kcal Electronic energy + Delta-G solvation = -14973.549366 eV Core-core repulsion = 12684.334301 eV Total energy + Delta-G solvation = -2289.215065 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.33236 -37.87657 -34.80110 -32.67882 -29.97415 -29.53481 -28.83854 -26.47350 -24.54310 -22.45139 -21.81720 -20.04088 -18.59281 -17.40382 -16.90624 -16.56264 -15.50466 -15.34826 -15.24476 -14.72928 -14.31631 -14.04073 -13.77991 -13.36646 -12.97397 -12.91837 -12.72996 -12.63727 -12.35556 -12.26450 -12.19311 -12.00922 -11.68478 -11.66715 -11.26582 -11.01490 -10.57180 -9.46181 -8.89390 -8.18255 -6.27327 1.39402 1.40473 1.53539 2.40769 3.14117 3.32081 3.43376 3.77415 4.02837 4.06326 4.28681 4.36592 4.48580 4.52202 4.62709 4.67781 4.77698 4.84694 4.94781 4.95981 5.04195 5.09574 5.15050 5.19001 5.26337 5.37244 5.40820 5.50431 5.68378 5.87850 6.11527 6.41537 6.51375 6.73364 6.90822 7.42097 8.92615 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.036026 B = 0.008457 C = 0.007853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.022463 B = 3309.877094 C = 3564.703268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.089 3.911 3 H 0.091 0.909 4 C -0.082 4.082 5 H 0.041 0.959 6 C -0.115 4.115 7 C 0.039 3.961 8 N -0.683 5.683 9 C 0.065 3.935 10 N -0.542 5.542 11 C 0.040 3.960 12 C 0.213 3.787 13 C -0.522 4.522 14 H 0.060 0.940 15 C 0.000 4.000 16 N -0.934 5.934 17 Si 0.965 3.035 18 H -0.263 1.263 19 H -0.279 1.279 20 H -0.280 1.280 21 H 0.081 0.919 22 H 0.030 0.970 23 H 0.052 0.948 24 H 0.066 0.934 25 H 0.087 0.913 26 H 0.090 0.910 27 H 0.055 0.945 28 H 0.343 0.657 29 H 0.048 0.952 30 H 0.049 0.951 31 H 0.011 0.989 32 H 0.053 0.947 33 H 0.078 0.922 34 H -0.036 1.036 35 H 0.005 0.995 36 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.734 12.069 -6.782 14.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.020 4.020 3 H 0.109 0.891 4 C -0.101 4.101 5 H 0.060 0.940 6 C -0.154 4.154 7 C -0.090 4.090 8 N -0.313 5.313 9 C -0.064 4.064 10 N -0.265 5.265 11 C -0.108 4.108 12 C 0.087 3.913 13 C -0.561 4.561 14 H 0.079 0.921 15 C -0.198 4.198 16 N -0.575 5.575 17 Si 0.790 3.210 18 H -0.187 1.187 19 H -0.204 1.204 20 H -0.206 1.206 21 H 0.100 0.900 22 H 0.049 0.951 23 H 0.071 0.929 24 H 0.085 0.915 25 H 0.106 0.894 26 H 0.108 0.892 27 H 0.073 0.927 28 H 0.159 0.841 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.029 0.971 32 H 0.072 0.928 33 H 0.096 0.904 34 H -0.018 1.018 35 H 0.023 0.977 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.847 11.253 -7.114 13.614 hybrid contribution -0.501 -0.228 1.289 1.402 sum 2.346 11.024 -5.825 12.687 Atomic orbital electron populations 1.22385 0.97791 1.00970 1.02361 1.21833 0.92621 0.97492 0.90049 0.89123 1.21811 0.95423 0.98526 0.94371 0.94034 1.22381 0.97660 1.00205 0.95105 1.22947 0.91767 0.93765 1.00497 1.63692 1.07237 1.44900 1.15465 1.22542 0.94903 1.00261 0.88691 1.62227 1.58803 1.03185 1.02331 1.22190 0.97963 0.97393 0.93269 1.19313 0.91066 0.85494 0.95408 1.21581 1.18221 0.98245 1.18021 0.92142 1.25886 0.95977 0.98745 0.99164 1.70099 1.30415 1.14418 1.42604 0.85392 0.78513 0.78344 0.78716 1.18748 1.20443 1.20589 0.90040 0.95113 0.92880 0.91549 0.89425 0.89187 0.92715 0.84079 0.93390 0.93226 0.97081 0.92799 0.90376 1.01843 0.97706 0.92880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.89 8.27 71.98 0.59 -5.29 16 2 C 0.09 3.06 1.57 44.91 0.07 3.13 16 3 H 0.09 2.67 7.99 -2.38 -0.02 2.65 16 4 C -0.08 -2.80 2.33 -9.90 -0.02 -2.83 16 5 H 0.04 1.77 6.55 -2.39 -0.02 1.76 16 6 C -0.12 -2.95 6.13 31.49 0.19 -2.76 16 7 C 0.04 0.88 7.47 86.45 0.65 1.52 16 8 N -0.68 -18.88 7.62 -500.83 -3.82 -22.70 16 9 C 0.07 2.19 6.64 86.45 0.57 2.76 16 10 N -0.54 -23.11 4.31 -901.62 -3.88 -26.99 16 11 C 0.04 1.53 9.00 127.69 1.15 2.68 16 12 C 0.21 11.42 3.68 85.56 0.31 11.73 16 13 C -0.52 -30.10 8.54 25.60 0.22 -29.88 16 14 H 0.06 3.43 7.10 -2.91 -0.02 3.41 16 15 C 0.00 -0.01 5.46 84.65 0.46 0.46 16 16 N -0.93 -57.40 13.29 21.45 0.28 -57.12 16 17 Si 0.97 45.25 29.54 68.60 2.03 47.27 16 18 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16 19 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 20 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 21 H 0.08 2.16 6.84 -2.39 -0.02 2.15 16 22 H 0.03 1.23 6.56 -2.38 -0.02 1.21 16 23 H 0.05 1.72 6.81 -2.39 -0.02 1.70 16 24 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 25 H 0.09 1.88 6.75 -2.39 -0.02 1.86 16 26 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 27 H 0.05 1.03 8.14 -2.39 -0.02 1.02 16 28 H 0.34 7.84 8.92 -89.70 -0.80 7.04 16 29 H 0.05 1.53 7.86 -2.39 -0.02 1.51 16 30 H 0.05 2.00 8.14 -2.38 -0.02 1.98 16 31 H 0.01 0.41 6.86 -2.39 -0.02 0.40 16 32 H 0.05 2.22 6.92 -2.38 -0.02 2.20 16 33 H 0.08 2.38 8.02 -2.39 -0.02 2.36 16 34 H -0.04 -2.10 6.81 -2.38 -0.02 -2.12 16 35 H 0.00 0.29 6.15 -2.39 -0.01 0.27 16 36 H 0.26 15.16 8.31 -92.71 -0.77 14.38 16 Total: -1.00 -65.14 276.16 -0.94 -66.08 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: 0.25 Total: 11.93 kcal Atomic # 6 Polarization: -22.67 SS G_CDS: 4.20 Total: -18.47 kcal Atomic # 7 Polarization: -99.39 SS G_CDS: -7.42 Total: -106.81 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.27 kcal Total: -65.14 -0.94 -66.08 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400635122.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.273 kcal (2) G-P(sol) polarization free energy of solvation -65.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds