Wall clock time and date at job start Mon Mar 30 2020 03:10:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.46736 * 2 1 4 4 C 1.52997 * 109.47455 * 239.99817 * 2 1 3 5 5 H 1.08995 * 109.91005 * 178.18671 * 4 2 1 6 6 C 1.53990 * 109.92059 * 299.29540 * 4 2 1 7 7 C 1.54599 * 105.14363 * 120.57449 * 6 4 2 8 8 C 1.54939 * 102.91940 * 21.95584 * 7 6 4 9 9 N 1.47907 * 109.91359 * 57.08863 * 4 2 1 10 10 N 1.46905 * 109.46960 * 119.99949 * 2 1 3 11 11 C 1.46902 * 110.99787 * 177.65608 * 10 2 1 12 12 C 1.46903 * 110.99784 * 301.60779 * 10 2 1 13 13 C 1.50701 * 109.46653 * 170.00326 * 12 10 2 14 14 H 1.08001 * 120.00236 * 359.97438 * 13 12 10 15 15 C 1.37876 * 119.99744 * 180.02562 * 13 12 10 16 16 N 1.31513 * 120.00330 * 180.02562 * 15 13 12 17 17 Si 1.86808 * 120.00036 * 359.97438 * 15 13 12 18 18 H 1.48494 * 109.47158 * 90.00224 * 17 15 13 19 19 H 1.48500 * 109.46798 * 210.00542 * 17 15 13 20 20 H 1.48506 * 109.46892 * 330.00153 * 17 15 13 21 21 H 1.09001 * 109.47106 * 64.05358 * 1 2 3 22 22 H 1.09001 * 109.46712 * 184.04736 * 1 2 3 23 23 H 1.08996 * 109.47574 * 304.04869 * 1 2 3 24 24 H 1.08998 * 110.31193 * 239.49512 * 6 4 2 25 25 H 1.09005 * 110.30631 * 1.55903 * 6 4 2 26 26 H 1.08994 * 110.72426 * 140.31900 * 7 6 4 27 27 H 1.09000 * 110.72279 * 263.60090 * 7 6 4 28 28 H 1.09006 * 110.66114 * 81.02378 * 8 7 6 29 29 H 1.08998 * 110.66662 * 204.14867 * 8 7 6 30 30 H 1.00899 * 111.00457 * 335.82988 * 9 4 2 31 31 H 1.08993 * 109.47044 * 177.32582 * 11 10 2 32 32 H 1.09003 * 109.47028 * 297.33007 * 11 10 2 33 33 H 1.09005 * 109.47153 * 57.32816 * 11 10 2 34 34 H 1.08994 * 109.47237 * 50.00128 * 12 10 2 35 35 H 1.08996 * 109.46938 * 289.99978 * 12 10 2 36 36 H 0.96995 * 120.00786 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 1 3.1295 -0.6974 -1.2727 6 6 1.5471 -2.1801 -1.2507 7 6 0.7186 -2.3251 -2.5479 8 6 1.2593 -1.1753 -3.4346 9 7 1.4957 -0.0737 -2.4624 10 7 2.0196 -0.6925 1.1995 11 6 3.4870 -0.7609 1.2057 12 6 1.5174 -0.0489 2.4208 13 6 1.8308 -0.9177 3.6116 14 1 2.3507 -1.8544 3.4748 15 6 1.4530 -0.5171 4.8756 16 7 1.7269 -1.2750 5.9150 17 14 0.5531 1.1028 5.1122 18 1 -0.9110 0.8742 5.0169 19 1 0.8812 1.6606 6.4487 20 1 0.9741 2.0612 4.0588 21 1 -0.3633 0.4496 -0.9241 22 1 -0.3633 -1.0251 0.0725 23 1 -0.3634 0.5753 0.8514 24 1 2.3943 -2.8658 -1.2643 25 1 0.9222 -2.3692 -0.3778 26 1 0.9015 -3.2921 -3.0163 27 1 -0.3435 -2.1885 -2.3445 28 1 2.1929 -1.4671 -3.9158 29 1 0.5179 -0.8811 -4.1775 30 1 0.6380 0.4164 -2.2568 31 1 3.8247 -1.2359 2.1267 32 1 3.8272 -1.3442 0.3500 33 1 3.8980 0.2469 1.1449 34 1 0.4386 0.0858 2.3432 35 1 1.9970 0.9222 2.5432 36 1 1.4614 -0.9931 6.8043 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000400704706.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:33 Heat of formation + Delta-G solvation = 10.324929 kcal Electronic energy + Delta-G solvation = -14974.545564 eV Core-core repulsion = 12686.680361 eV Total energy + Delta-G solvation = -2287.865203 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.37257 -36.32439 -32.62451 -30.95778 -29.73105 -28.59604 -27.11518 -24.45694 -22.96034 -21.22824 -20.57270 -18.52355 -17.00129 -16.13369 -15.37815 -15.05661 -14.35348 -14.18439 -13.69008 -13.54866 -12.84387 -12.54165 -12.33295 -12.01514 -11.61270 -11.60423 -11.38280 -11.01545 -10.93403 -10.82373 -10.54471 -10.45710 -10.29423 -9.91159 -9.80730 -9.25030 -8.56144 -8.51579 -7.35127 -6.05061 -4.01810 3.27476 3.35277 3.37450 4.24721 4.41834 4.82417 4.92428 4.97366 5.15615 5.25753 5.28330 5.46129 5.59032 5.69182 5.74079 5.87448 5.97623 6.01950 6.12367 6.20236 6.24869 6.34521 6.37212 6.50267 6.67045 6.72596 6.88526 6.91830 7.03861 7.44114 7.61590 7.92270 8.07457 8.66758 9.03692 9.56968 11.08109 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.051058 B = 0.007804 C = 0.007454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 548.267101 B = 3586.841038 C = 3755.666985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.073 3.927 3 H 0.035 0.965 4 C 0.079 3.921 5 H 0.082 0.918 6 C -0.137 4.137 7 C -0.159 4.159 8 C 0.042 3.958 9 N -0.675 5.675 10 N -0.521 5.521 11 C 0.033 3.967 12 C 0.158 3.842 13 C -0.507 4.507 14 H 0.081 0.919 15 C 0.068 3.932 16 N -0.901 5.901 17 Si 0.873 3.127 18 H -0.276 1.276 19 H -0.286 1.286 20 H -0.268 1.268 21 H 0.048 0.952 22 H 0.067 0.933 23 H 0.062 0.938 24 H 0.062 0.938 25 H 0.089 0.911 26 H 0.067 0.933 27 H 0.063 0.937 28 H 0.076 0.924 29 H 0.068 0.932 30 H 0.335 0.665 31 H 0.080 0.920 32 H 0.050 0.950 33 H 0.010 0.990 34 H 0.029 0.971 35 H -0.014 1.014 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.911 1.346 -15.446 15.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.036 4.036 3 H 0.053 0.947 4 C -0.031 4.031 5 H 0.100 0.900 6 C -0.176 4.176 7 C -0.198 4.198 8 C -0.088 4.088 9 N -0.305 5.305 10 N -0.246 5.246 11 C -0.115 4.115 12 C 0.032 3.968 13 C -0.545 4.545 14 H 0.099 0.901 15 C -0.133 4.133 16 N -0.540 5.540 17 Si 0.700 3.300 18 H -0.202 1.202 19 H -0.212 1.212 20 H -0.193 1.193 21 H 0.067 0.933 22 H 0.086 0.914 23 H 0.081 0.919 24 H 0.081 0.919 25 H 0.108 0.892 26 H 0.086 0.914 27 H 0.082 0.918 28 H 0.094 0.906 29 H 0.087 0.913 30 H 0.154 0.846 31 H 0.099 0.901 32 H 0.069 0.931 33 H 0.029 0.971 34 H 0.047 0.953 35 H 0.004 0.996 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.472 1.137 -15.534 15.645 hybrid contribution -0.955 1.199 0.740 1.702 sum -2.427 2.336 -14.794 15.172 Atomic orbital electron populations 1.21978 0.95234 1.02812 1.00708 1.21740 0.95257 0.95409 0.91228 0.94747 1.22378 0.99747 0.92455 0.88487 0.90037 1.22742 1.00125 0.96763 0.97956 1.23132 0.99975 0.99638 0.97055 1.23132 1.00259 0.90254 0.95168 1.63115 1.32998 1.24277 1.10134 1.61988 1.08887 1.52339 1.01380 1.22289 0.88189 0.98759 1.02258 1.20257 0.95308 0.93264 0.87983 1.21042 1.37581 1.06916 0.89008 0.90132 1.24892 0.95748 0.96741 0.95958 1.69888 1.47571 1.37695 0.98872 0.86897 0.80566 0.84864 0.77661 1.20176 1.21194 1.19287 0.93288 0.91443 0.91929 0.91908 0.89237 0.91414 0.91813 0.90590 0.91330 0.84610 0.90091 0.93131 0.97102 0.95309 0.99586 0.92693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.35 8.33 37.16 0.31 -2.04 16 2 C 0.07 1.26 1.98 -67.71 -0.13 1.12 16 3 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 4 C 0.08 1.18 2.73 -66.64 -0.18 0.99 16 5 H 0.08 1.28 6.56 -51.93 -0.34 0.94 16 6 C -0.14 -1.94 5.81 -25.37 -0.15 -2.09 16 7 C -0.16 -1.82 7.07 -24.87 -0.18 -2.00 16 8 C 0.04 0.46 7.55 -1.74 -0.01 0.45 16 9 N -0.68 -8.89 7.41 -102.92 -0.76 -9.65 16 10 N -0.52 -10.74 3.97 -236.33 -0.94 -11.67 16 11 C 0.03 0.65 8.92 60.07 0.54 1.18 16 12 C 0.16 3.82 3.58 -4.97 -0.02 3.80 16 13 C -0.51 -14.36 8.97 -34.44 -0.31 -14.67 16 14 H 0.08 2.48 7.39 -52.49 -0.39 2.09 16 15 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 16 N -0.90 -27.62 13.96 55.43 0.77 -26.85 16 17 Si 0.87 21.56 27.47 -169.99 -4.67 16.89 16 18 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 19 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 20 H -0.27 -6.43 6.54 56.52 0.37 -6.06 16 21 H 0.05 0.63 6.00 -51.93 -0.31 0.32 16 22 H 0.07 1.08 6.61 -51.93 -0.34 0.74 16 23 H 0.06 1.06 6.39 -51.93 -0.33 0.73 16 24 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 25 H 0.09 1.46 6.05 -51.93 -0.31 1.15 16 26 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.34 4.19 6.09 -39.29 -0.24 3.95 16 31 H 0.08 1.74 6.70 -51.93 -0.35 1.39 16 32 H 0.05 0.85 6.46 -51.93 -0.34 0.51 16 33 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 34 H 0.03 0.69 5.29 -51.93 -0.27 0.42 16 35 H -0.01 -0.34 7.18 -51.93 -0.37 -0.71 16 36 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 269.97 15.07 4.07 4.07 Total: -1.00 -29.68 269.97 -7.48 -37.16 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -5.72 Total: 1.43 kcal Atomic # 6 Polarization: -11.14 SS G_CDS: -0.23 Total: -11.37 kcal Atomic # 7 Polarization: -47.25 SS G_CDS: -0.93 Total: -48.17 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.67 Total: 16.89 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -29.68 -7.48 -37.16 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400704706.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.486 kcal (2) G-P(sol) polarization free energy of solvation -29.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.161 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds