Wall clock time and date at job start Mon Mar 30 2020 03:10:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08993 * 109.47147 * 2 1 4 4 C 1.53008 * 109.46943 * 120.00059 * 2 1 3 5 5 H 1.09001 * 110.33012 * 52.03457 * 4 2 1 6 6 C 1.54911 * 110.46532 * 289.71737 * 4 2 1 7 7 C 1.55136 * 101.64996 * 204.05201 * 6 4 2 8 8 C 1.54313 * 103.02003 * 35.65659 * 7 6 4 9 9 N 1.47446 * 107.23463 * 337.71200 * 8 7 6 10 10 N 1.46898 * 109.46804 * 239.99594 * 2 1 3 11 11 C 1.46899 * 110.99829 * 72.00683 * 10 2 1 12 12 C 1.46896 * 111.00455 * 308.04745 * 10 2 1 13 13 C 1.50697 * 109.47400 * 190.00195 * 12 10 2 14 14 H 1.08001 * 119.99573 * 359.97438 * 13 12 10 15 15 C 1.37875 * 120.00121 * 180.02562 * 13 12 10 16 16 N 1.31517 * 120.00116 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 120.00125 * 179.97438 * 15 13 12 18 18 H 1.48507 * 109.46873 * 59.99898 * 17 15 13 19 19 H 1.48497 * 109.47364 * 179.97438 * 17 15 13 20 20 H 1.48506 * 109.47150 * 300.00171 * 17 15 13 21 21 H 1.08993 * 109.47147 * 180.02562 * 1 2 3 22 22 H 1.09004 * 109.46792 * 300.00112 * 1 2 3 23 23 H 1.08998 * 109.46731 * 59.99369 * 1 2 3 24 24 H 1.09001 * 110.99227 * 322.14820 * 6 4 2 25 25 H 1.09004 * 110.98668 * 85.92613 * 6 4 2 26 26 H 1.08998 * 110.70912 * 277.27001 * 7 6 4 27 27 H 1.09000 * 110.70391 * 154.03757 * 7 6 4 28 28 H 1.09008 * 109.89125 * 218.31154 * 8 7 6 29 29 H 1.08997 * 109.89137 * 97.12236 * 8 7 6 30 30 H 1.00893 * 111.00109 * 236.74397 * 9 8 7 31 31 H 1.08996 * 109.47300 * 63.84344 * 11 10 2 32 32 H 1.09000 * 109.47278 * 183.84868 * 11 10 2 33 33 H 1.09006 * 109.46814 * 303.84362 * 11 10 2 34 34 H 1.08999 * 109.46950 * 310.00689 * 12 10 2 35 35 H 1.09002 * 109.46816 * 69.99924 * 12 10 2 36 36 H 0.97000 * 119.99981 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.5734 -1.7025 1.3371 6 6 1.7589 0.1249 2.5160 7 6 2.8392 -0.4068 3.4942 8 6 4.0421 -0.6818 2.5675 9 7 3.5118 -0.8535 1.2025 10 7 2.0196 -0.6926 -1.1994 11 6 1.7957 0.1182 -2.4037 12 6 1.3983 -2.0169 -1.3332 13 6 2.0957 -2.7914 -2.4216 14 1 2.9181 -2.3444 -2.9603 15 6 1.6833 -4.0703 -2.7303 16 7 0.6809 -4.6142 -2.0752 17 14 2.5474 -5.0302 -4.0799 18 1 3.9824 -5.1899 -3.7326 19 1 1.9193 -6.3690 -4.2151 20 1 2.4279 -4.2948 -5.3646 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 1.9020 1.1868 2.3159 25 1 0.7564 -0.0665 2.8989 26 1 2.5050 -1.3262 3.9749 27 1 3.0909 0.3488 4.2383 28 1 4.5536 -1.5911 2.8836 29 1 4.7313 0.1622 2.5941 30 1 3.7826 -1.7466 0.8191 31 1 2.3791 1.0364 -2.3373 32 1 2.1044 -0.4457 -3.2840 33 1 0.7370 0.3654 -2.4836 34 1 1.4859 -2.5563 -0.3901 35 1 0.3450 -1.8999 -1.5883 36 1 0.3905 -5.5138 -2.2927 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000400704709.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:35 Heat of formation + Delta-G solvation = 1.226582 kcal Electronic energy + Delta-G solvation = -14974.617567 eV Core-core repulsion = 12686.357830 eV Total energy + Delta-G solvation = -2288.259737 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.76658 -36.30288 -32.64340 -30.67029 -29.73408 -27.45820 -26.95166 -24.73092 -22.75460 -20.82439 -20.60698 -18.42625 -16.57610 -16.22180 -15.16675 -14.54512 -14.32878 -13.71183 -13.39712 -13.14844 -12.64862 -12.59465 -11.97750 -11.72830 -11.54234 -11.39164 -11.10814 -10.94166 -10.81317 -10.79632 -10.59395 -10.35847 -10.24479 -10.14116 -9.61185 -9.10976 -8.37851 -7.81210 -6.97694 -5.97963 -3.98179 3.36123 3.39838 3.43360 4.45909 4.60362 4.87866 4.97924 5.24399 5.31638 5.38069 5.56595 5.73493 5.81090 5.88659 5.91865 5.97551 6.08378 6.14713 6.17069 6.30120 6.32865 6.43367 6.52142 6.61916 6.80984 6.88115 7.36628 7.46960 7.50778 7.89113 7.98701 8.20335 8.35299 8.69788 9.10741 9.65741 11.12637 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.034514 B = 0.008652 C = 0.007960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.076599 B = 3235.336869 C = 3516.604023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.099 3.901 3 H 0.068 0.932 4 C 0.091 3.909 5 H 0.053 0.947 6 C -0.124 4.124 7 C -0.143 4.143 8 C 0.046 3.954 9 N -0.663 5.663 10 N -0.524 5.524 11 C 0.037 3.963 12 C 0.192 3.808 13 C -0.504 4.504 14 H 0.062 0.938 15 C 0.054 3.946 16 N -0.901 5.901 17 Si 0.896 3.104 18 H -0.277 1.277 19 H -0.289 1.289 20 H -0.278 1.278 21 H 0.064 0.936 22 H 0.047 0.953 23 H 0.052 0.948 24 H 0.071 0.929 25 H 0.067 0.933 26 H 0.063 0.937 27 H 0.067 0.933 28 H 0.043 0.957 29 H 0.066 0.934 30 H 0.350 0.650 31 H 0.043 0.957 32 H 0.072 0.928 33 H 0.008 0.992 34 H 0.026 0.974 35 H -0.009 1.009 36 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.762 8.144 8.103 11.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.011 4.011 3 H 0.086 0.914 4 C -0.019 4.019 5 H 0.071 0.929 6 C -0.163 4.163 7 C -0.182 4.182 8 C -0.084 4.084 9 N -0.293 5.293 10 N -0.247 5.247 11 C -0.112 4.112 12 C 0.066 3.934 13 C -0.542 4.542 14 H 0.080 0.920 15 C -0.147 4.147 16 N -0.541 5.541 17 Si 0.724 3.276 18 H -0.202 1.202 19 H -0.215 1.215 20 H -0.204 1.204 21 H 0.083 0.917 22 H 0.066 0.934 23 H 0.071 0.929 24 H 0.090 0.910 25 H 0.086 0.914 26 H 0.081 0.919 27 H 0.086 0.914 28 H 0.062 0.938 29 H 0.085 0.915 30 H 0.167 0.833 31 H 0.062 0.938 32 H 0.091 0.909 33 H 0.027 0.973 34 H 0.044 0.956 35 H 0.009 0.991 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.317 8.555 7.935 11.896 hybrid contribution -0.814 -1.421 -0.385 1.682 sum 1.503 7.133 7.551 10.496 Atomic orbital electron populations 1.22489 0.98684 1.02633 1.00763 1.21558 0.90978 0.97349 0.91252 0.91392 1.22338 0.88489 0.97594 0.93448 0.92940 1.22739 0.98254 1.00155 0.95106 1.22785 0.96478 1.00821 0.98080 1.22593 0.96599 1.00328 0.88867 1.61542 1.09238 1.40148 1.18400 1.62224 1.58125 1.04056 1.00267 1.22206 0.97242 0.96742 0.94993 1.19726 0.92534 0.84046 0.97059 1.21196 1.16342 0.98744 1.17961 0.91963 1.24982 0.95249 0.97686 0.96776 1.69952 1.27135 1.15436 1.41577 0.86597 0.79802 0.78895 0.82308 1.20221 1.21500 1.20359 0.91690 0.93379 0.92921 0.91018 0.91384 0.91857 0.91418 0.93823 0.91535 0.83261 0.93825 0.90899 0.97324 0.95582 0.99103 0.93043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.25 8.31 37.16 0.31 -2.94 16 2 C 0.10 1.82 2.10 -67.71 -0.14 1.68 16 3 H 0.07 1.22 7.93 -51.93 -0.41 0.81 16 4 C 0.09 1.58 2.43 -66.18 -0.16 1.42 16 5 H 0.05 1.03 6.84 -51.93 -0.36 0.67 16 6 C -0.12 -1.71 5.83 -24.59 -0.14 -1.85 16 7 C -0.14 -1.78 6.94 -24.91 -0.17 -1.95 16 8 C 0.05 0.64 7.58 -2.84 -0.02 0.61 16 9 N -0.66 -11.47 6.79 -103.84 -0.70 -12.17 16 10 N -0.52 -11.44 4.43 -236.33 -1.05 -12.48 16 11 C 0.04 0.75 9.30 60.06 0.56 1.31 16 12 C 0.19 4.94 3.60 -4.98 -0.02 4.92 16 13 C -0.50 -14.17 8.40 -34.44 -0.29 -14.46 16 14 H 0.06 1.75 7.16 -52.49 -0.38 1.37 16 15 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 16 N -0.90 -26.79 13.29 55.43 0.74 -26.05 16 17 Si 0.90 21.83 29.54 -169.99 -5.02 16.81 16 18 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 19 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 21 H 0.06 1.28 6.54 -51.93 -0.34 0.94 16 22 H 0.05 0.70 7.58 -51.93 -0.39 0.31 16 23 H 0.05 0.91 6.70 -51.93 -0.35 0.56 16 24 H 0.07 0.95 7.97 -51.93 -0.41 0.54 16 25 H 0.07 0.87 8.09 -51.93 -0.42 0.45 16 26 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.04 0.57 8.14 -51.92 -0.42 0.14 16 29 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.35 6.59 8.91 -39.30 -0.35 6.24 16 31 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.07 1.58 6.68 -51.93 -0.35 1.24 16 33 H 0.01 0.17 6.57 -51.93 -0.34 -0.18 16 34 H 0.03 0.72 6.36 -51.93 -0.33 0.39 16 35 H -0.01 -0.24 6.83 -51.93 -0.35 -0.60 16 36 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 278.49 15.07 4.20 4.20 Total: -1.00 -29.23 278.49 -8.05 -37.28 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: -6.03 Total: 2.25 kcal Atomic # 6 Polarization: -9.65 SS G_CDS: -0.18 Total: -9.83 kcal Atomic # 7 Polarization: -49.69 SS G_CDS: -1.02 Total: -50.71 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -29.23 -8.05 -37.28 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400704709.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.506 kcal (2) G-P(sol) polarization free energy of solvation -29.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.279 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds