Wall clock time and date at job start Mon Mar 30 2020 03:10:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09010 * 109.46929 * 2 1 4 4 C 1.53000 * 109.46981 * 240.00025 * 2 1 3 5 5 H 1.08988 * 109.88182 * 304.34507 * 4 2 1 6 6 C 1.54320 * 109.88836 * 183.14111 * 4 2 1 7 7 C 1.55140 * 103.02153 * 218.31183 * 6 4 2 8 8 C 1.54911 * 101.65016 * 35.65441 * 7 6 4 9 9 N 1.47449 * 109.88548 * 65.37790 * 4 2 1 10 10 N 1.46899 * 109.47217 * 119.99790 * 2 1 3 11 11 C 1.46895 * 111.00468 * 287.62751 * 10 2 1 12 12 C 1.46911 * 110.99700 * 51.58032 * 10 2 1 13 13 C 1.50695 * 109.46864 * 169.99753 * 12 10 2 14 14 H 1.08002 * 120.00194 * 0.02562 * 13 12 10 15 15 C 1.37874 * 119.99742 * 179.97438 * 13 12 10 16 16 N 1.31520 * 120.00239 * 0.27397 * 15 13 12 17 17 Si 1.86797 * 120.00057 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47090 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47443 * 119.99820 * 17 15 13 20 20 H 1.48508 * 109.47283 * 239.99954 * 17 15 13 21 21 H 1.08999 * 109.47131 * 59.99831 * 1 2 3 22 22 H 1.08993 * 109.47063 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.46837 * 300.00424 * 1 2 3 24 24 H 1.09000 * 110.70546 * 336.69544 * 6 4 2 25 25 H 1.08997 * 110.70170 * 99.92550 * 6 4 2 26 26 H 1.09000 * 110.98889 * 277.56575 * 7 6 4 27 27 H 1.08998 * 111.02176 * 153.76046 * 7 6 4 28 28 H 1.08997 * 110.37061 * 204.09979 * 8 7 6 29 29 H 1.09000 * 110.36955 * 81.76368 * 8 7 6 30 30 H 1.00894 * 110.99997 * 356.14379 * 9 4 2 31 31 H 1.08996 * 109.47472 * 189.24631 * 11 10 2 32 32 H 1.09008 * 109.46989 * 309.24758 * 11 10 2 33 33 H 1.09005 * 109.47205 * 69.24388 * 11 10 2 34 34 H 1.08994 * 109.46715 * 49.99761 * 12 10 2 35 35 H 1.09003 * 109.46841 * 290.00021 * 12 10 2 36 36 H 0.96997 * 119.99488 * 359.72631 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0278 0.0000 4 6 2.0400 -0.7212 -1.2493 5 1 1.6184 -1.7252 -1.2957 6 6 3.5811 -0.7961 -1.2199 7 6 3.9705 -0.5680 -2.7042 8 6 2.8966 0.4530 -3.1560 9 7 1.6625 0.0377 -2.4558 10 7 2.0197 -0.6924 1.1994 11 6 1.8037 0.1220 2.4027 12 6 1.3916 -2.0133 1.3381 13 6 2.0884 -2.7890 2.4260 14 1 2.9148 -2.3452 2.9613 15 6 1.6701 -4.0650 2.7388 16 7 0.6666 -4.6072 2.0840 17 14 2.5333 -5.0265 4.0878 18 1 3.6264 -4.2013 4.6619 19 1 1.5578 -5.3678 5.1542 20 1 3.1024 -6.2749 3.5195 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8900 24 1 3.9932 -0.0093 -0.5880 25 1 3.9128 -1.7775 -0.8808 26 1 3.8938 -1.4936 -3.2747 27 1 4.9712 -0.1436 -2.7851 28 1 2.7555 0.4026 -4.2356 29 1 3.1819 1.4614 -2.8563 30 1 1.0955 0.8374 -2.2172 31 1 2.3181 -0.3350 3.2480 32 1 2.1965 1.1254 2.2376 33 1 0.7362 0.1803 2.6152 34 1 1.4736 -2.5551 0.3959 35 1 0.3398 -1.8901 1.5961 36 1 0.2182 -4.1078 1.3837 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000400704716.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:41 Heat of formation + Delta-G solvation = -3.258674 kcal Electronic energy + Delta-G solvation = -15036.361277 eV Core-core repulsion = 12747.907045 eV Total energy + Delta-G solvation = -2288.454232 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.11880 -36.45092 -32.90264 -30.85126 -29.62386 -27.61754 -26.85214 -24.66971 -22.82805 -20.97320 -20.68584 -19.06523 -16.76252 -16.18068 -15.65574 -14.50226 -13.99545 -13.85396 -13.62667 -13.01180 -12.94773 -12.81143 -12.18808 -11.87803 -11.65631 -11.47435 -11.15385 -11.00071 -10.91799 -10.85168 -10.53253 -10.43154 -10.23755 -10.10863 -9.96288 -8.66689 -8.35603 -8.16491 -7.28025 -6.33995 -4.02325 3.45352 3.49330 3.62964 4.35747 4.55455 4.90734 5.03228 5.09056 5.15016 5.36408 5.42002 5.56950 5.62971 5.76575 5.88538 5.94340 6.03278 6.06639 6.11956 6.18724 6.29944 6.40731 6.51373 6.57304 6.65868 6.78892 7.01667 7.13550 7.19305 7.55084 7.82554 8.01290 8.36456 8.62053 8.90734 9.68127 11.05297 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.036865 B = 0.008480 C = 0.007909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.353840 B = 3301.172873 C = 3539.574896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.066 3.934 3 H 0.062 0.938 4 C 0.087 3.913 5 H 0.086 0.914 6 C -0.116 4.116 7 C -0.135 4.135 8 C 0.045 3.955 9 N -0.680 5.680 10 N -0.524 5.524 11 C 0.040 3.960 12 C 0.181 3.819 13 C -0.588 4.588 14 H 0.056 0.944 15 C 0.013 3.987 16 N -0.916 5.916 17 Si 1.076 2.924 18 H -0.289 1.289 19 H -0.289 1.289 20 H -0.287 1.287 21 H 0.052 0.948 22 H 0.065 0.935 23 H 0.050 0.950 24 H 0.068 0.932 25 H 0.078 0.922 26 H 0.070 0.930 27 H 0.067 0.933 28 H 0.072 0.928 29 H 0.036 0.964 30 H 0.333 0.667 31 H 0.072 0.928 32 H 0.042 0.958 33 H 0.014 0.986 34 H 0.023 0.977 35 H -0.016 1.016 36 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.415 10.177 -6.443 12.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.045 4.045 3 H 0.080 0.920 4 C -0.023 4.023 5 H 0.104 0.896 6 C -0.155 4.155 7 C -0.173 4.173 8 C -0.084 4.084 9 N -0.310 5.310 10 N -0.247 5.247 11 C -0.108 4.108 12 C 0.056 3.944 13 C -0.626 4.626 14 H 0.074 0.926 15 C -0.190 4.190 16 N -0.552 5.552 17 Si 0.905 3.095 18 H -0.215 1.215 19 H -0.215 1.215 20 H -0.214 1.214 21 H 0.071 0.929 22 H 0.084 0.916 23 H 0.069 0.931 24 H 0.087 0.913 25 H 0.096 0.904 26 H 0.089 0.911 27 H 0.086 0.914 28 H 0.090 0.910 29 H 0.055 0.945 30 H 0.150 0.850 31 H 0.091 0.909 32 H 0.060 0.940 33 H 0.032 0.968 34 H 0.041 0.959 35 H 0.001 0.999 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.804 8.087 -6.099 10.820 hybrid contribution -0.685 2.345 -0.092 2.445 sum 3.119 10.432 -6.192 12.526 Atomic orbital electron populations 1.22447 0.97997 1.02860 1.00799 1.22181 0.92651 0.96935 0.92717 0.91959 1.22277 0.95070 0.98146 0.86781 0.89601 1.22585 0.94969 1.03344 0.94604 1.22763 0.97848 0.99281 0.97377 1.22806 0.89958 0.96715 0.98930 1.62180 1.17782 1.26975 1.24097 1.62231 1.57910 1.04156 1.00429 1.22179 0.98482 0.95712 0.94454 1.19890 0.92293 0.84883 0.97334 1.22046 1.18720 1.01779 1.20080 0.92567 1.25817 0.96532 0.95709 1.00983 1.70735 1.21273 1.40259 1.22982 0.83445 0.75320 0.75479 0.75287 1.21519 1.21510 1.21372 0.92877 0.91611 0.93139 0.91304 0.90367 0.91093 0.91424 0.90966 0.94532 0.85003 0.90898 0.93966 0.96758 0.95918 0.99867 0.92271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.12 8.28 37.16 0.31 -2.81 16 2 C 0.07 1.16 1.60 -67.71 -0.11 1.06 16 3 H 0.06 1.02 7.89 -51.92 -0.41 0.61 16 4 C 0.09 1.50 2.78 -66.72 -0.19 1.31 16 5 H 0.09 1.76 6.66 -51.94 -0.35 1.41 16 6 C -0.12 -1.92 6.01 -24.91 -0.15 -2.07 16 7 C -0.13 -1.81 7.08 -24.59 -0.17 -1.98 16 8 C 0.05 0.57 7.57 -2.30 -0.02 0.56 16 9 N -0.68 -10.06 7.25 -103.82 -0.75 -10.81 16 10 N -0.52 -11.13 4.20 -236.32 -0.99 -12.13 16 11 C 0.04 0.79 8.97 60.06 0.54 1.33 16 12 C 0.18 4.63 2.90 -4.97 -0.01 4.61 16 13 C -0.59 -16.63 8.58 -34.44 -0.30 -16.93 16 14 H 0.06 1.60 7.10 -52.49 -0.37 1.23 16 15 C 0.01 0.38 5.46 -17.82 -0.10 0.28 16 16 N -0.92 -28.02 13.65 55.43 0.76 -27.27 16 17 Si 1.08 25.61 29.90 -169.99 -5.08 20.53 16 18 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 19 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 20 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 21 H 0.05 0.77 6.94 -51.93 -0.36 0.41 16 22 H 0.06 1.29 6.54 -51.93 -0.34 0.95 16 23 H 0.05 0.85 6.99 -51.93 -0.36 0.49 16 24 H 0.07 1.14 7.85 -51.93 -0.41 0.74 16 25 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 26 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 28 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 29 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.33 4.48 7.01 -39.29 -0.28 4.21 16 31 H 0.07 1.53 7.01 -51.93 -0.36 1.17 16 32 H 0.04 0.70 7.92 -51.92 -0.41 0.29 16 33 H 0.01 0.28 7.05 -51.93 -0.37 -0.09 16 34 H 0.02 0.62 6.16 -51.93 -0.32 0.30 16 35 H -0.02 -0.44 6.65 -51.93 -0.35 -0.79 16 36 H 0.27 8.17 7.22 -40.82 -0.29 7.87 16 LS Contribution 275.26 15.07 4.15 4.15 Total: -1.00 -29.83 275.26 -8.00 -37.83 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: -5.88 Total: 2.34 kcal Atomic # 6 Polarization: -14.45 SS G_CDS: -0.20 Total: -14.64 kcal Atomic # 7 Polarization: -49.22 SS G_CDS: -0.99 Total: -50.21 kcal Atomic # 14 Polarization: 25.61 SS G_CDS: -5.08 Total: 20.53 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -29.83 -8.00 -37.83 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400704716.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.572 kcal (2) G-P(sol) polarization free energy of solvation -29.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds