Wall clock time and date at job start Mon Mar 30 2020 03:10:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09010 * 109.46929 * 2 1 4 4 C 1.53000 * 109.46981 * 240.00025 * 2 1 3 5 5 H 1.08988 * 109.88182 * 304.34507 * 4 2 1 6 6 C 1.54320 * 109.88836 * 183.14111 * 4 2 1 7 7 C 1.55140 * 103.02153 * 218.31183 * 6 4 2 8 8 C 1.54911 * 101.65016 * 35.65441 * 7 6 4 9 9 N 1.47449 * 109.88548 * 65.37790 * 4 2 1 10 10 N 1.46899 * 109.47217 * 119.99790 * 2 1 3 11 11 C 1.46895 * 111.00468 * 287.62751 * 10 2 1 12 12 C 1.46911 * 110.99700 * 51.58032 * 10 2 1 13 13 C 1.50695 * 109.46864 * 169.99753 * 12 10 2 14 14 H 1.08002 * 120.00194 * 0.02562 * 13 12 10 15 15 C 1.37874 * 119.99742 * 179.97438 * 13 12 10 16 16 N 1.31520 * 120.00239 * 0.27397 * 15 13 12 17 17 Si 1.86797 * 120.00057 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47090 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47443 * 119.99820 * 17 15 13 20 20 H 1.48508 * 109.47283 * 239.99954 * 17 15 13 21 21 H 1.08999 * 109.47131 * 59.99831 * 1 2 3 22 22 H 1.08993 * 109.47063 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.46837 * 300.00424 * 1 2 3 24 24 H 1.09000 * 110.70546 * 336.69544 * 6 4 2 25 25 H 1.08997 * 110.70170 * 99.92550 * 6 4 2 26 26 H 1.09000 * 110.98889 * 277.56575 * 7 6 4 27 27 H 1.08998 * 111.02176 * 153.76046 * 7 6 4 28 28 H 1.08997 * 110.37061 * 204.09979 * 8 7 6 29 29 H 1.09000 * 110.36955 * 81.76368 * 8 7 6 30 30 H 1.00894 * 110.99997 * 356.14379 * 9 4 2 31 31 H 1.08996 * 109.47472 * 189.24631 * 11 10 2 32 32 H 1.09008 * 109.46989 * 309.24758 * 11 10 2 33 33 H 1.09005 * 109.47205 * 69.24388 * 11 10 2 34 34 H 1.08994 * 109.46715 * 49.99761 * 12 10 2 35 35 H 1.09003 * 109.46841 * 290.00021 * 12 10 2 36 36 H 0.96997 * 119.99488 * 359.72631 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0278 0.0000 4 6 2.0400 -0.7212 -1.2493 5 1 1.6184 -1.7252 -1.2957 6 6 3.5811 -0.7961 -1.2199 7 6 3.9705 -0.5680 -2.7042 8 6 2.8966 0.4530 -3.1560 9 7 1.6625 0.0377 -2.4558 10 7 2.0197 -0.6924 1.1994 11 6 1.8037 0.1220 2.4027 12 6 1.3916 -2.0133 1.3381 13 6 2.0884 -2.7890 2.4260 14 1 2.9148 -2.3452 2.9613 15 6 1.6701 -4.0650 2.7388 16 7 0.6666 -4.6072 2.0840 17 14 2.5333 -5.0265 4.0878 18 1 3.6264 -4.2013 4.6619 19 1 1.5578 -5.3678 5.1542 20 1 3.1024 -6.2749 3.5195 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8900 24 1 3.9932 -0.0093 -0.5880 25 1 3.9128 -1.7775 -0.8808 26 1 3.8938 -1.4936 -3.2747 27 1 4.9712 -0.1436 -2.7851 28 1 2.7555 0.4026 -4.2356 29 1 3.1819 1.4614 -2.8563 30 1 1.0955 0.8374 -2.2172 31 1 2.3181 -0.3350 3.2480 32 1 2.1965 1.1254 2.2376 33 1 0.7362 0.1803 2.6152 34 1 1.4736 -2.5551 0.3959 35 1 0.3398 -1.8901 1.5961 36 1 0.2182 -4.1078 1.3837 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000400704716.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:40 Heat of formation + Delta-G solvation = -24.926572 kcal Electronic energy + Delta-G solvation = -15037.300868 eV Core-core repulsion = 12747.907045 eV Total energy + Delta-G solvation = -2289.393823 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.52993 -37.97472 -35.02714 -32.32210 -30.90265 -29.13232 -28.63875 -26.42020 -24.71479 -22.43383 -21.83840 -20.64908 -18.83967 -17.53358 -17.09579 -16.00627 -15.79642 -15.47329 -15.40376 -14.49577 -14.39428 -14.09813 -13.92416 -13.32954 -13.23934 -12.95487 -12.84701 -12.81603 -12.47297 -12.33465 -12.03295 -11.93658 -11.83613 -11.63318 -11.45902 -10.76573 -10.56338 -9.39907 -9.04855 -8.66658 -6.36504 1.51778 1.61418 1.78088 2.55135 3.02675 3.16036 3.51183 3.69461 3.81259 3.89230 4.16403 4.20585 4.34199 4.44570 4.49796 4.59794 4.66619 4.71104 4.80968 4.90895 4.93268 4.97191 5.04598 5.08379 5.14352 5.22375 5.25379 5.41646 5.79774 5.92096 6.03430 6.38298 6.44055 6.48442 6.67719 7.43762 8.71906 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.036865 B = 0.008480 C = 0.007909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.353840 B = 3301.172873 C = 3539.574896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.067 3.933 3 H 0.091 0.909 4 C 0.093 3.907 5 H 0.042 0.958 6 C -0.117 4.117 7 C -0.128 4.128 8 C 0.047 3.953 9 N -0.684 5.684 10 N -0.531 5.531 11 C 0.042 3.958 12 C 0.201 3.799 13 C -0.598 4.598 14 H 0.053 0.947 15 C -0.040 4.040 16 N -0.939 5.939 17 Si 1.124 2.876 18 H -0.270 1.270 19 H -0.279 1.279 20 H -0.280 1.280 21 H 0.082 0.918 22 H 0.029 0.971 23 H 0.052 0.948 24 H 0.072 0.928 25 H 0.046 0.954 26 H 0.063 0.937 27 H 0.092 0.908 28 H 0.089 0.911 29 H 0.058 0.942 30 H 0.344 0.656 31 H 0.054 0.946 32 H 0.080 0.920 33 H 0.009 0.991 34 H -0.001 1.001 35 H -0.041 1.041 36 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.545 12.025 -6.738 14.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.042 4.042 3 H 0.109 0.891 4 C -0.017 4.017 5 H 0.060 0.940 6 C -0.156 4.156 7 C -0.166 4.166 8 C -0.082 4.082 9 N -0.316 5.316 10 N -0.255 5.255 11 C -0.106 4.106 12 C 0.075 3.925 13 C -0.636 4.636 14 H 0.071 0.929 15 C -0.237 4.237 16 N -0.577 5.577 17 Si 0.945 3.055 18 H -0.195 1.195 19 H -0.205 1.205 20 H -0.206 1.206 21 H 0.101 0.899 22 H 0.049 0.951 23 H 0.071 0.929 24 H 0.090 0.910 25 H 0.064 0.936 26 H 0.082 0.918 27 H 0.110 0.890 28 H 0.107 0.893 29 H 0.076 0.924 30 H 0.162 0.838 31 H 0.073 0.927 32 H 0.099 0.901 33 H 0.028 0.972 34 H 0.016 0.984 35 H -0.023 1.023 36 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 4.933 9.975 -6.414 12.844 hybrid contribution -1.042 1.842 -0.064 2.117 sum 3.892 11.816 -6.479 14.027 Atomic orbital electron populations 1.22354 0.97549 1.01009 1.02364 1.22287 0.93023 0.97762 0.91171 0.89099 1.22009 0.95407 0.96498 0.87833 0.94025 1.22515 0.94376 1.01611 0.97048 1.22756 0.99587 0.99617 0.94636 1.22909 0.88375 0.97290 0.99578 1.62084 1.19207 1.27665 1.22648 1.62119 1.57777 1.03119 1.02469 1.22191 0.98227 0.97052 0.93160 1.19472 0.90821 0.87050 0.95178 1.22390 1.18497 1.02251 1.20467 0.92878 1.27374 0.96401 0.97258 1.02624 1.70871 1.22704 1.40463 1.23703 0.82845 0.75029 0.74679 0.72903 1.19487 1.20473 1.20568 0.89913 0.95143 0.92886 0.90957 0.93553 0.91774 0.88955 0.89284 0.92389 0.83832 0.92687 0.90129 0.97196 0.98353 1.02314 0.93842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.88 8.28 71.98 0.60 -5.28 16 2 C 0.07 2.32 1.60 44.92 0.07 2.40 16 3 H 0.09 2.68 7.89 -2.38 -0.02 2.66 16 4 C 0.09 3.20 2.78 45.26 0.13 3.32 16 5 H 0.04 1.81 6.66 -2.39 -0.02 1.79 16 6 C -0.12 -3.80 6.01 31.78 0.19 -3.60 16 7 C -0.13 -3.17 7.08 31.98 0.23 -2.94 16 8 C 0.05 1.04 7.57 86.78 0.66 1.70 16 9 N -0.68 -18.91 7.25 -482.37 -3.50 -22.41 16 10 N -0.53 -22.65 4.20 -901.58 -3.79 -26.44 16 11 C 0.04 1.61 8.97 127.69 1.15 2.75 16 12 C 0.20 10.70 2.90 85.55 0.25 10.95 16 13 C -0.60 -34.65 8.58 25.60 0.22 -34.43 16 14 H 0.05 3.06 7.10 -2.91 -0.02 3.04 16 15 C -0.04 -2.33 5.46 84.65 0.46 -1.86 16 16 N -0.94 -59.27 13.65 21.45 0.29 -58.97 16 17 Si 1.12 51.52 29.90 68.60 2.05 53.57 16 18 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 19 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 20 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 21 H 0.08 2.26 6.94 -2.39 -0.02 2.25 16 22 H 0.03 1.22 6.54 -2.39 -0.02 1.21 16 23 H 0.05 1.74 6.99 -2.39 -0.02 1.72 16 24 H 0.07 2.28 7.85 -2.39 -0.02 2.26 16 25 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 26 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 27 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 28 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 29 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.34 8.22 7.01 -89.70 -0.63 7.59 16 31 H 0.05 2.28 7.01 -2.39 -0.02 2.26 16 32 H 0.08 2.46 7.92 -2.38 -0.02 2.44 16 33 H 0.01 0.37 7.05 -2.38 -0.02 0.36 16 34 H 0.00 -0.08 6.16 -2.39 -0.01 -0.10 16 35 H -0.04 -2.33 6.65 -2.39 -0.02 -2.34 16 36 H 0.25 16.24 7.22 -92.71 -0.67 15.57 16 Total: -1.00 -66.15 275.26 -0.48 -66.62 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: 0.52 Total: 14.63 kcal Atomic # 6 Polarization: -30.95 SS G_CDS: 3.94 Total: -27.00 kcal Atomic # 7 Polarization: -100.83 SS G_CDS: -6.99 Total: -107.82 kcal Atomic # 14 Polarization: 51.52 SS G_CDS: 2.05 Total: 53.57 kcal Total: -66.15 -0.48 -66.62 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400704716.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.697 kcal (2) G-P(sol) polarization free energy of solvation -66.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds