Wall clock time and date at job start Mon Mar 30 2020 02:55:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.48802 * 2 1 4 4 C 1.53044 * 109.50670 * 120.05212 * 2 1 3 5 5 N 1.47000 * 109.37868 * 61.57901 * 4 2 1 6 6 C 1.46956 * 110.85716 * 59.30199 * 5 4 2 7 7 H 1.09002 * 109.48806 * 60.67448 * 6 5 4 8 8 C 1.52997 * 109.49177 * 180.71716 * 6 5 4 9 9 C 1.53056 * 109.38342 * 300.69720 * 6 5 4 10 10 H 1.09001 * 109.48542 * 298.44391 * 9 6 5 11 11 C 1.52996 * 109.49039 * 178.40245 * 9 6 5 12 12 N 1.46951 * 109.48819 * 239.95604 * 2 1 3 13 13 C 1.46899 * 111.00409 * 63.19857 * 12 2 1 14 14 C 1.50703 * 109.46969 * 66.20177 * 13 12 2 15 15 H 1.08003 * 120.00096 * 359.97438 * 14 13 12 16 16 C 1.37875 * 120.00055 * 180.02562 * 14 13 12 17 17 N 1.31522 * 119.99963 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 120.00232 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.46629 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.47181 * 119.99706 * 18 16 14 21 21 H 1.48499 * 109.47361 * 240.00374 * 18 16 14 22 22 H 1.08994 * 109.47287 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.47191 * 300.04450 * 1 2 3 24 24 H 1.09003 * 109.47011 * 60.04509 * 1 2 3 25 25 H 1.09002 * 109.49164 * 181.54542 * 4 2 1 26 26 H 1.09001 * 109.49305 * 301.58910 * 4 2 1 27 27 H 1.00900 * 110.99038 * 295.45994 * 5 4 2 28 28 H 1.08995 * 109.47504 * 179.97438 * 8 6 5 29 29 H 1.08998 * 109.47109 * 299.96081 * 8 6 5 30 30 H 1.09002 * 109.47158 * 59.95673 * 8 6 5 31 31 H 1.09004 * 109.47630 * 59.99301 * 11 9 6 32 32 H 1.08996 * 109.47289 * 179.97438 * 11 9 6 33 33 H 1.09002 * 109.46737 * 300.00101 * 11 9 6 34 34 H 1.08997 * 109.47366 * 186.20007 * 13 12 2 35 35 H 1.09001 * 109.47344 * 306.20451 * 13 12 2 36 36 H 0.96997 * 119.99391 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0410 -0.7224 1.2487 5 7 1.5818 -2.1187 1.2266 6 6 2.0720 -2.8119 0.0271 7 1 3.1620 -2.8116 0.0269 8 6 1.5620 -4.2543 0.0269 9 6 1.5610 -2.0893 -1.2216 10 1 0.4713 -2.1134 -1.2353 11 6 2.1026 -2.7855 -2.4717 12 7 2.0202 -0.6936 -1.1992 13 6 1.6129 0.0142 -2.4203 14 6 2.3017 1.3534 -2.4780 15 1 2.9743 1.6493 -1.6865 16 6 2.0723 2.2014 -3.5407 17 7 1.2528 1.8413 -4.5043 18 14 2.9254 3.8617 -3.6120 19 1 3.7901 4.0255 -2.4159 20 1 3.7588 3.9378 -4.8387 21 1 1.9061 4.9413 -3.6381 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3634 0.5145 0.8896 24 1 -0.3633 0.5131 -0.8904 25 1 3.1307 -0.6984 1.2624 26 1 1.6551 -0.2265 2.1393 27 1 0.5759 -2.1693 1.2878 28 1 1.9254 -4.7681 -0.8631 29 1 1.9254 -4.7684 0.9167 30 1 0.4720 -4.2543 0.0270 31 1 1.7631 -3.8212 -2.4868 32 1 1.7381 -2.2710 -3.3608 33 1 3.1922 -2.7606 -2.4581 34 1 1.8926 -0.5761 -3.2929 35 1 0.5329 0.1612 -2.4120 36 1 1.0912 2.4380 -5.2517 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000401405163.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:31 Heat of formation + Delta-G solvation = -18.849581 kcal Electronic energy + Delta-G solvation = -15332.809953 eV Core-core repulsion = 13043.679649 eV Total energy + Delta-G solvation = -2289.130305 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.98781 -36.18626 -34.83731 -34.31335 -30.13023 -29.66555 -28.16603 -26.65501 -25.18784 -22.66595 -22.13046 -20.00737 -18.39237 -16.99594 -16.73326 -16.38521 -15.99035 -15.69311 -15.03608 -14.68922 -14.28774 -13.91257 -13.52245 -13.44444 -13.02614 -12.87619 -12.84337 -12.53311 -12.50608 -12.36960 -12.31210 -11.97561 -11.75029 -11.68532 -11.44804 -11.14327 -10.59039 -9.34430 -8.84890 -8.21429 -6.30154 1.37203 1.38153 1.51367 2.37938 3.10350 3.18939 3.37386 3.91221 4.11297 4.13406 4.23196 4.30568 4.50524 4.53480 4.55484 4.65949 4.76595 4.84692 4.91994 4.98409 5.04330 5.11383 5.14677 5.21823 5.31341 5.36400 5.43662 5.49196 5.65821 6.04269 6.10270 6.38555 6.52787 6.70893 6.86764 7.38883 8.89452 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.042174 B = 0.009295 C = 0.008406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.750280 B = 3011.617590 C = 3330.160567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.047 3.953 3 H 0.065 0.935 4 C 0.074 3.926 5 N -0.674 5.674 6 C 0.096 3.904 7 H 0.075 0.925 8 C -0.137 4.137 9 C 0.045 3.955 10 H 0.022 0.978 11 C -0.138 4.138 12 N -0.532 5.532 13 C 0.203 3.797 14 C -0.518 4.518 15 H 0.057 0.943 16 C 0.001 3.999 17 N -0.934 5.934 18 Si 0.966 3.034 19 H -0.264 1.264 20 H -0.279 1.279 21 H -0.279 1.279 22 H 0.056 0.944 23 H 0.076 0.924 24 H 0.028 0.972 25 H 0.069 0.931 26 H 0.096 0.904 27 H 0.340 0.660 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.055 0.945 31 H 0.085 0.915 32 H 0.031 0.969 33 H 0.055 0.945 34 H 0.011 0.989 35 H -0.035 1.035 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.387 -8.467 9.875 13.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.064 4.064 3 H 0.084 0.916 4 C -0.056 4.056 5 N -0.302 5.302 6 C -0.014 4.014 7 H 0.093 0.907 8 C -0.194 4.194 9 C -0.065 4.065 10 H 0.040 0.960 11 C -0.196 4.196 12 N -0.257 5.257 13 C 0.077 3.923 14 C -0.556 4.556 15 H 0.076 0.924 16 C -0.197 4.197 17 N -0.575 5.575 18 Si 0.791 3.209 19 H -0.189 1.189 20 H -0.204 1.204 21 H -0.205 1.205 22 H 0.075 0.925 23 H 0.095 0.905 24 H 0.048 0.952 25 H 0.088 0.912 26 H 0.114 0.886 27 H 0.158 0.842 28 H 0.091 0.909 29 H 0.092 0.908 30 H 0.074 0.926 31 H 0.103 0.897 32 H 0.050 0.950 33 H 0.074 0.926 34 H 0.029 0.971 35 H -0.017 1.017 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.585 -8.659 10.164 13.365 hybrid contribution -1.286 1.635 -1.554 2.596 sum -0.700 -7.024 8.610 11.133 Atomic orbital electron populations 1.22265 0.97924 1.01227 1.01639 1.22329 0.92955 0.99060 0.92040 0.91646 1.22047 1.00590 0.87748 0.95200 1.60984 1.16681 1.13880 1.38698 1.21619 0.99910 0.94017 0.85891 0.90714 1.21802 1.01105 0.93494 1.03047 1.22430 0.96282 0.89807 0.97985 0.95988 1.21852 1.01335 1.00241 0.96181 1.62381 1.59191 1.01355 1.02730 1.19466 0.92148 0.92874 0.87809 1.21485 1.26022 1.01585 1.06508 0.92439 1.25873 0.96111 1.02492 0.95203 1.70095 1.37761 1.38412 1.11269 0.85386 0.78344 0.78945 0.78265 1.18858 1.20448 1.20462 0.92548 0.90492 0.95242 0.91246 0.88583 0.84192 0.90926 0.90791 0.92569 0.89680 0.95002 0.92584 0.97064 1.01713 0.92841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.09 8.23 71.98 0.59 -5.50 16 2 C 0.05 1.77 2.79 44.92 0.13 1.90 16 3 H 0.07 2.83 6.79 -2.39 -0.02 2.82 16 4 C 0.07 2.21 6.21 86.30 0.54 2.75 16 5 N -0.67 -18.23 6.49 -491.03 -3.19 -21.42 16 6 C 0.10 2.74 2.71 44.92 0.12 2.86 16 7 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 8 C -0.14 -2.94 9.13 71.98 0.66 -2.28 16 9 C 0.05 1.61 1.68 44.92 0.08 1.68 16 10 H 0.02 0.83 6.35 -2.39 -0.02 0.81 16 11 C -0.14 -4.77 8.58 71.98 0.62 -4.15 16 12 N -0.53 -23.07 4.47 -849.96 -3.80 -26.87 16 13 C 0.20 10.92 4.30 85.56 0.37 11.29 16 14 C -0.52 -29.81 8.47 25.60 0.22 -29.59 16 15 H 0.06 3.29 7.13 -2.91 -0.02 3.26 16 16 C 0.00 0.05 5.46 84.65 0.46 0.51 16 17 N -0.93 -56.98 13.29 21.45 0.28 -56.70 16 18 Si 0.97 45.08 29.54 68.60 2.03 47.10 16 19 H -0.26 -11.90 7.11 99.48 0.71 -11.19 16 20 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 21 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 22 H 0.06 1.82 5.10 -2.39 -0.01 1.81 16 23 H 0.08 2.27 8.14 -2.38 -0.02 2.25 16 24 H 0.03 1.26 6.35 -2.39 -0.02 1.24 16 25 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 26 H 0.10 2.39 8.14 -2.39 -0.02 2.37 16 27 H 0.34 8.53 7.19 -89.69 -0.64 7.89 16 28 H 0.07 1.43 6.47 -2.39 -0.02 1.42 16 29 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.08 2.29 6.47 -2.38 -0.02 2.27 16 32 H 0.03 1.28 6.16 -2.39 -0.01 1.27 16 33 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.01 0.66 5.73 -2.39 -0.01 0.65 16 35 H -0.03 -2.03 6.10 -2.39 -0.01 -2.05 16 36 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 Total: -1.00 -63.84 267.80 -0.48 -64.32 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: 0.42 Total: 14.08 kcal Atomic # 6 Polarization: -24.30 SS G_CDS: 3.77 Total: -20.52 kcal Atomic # 7 Polarization: -98.28 SS G_CDS: -6.70 Total: -104.98 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.10 kcal Total: -63.84 -0.48 -64.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401405163.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.474 kcal (2) G-P(sol) polarization free energy of solvation -63.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds