Wall clock time and date at job start Mon Mar 30 2020 02:55:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.50378 * 2 1 4 4 C 1.53058 * 109.48990 * 239.94904 * 2 1 3 5 5 H 1.08992 * 109.49017 * 61.65627 * 4 2 1 6 6 C 1.52999 * 109.48493 * 301.59454 * 4 2 1 7 7 N 1.46953 * 109.36391 * 181.63171 * 4 2 1 8 8 C 1.46953 * 110.88582 * 59.31331 * 7 4 2 9 9 C 1.53048 * 109.36894 * 300.68487 * 8 7 4 10 10 H 1.09008 * 109.48506 * 298.43427 * 9 8 7 11 11 C 1.52992 * 109.49194 * 178.36562 * 9 8 7 12 12 N 1.46955 * 109.49004 * 120.05212 * 2 1 3 13 13 C 1.46898 * 111.00208 * 303.15468 * 12 2 1 14 14 C 1.50692 * 109.47417 * 295.98596 * 13 12 2 15 15 H 1.08000 * 119.99937 * 5.26572 * 14 13 12 16 16 C 1.37874 * 120.00147 * 185.26219 * 14 13 12 17 17 N 1.31516 * 119.99816 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00217 * 180.02562 * 16 14 13 19 19 H 1.48493 * 109.47236 * 89.99841 * 18 16 14 20 20 H 1.48501 * 109.47022 * 210.00358 * 18 16 14 21 21 H 1.48504 * 109.46834 * 329.99815 * 18 16 14 22 22 H 1.08999 * 109.47118 * 299.94188 * 1 2 3 23 23 H 1.08996 * 109.47567 * 59.94722 * 1 2 3 24 24 H 1.09008 * 109.46613 * 179.97438 * 1 2 3 25 25 H 1.09006 * 109.47346 * 60.00080 * 6 4 2 26 26 H 1.09001 * 109.47330 * 180.02562 * 6 4 2 27 27 H 1.09008 * 109.47339 * 299.99881 * 6 4 2 28 28 H 1.00897 * 110.99819 * 183.18941 * 7 4 2 29 29 H 1.08992 * 109.49259 * 180.71070 * 8 7 4 30 30 H 1.09007 * 109.48499 * 60.64907 * 8 7 4 31 31 H 1.08995 * 109.47541 * 293.23949 * 11 9 8 32 32 H 1.08998 * 109.47485 * 53.24670 * 11 9 8 33 33 H 1.09002 * 109.47233 * 173.24528 * 11 9 8 34 34 H 1.09000 * 109.46810 * 55.98827 * 13 12 2 35 35 H 1.08998 * 109.46901 * 175.97999 * 13 12 2 36 36 H 0.97003 * 119.99618 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0407 -0.7225 -1.2489 5 1 1.7021 -0.1930 -2.1394 6 6 1.4986 -2.1532 -1.2684 7 7 3.5097 -0.7552 -1.2265 8 6 4.0000 -1.4489 -0.0274 9 6 3.4894 -0.7264 1.2214 10 1 3.8756 0.2929 1.2353 11 6 3.9645 -1.4698 2.4714 12 7 2.0203 -0.6938 1.1991 13 6 1.4889 -0.0738 2.4203 14 6 2.0062 1.3370 2.5335 15 1 2.5940 1.7624 1.7336 16 6 1.7290 2.0847 3.6582 17 7 1.0128 1.5668 4.6321 18 14 2.3696 3.8338 3.7983 19 1 1.3703 4.7739 3.2304 20 1 2.6025 4.1627 5.2276 21 1 3.6455 3.9552 3.0482 22 1 -0.3633 0.5129 0.8905 23 1 -0.3634 0.5146 -0.8894 24 1 -0.3633 -1.0278 -0.0005 25 1 0.4089 -2.1287 -1.2830 26 1 1.8627 -2.6677 -2.1576 27 1 1.8382 -2.6826 -0.3781 28 1 3.8747 -1.1809 -2.0653 29 1 5.0900 -1.4489 -0.0275 30 1 3.6361 -2.4764 -0.0274 31 1 3.4820 -2.4460 2.5190 32 1 5.0457 -1.6006 2.4274 33 1 3.7043 -0.8923 3.3585 34 1 0.3999 -0.0591 2.3759 35 1 1.8094 -0.6492 3.2888 36 1 0.8181 2.0927 5.4236 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000401405181.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:36 Heat of formation + Delta-G solvation = -16.974915 kcal Electronic energy + Delta-G solvation = -15517.303720 eV Core-core repulsion = 13228.254707 eV Total energy + Delta-G solvation = -2289.049013 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.72159 -36.37975 -34.70080 -34.24060 -30.27139 -29.24166 -28.17268 -26.33442 -25.63291 -22.57983 -21.78652 -19.74832 -17.92967 -17.48449 -16.68030 -16.53913 -16.16791 -15.54273 -14.75573 -14.67564 -14.07203 -13.83241 -13.45003 -13.30637 -13.11831 -12.91190 -12.79447 -12.52976 -12.32360 -12.25278 -12.22849 -11.94799 -11.75820 -11.45566 -11.37849 -10.89443 -10.53570 -9.31441 -8.89387 -8.11433 -6.29749 1.33640 1.34598 1.44888 2.37446 3.11817 3.35059 3.39009 3.98106 4.15620 4.27947 4.39195 4.52096 4.53361 4.64316 4.72816 4.82311 4.83604 4.88620 4.95295 5.04336 5.18215 5.30144 5.35876 5.36433 5.43589 5.45458 5.48699 5.59553 5.83471 6.12776 6.14174 6.33622 6.67126 6.68251 6.93059 7.40441 8.89161 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.035319 B = 0.010697 C = 0.009965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.584055 B = 2616.975191 C = 2809.051691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.091 3.909 3 H 0.012 0.988 4 C 0.093 3.907 5 H 0.091 0.909 6 C -0.167 4.167 7 N -0.695 5.695 8 C 0.071 3.929 9 C 0.086 3.914 10 H 0.015 0.985 11 C -0.129 4.129 12 N -0.524 5.524 13 C 0.197 3.803 14 C -0.543 4.543 15 H 0.045 0.955 16 C 0.014 3.986 17 N -0.924 5.924 18 Si 0.948 3.052 19 H -0.275 1.275 20 H -0.280 1.280 21 H -0.273 1.273 22 H 0.034 0.966 23 H 0.070 0.930 24 H 0.067 0.933 25 H 0.063 0.937 26 H 0.064 0.936 27 H 0.053 0.947 28 H 0.352 0.648 29 H 0.085 0.915 30 H 0.046 0.954 31 H 0.058 0.942 32 H 0.072 0.928 33 H 0.032 0.968 34 H 0.010 0.990 35 H 0.012 0.988 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.481 -6.381 -11.090 13.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.018 4.018 3 H 0.030 0.970 4 C -0.017 4.017 5 H 0.109 0.891 6 C -0.225 4.225 7 N -0.326 5.326 8 C -0.058 4.058 9 C -0.023 4.023 10 H 0.033 0.967 11 C -0.187 4.187 12 N -0.248 5.248 13 C 0.070 3.930 14 C -0.582 4.582 15 H 0.063 0.937 16 C -0.185 4.185 17 N -0.565 5.565 18 Si 0.774 3.226 19 H -0.201 1.201 20 H -0.205 1.205 21 H -0.198 1.198 22 H 0.053 0.947 23 H 0.089 0.911 24 H 0.085 0.915 25 H 0.082 0.918 26 H 0.083 0.917 27 H 0.072 0.928 28 H 0.172 0.828 29 H 0.104 0.896 30 H 0.064 0.936 31 H 0.077 0.923 32 H 0.091 0.909 33 H 0.051 0.949 34 H 0.028 0.972 35 H 0.030 0.970 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.315 -6.211 -10.673 12.786 hybrid contribution 0.169 1.183 0.563 1.321 sum 3.484 -5.028 -10.110 11.816 Atomic orbital electron populations 1.21800 0.94355 1.02007 1.01124 1.21465 0.95247 0.94713 0.90422 0.97018 1.21608 0.87323 0.96047 0.96716 0.89139 1.22320 1.01963 0.96709 1.01546 1.60573 1.08322 1.58438 1.05294 1.21989 0.99379 0.95568 0.88882 1.21469 0.88534 0.97057 0.95224 0.96711 1.21649 1.00697 0.99728 0.96650 1.62689 1.07501 1.52069 1.02557 1.19485 0.94248 0.91307 0.87949 1.21888 1.33023 1.00610 1.02704 0.93708 1.25692 0.95385 1.01869 0.95528 1.70053 1.39857 1.38438 1.08119 0.85710 0.78788 0.80819 0.77316 1.20053 1.20531 1.19806 0.94671 0.91110 0.91455 0.91822 0.91749 0.92790 0.82818 0.89623 0.93572 0.92317 0.90867 0.94879 0.97176 0.96976 0.92789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.91 8.48 71.98 0.61 -4.30 16 2 C 0.09 3.56 1.94 44.92 0.09 3.65 16 3 H 0.01 0.55 6.72 -2.38 -0.02 0.53 16 4 C 0.09 2.78 3.24 44.92 0.15 2.92 16 5 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 6 C -0.17 -4.31 8.44 71.98 0.61 -3.70 16 7 N -0.69 -20.02 6.70 -491.15 -3.29 -23.31 16 8 C 0.07 2.16 5.62 86.31 0.49 2.64 16 9 C 0.09 3.44 2.19 44.92 0.10 3.54 16 10 H 0.01 0.70 6.67 -2.38 -0.02 0.69 16 11 C -0.13 -4.85 8.63 71.98 0.62 -4.22 16 12 N -0.52 -22.51 3.87 -849.92 -3.29 -25.79 16 13 C 0.20 10.39 4.31 85.55 0.37 10.76 16 14 C -0.54 -30.80 7.65 25.60 0.20 -30.60 16 15 H 0.04 2.61 5.82 -2.91 -0.02 2.59 16 16 C 0.01 0.82 5.46 84.65 0.46 1.28 16 17 N -0.92 -55.59 13.29 21.45 0.28 -55.31 16 18 Si 0.95 45.32 29.54 68.60 2.03 47.35 16 19 H -0.27 -12.80 7.11 99.48 0.71 -12.09 16 20 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 21 H -0.27 -12.89 7.11 99.48 0.71 -12.18 16 22 H 0.03 1.51 6.27 -2.39 -0.01 1.50 16 23 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 24 H 0.07 2.24 6.40 -2.38 -0.02 2.23 16 25 H 0.06 1.60 6.40 -2.38 -0.02 1.58 16 26 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.05 1.60 5.94 -2.38 -0.01 1.59 16 28 H 0.35 7.79 8.89 -89.70 -0.80 6.99 16 29 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 30 H 0.05 1.32 6.34 -2.38 -0.02 1.31 16 31 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 33 H 0.03 1.47 6.77 -2.39 -0.02 1.45 16 34 H 0.01 0.58 6.03 -2.39 -0.01 0.56 16 35 H 0.01 0.70 6.42 -2.39 -0.02 0.68 16 36 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 Total: -1.00 -63.11 266.50 -0.32 -63.42 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: 0.27 Total: 11.67 kcal Atomic # 6 Polarization: -21.72 SS G_CDS: 3.68 Total: -18.03 kcal Atomic # 7 Polarization: -98.12 SS G_CDS: -6.29 Total: -104.41 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.35 kcal Total: -63.11 -0.32 -63.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401405181.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.449 kcal (2) G-P(sol) polarization free energy of solvation -63.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds